Rmu_sc0001176.1_g000026

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001176.1
OG0000169
Physical Location & Seq
Reverse (-)
132339 .. 132710
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001176.1_g000026.1.cds

Sequence Viewer

Length: 372 bp
atggcttctattgacgcagtgactgctagctttgccgcctctctggcacttgctgatggtggaaacgccccagatctgggaaggattaggggagggcatgtttgcaggtcttctcaatcctttcttctcggtaagccgctcacccgtaaaccagttgatccctctgatttcaaatctcacttcctccggatgtggatggtggacaagggatttagggttcaagaacgagcggataaccgtttcctcttttcttttggatctgtgcgggatcgaaacaaggtactgaaggatagtgtgtggtgttatgatcgggttccggtctgtttagaggaatatgttggtgttctggccatcgaggacgtccctatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283

Protein Analysis

123

Amino Acids

13.71

Weight (kDa)

8.53

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 363
Acc36I ACCTGC 1 cut(s) 96
AccBSI CCGCTC 2 cut(s) 139, 230
AccIII TCCGGA 1 cut(s) 186
AciI CCGC 4 cut(s) 36, 137, 230, 265
AclWI GGATC 3 cut(s) 152, 265, 276
AcoI YGGCCR 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 2 cut(s) 76, 77
AgsI TTSAA 2 cut(s) 172, 221
AloI GAACNNNNNNTCC 2 cut(s) 201, 233
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
AlwI GGATC 3 cut(s) 152, 265, 276
AlwNI CAGNNNCTG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 186
AoxI GGCC 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 133
AsuNHI GCTAGC 1 cut(s) 26
BalI TGGCCA 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 102
BccI CCATC 3 cut(s) 50, 190, 359
BfaI CTAG 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 96
BglI GCCNNNNNGGC 1 cut(s) 44
BglII AGATCT 1 cut(s) 73
BisI GCNGC 2 cut(s) 36, 137
BlsI GCNGC 2 cut(s) 37, 138
BmiI GGNNCC 1 cut(s) 315
BmtI GCTAGC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 360
BsaWI WCCGGW 2 cut(s) 186, 316
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 77
Bse1I ACTGG 1 cut(s) 152
BseAI TCCGGA 1 cut(s) 186
BseGI GGATG 2 cut(s) 195, 201
BseLI CCNNNNNNNGG 2 cut(s) 76, 77
BseNI ACTGG 1 cut(s) 152
BshFI GGCC 1 cut(s) 350
BsiSI CCGG 2 cut(s) 187, 317
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 76, 77
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 1 cut(s) 350
Bsp13I TCCGGA 1 cut(s) 186
Bsp143I GATC 5 cut(s) 73, 157, 257, 268, 307
BspACI CCGC 4 cut(s) 36, 137, 230, 265
BspANI GGCC 1 cut(s) 350
BspEI TCCGGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 315
BspMI ACCTGC 1 cut(s) 96
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 3 cut(s) 152, 265, 276
BsrBI CCGCTC 2 cut(s) 139, 230
BsrI ACTGG 1 cut(s) 152
BssMI GATC 5 cut(s) 73, 157, 257, 268, 307
BssNI GRCGYC 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 360
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 28
BstF5I GGATG 2 cut(s) 195, 201
BstKTI GATC 5 cut(s) 76, 160, 260, 271, 310
BstMBI GATC 5 cut(s) 73, 157, 257, 268, 307
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 44
BstNSI RCATGY 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 2 cut(s) 73, 257
BstYI RGATCY 2 cut(s) 73, 257
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 2 cut(s) 195, 201
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 28
CaiI CAGNNNCTG 1 cut(s) 23
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 281
CviAII CATG 1 cut(s) 98
CviJI RGCY 4 cut(s) 5, 30, 136, 350
CviKI_1 RGCY 4 cut(s) 5, 30, 136, 350
CviQI GTAC 1 cut(s) 281
DpnI GATC 5 cut(s) 75, 159, 259, 270, 309
DpnII GATC 5 cut(s) 73, 157, 257, 268, 307
EaeI YGGCCR 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 305
FaeI CATG 1 cut(s) 101
FaiI YATR 4 cut(s) 99, 306, 336, 368
FaqI GGGAC 1 cut(s) 347
FatI CATG 1 cut(s) 97
FauI CCCGC 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 36, 137
FokI GGATG 2 cut(s) 202, 208
Fsp4HI GCNGC 2 cut(s) 36, 137
FspBI CTAG 1 cut(s) 27
GluI GCNGC 2 cut(s) 36, 137
HaeIII GGCC 1 cut(s) 350
HapII CCGG 2 cut(s) 187, 317
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 1 cut(s) 101
HpaII CCGG 2 cut(s) 187, 317
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 149, 202
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 187, 221
Hpy8I GTNNAC 2 cut(s) 149, 202
HpyAV CCTTC 2 cut(s) 75, 280
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 44
HpySE526I ACGT 1 cut(s) 360
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 1 cut(s) 101
Kpn2I TCCGGA 1 cut(s) 186
Kzo9I GATC 5 cut(s) 73, 157, 257, 268, 307
LpnPI CCDG 8 cut(s) 29, 62, 84, 91, 165, 200, 330, 332
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 19
MalI GATC 5 cut(s) 75, 159, 259, 270, 309
MbiI CCGCTC 2 cut(s) 139, 230
MboI GATC 5 cut(s) 73, 157, 257, 268, 307
MboII GAAGA 2 cut(s) 102, 116
MflI RGATCY 2 cut(s) 73, 257
MlsI TGGCCA 1 cut(s) 350
MluNI TGGCCA 1 cut(s) 350
MnlI CCTC 7 cut(s) 49, 86, 172, 194, 254, 322, 349
Mox20I TGGCCA 1 cut(s) 350
MroI TCCGGA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 350
Msp20I TGGCCA 1 cut(s) 350
MspI CCGG 2 cut(s) 187, 317
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 44
NdeII GATC 5 cut(s) 73, 157, 257, 268, 307
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 315
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 101
PkrI GCNGC 2 cut(s) 37, 138
PspN4I GGNNCC 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 2 cut(s) 73, 257
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SatI GCNGC 2 cut(s) 36, 137
Sau3AI GATC 5 cut(s) 73, 157, 257, 268, 307
SetI ASST 4 cut(s) 32, 110, 282, 363
SsiI CCGC 4 cut(s) 36, 137, 230, 265
SspMI CTAG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 1 cut(s) 363
TaqI TCGA 2 cut(s) 271, 354
TauI GCSGC 2 cut(s) 38, 139
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspRI CASTG 1 cut(s) 24
XceI RCATGY 1 cut(s) 101
XspI CTAG 1 cut(s) 27
ZraI GACGTC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.