Rorug04G0168300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000169
Physical Location & Seq
Forward (+)
29542827 .. 29545047
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0168300.1

Sequence Viewer

Length: 540 bp
ATGTCCTTGAGTGGTCCGCCAATGTCAAATTTTGCTTGTTTATCAACTAAAAAGCTTCACATTATCGATGTGATTTGCTTCAAGGAAGGTGCATGCTTTTGTGTTTGTGCTTCAGTGATGGCTTCGATGGTTATTGCTTGTCTGGATGTGAGGACGAATGACAAAGGAGATCTTGTTGTAACCAAAGGAGACCAATATGATGTAAGAGAGCATACAAAAGAGAATGAGGTGAGAGAACTTGGAAAGCCTGTGGAGCTTGCTGGACAGTATTACACAGATGGAGCTGATGAGGTCAGCTTTCTGAATATTACCGGTTTCCAGGACTTCCCTTTGGGTGACTTGCCTATGCTACAGGTATTGAGATATGCATCAGAAAATGTTTTCGTGCCATTAACAGTTGGAGGTGGCATTAGAGATTTTACCGATGCAACTGGCAGGCACTATTCTAGTTTGGAATTGTTGCTTCAGAATATTTTAGATGTGTGGCTGATAAGATCTCCATTGGAAGTGATGCAGTTTATGCTGCAGAAGAATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.9

Weight (kDa)

4.79

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_biosynth PF00977 43 - 143 1.2e-12 Histidine biosynthesis protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 17
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 2 cut(s) 96, 449
AgeI ACCGGT 1 cut(s) 311
AgsI TTSAA 1 cut(s) 82
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 4 cut(s) 55, 256, 284, 297
AluI AGCT 4 cut(s) 55, 256, 284, 297
Alw26I GTCTC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 523
ApoI RAATTY 1 cut(s) 28
AsiGI ACCGGT 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 241, 347
AvaII GGWCC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 510
BccI CCATC 3 cut(s) 112, 121, 272
BciT130I CCWGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 447
BfmI CTRYAG 2 cut(s) 350, 524
BglII AGATCT 2 cut(s) 169, 494
BisI GCNGC 1 cut(s) 524
BlsI GCNGC 1 cut(s) 525
Bme1390I CCNGG 1 cut(s) 320
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 320
BmsI GCATC 3 cut(s) 377, 415, 501
BpuEI CTTGAG 1 cut(s) 28
Bsa29I ATCGAT 1 cut(s) 66
BsaBI GATNNNNATC 1 cut(s) 367
BsaI GGTCTC 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bse118I RCCGGY 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 436
Bse8I GATNNNNATC 1 cut(s) 367
BseBI CCWGG 1 cut(s) 320
BseCI ATCGAT 1 cut(s) 66
BseGI GGATG 1 cut(s) 151
BseJI GATNNNNATC 1 cut(s) 367
BseNI ACTGG 1 cut(s) 436
BseXI GCAGC 1 cut(s) 510
BshTI ACCGGT 1 cut(s) 311
BshVI ATCGAT 1 cut(s) 66
BsiSI CCGG 1 cut(s) 312
BsmAI GTCTC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 169, 494
BspACI CCGC 1 cut(s) 17
BspDI ATCGAT 1 cut(s) 66
BspMAI CTGCAG 1 cut(s) 528
BspTNI GGTCTC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 311
BsrI ACTGG 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 311
BssMI GATC 2 cut(s) 169, 494
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 267, 397
BstAPI GCANNNNNTGC 1 cut(s) 520
BstC8I GCNNGC 3 cut(s) 94, 258, 437
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 2 cut(s) 172, 497
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 2 cut(s) 169, 494
BstMWI GCNNNNNNNGC 2 cut(s) 253, 520
BstNI CCWGG 1 cut(s) 320
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 318
BstSFI CTRYAG 2 cut(s) 350, 524
BstV1I GCAGC 1 cut(s) 510
BstX2I RGATCY 2 cut(s) 169, 494
BstYI RGATCY 2 cut(s) 169, 494
Bsu15I ATCGAT 1 cut(s) 66
BsuTUI ATCGAT 1 cut(s) 66
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 3 cut(s) 94, 258, 437
Cfr10I RCCGGY 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 14
ClaI ATCGAT 1 cut(s) 66
CspAI ACCGGT 1 cut(s) 311
CviAII CATG 1 cut(s) 93
CviJI RGCY 7 cut(s) 55, 122, 247, 256, 284, 297, 487
CviKI_1 RGCY 7 cut(s) 55, 122, 247, 256, 284, 297, 487
DpnI GATC 2 cut(s) 171, 496
DpnII GATC 2 cut(s) 169, 494
EciI GGCGGA 1 cut(s) 6
Eco31I GGTCTC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 96, 449
EcoRII CCWGG 1 cut(s) 318
EcoT22I ATGCAT 1 cut(s) 370
FaeI CATG 1 cut(s) 96
FaiI YATR 6 cut(s) 94, 198, 213, 347, 366, 521
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FatI CATG 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 524
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 524
FspBI CTAG 1 cut(s) 447
GluI GCNGC 1 cut(s) 524
HapII CCGG 1 cut(s) 312
Hin1II CATG 1 cut(s) 96
HindIII AAGCTT 1 cut(s) 53
HpaII CCGG 1 cut(s) 312
HphI GGTGA 2 cut(s) 241, 347
Hpy188I TCNGA 3 cut(s) 303, 373, 468
Hpy188III TCNNGA 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 267, 397
HpyCH4V TGCA 5 cut(s) 92, 368, 428, 514, 526
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 520
Hsp92II CATG 1 cut(s) 96
Kzo9I GATC 2 cut(s) 169, 494
LmnI GCTCC 2 cut(s) 253, 281
LpnPI CCDG 9 cut(s) 128, 246, 261, 305, 325, 332, 338, 417, 421
Lsp1109I GCAGC 1 cut(s) 510
LweI GCATC 3 cut(s) 377, 415, 501
MaeI CTAG 1 cut(s) 447
MaeIII GTNAC 2 cut(s) 178, 335
MalI GATC 2 cut(s) 171, 496
MboI GATC 2 cut(s) 169, 494
MflI RGATCY 2 cut(s) 169, 494
MluCI AATT 2 cut(s) 28, 455
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 4 cut(s) 144, 220, 283, 395
Mph1103I ATGCAT 1 cut(s) 370
MseI TTAA 2 cut(s) 392, 538
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 320
MvaI CCWGG 1 cut(s) 320
MwoI GCNNNNNNNGC 2 cut(s) 253, 520
NdeII GATC 2 cut(s) 169, 494
NlaIII CATG 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 335
NsiI ATGCAT 1 cut(s) 370
NspI RCATGY 1 cut(s) 96
PaeI GCATGC 1 cut(s) 96
PfoI TCCNGGA 1 cut(s) 318
PinAI ACCGGT 1 cut(s) 311
PkrI GCNGC 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspPI GGNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 528
PsuI RGATCY 2 cut(s) 169, 494
SaqAI TTAA 2 cut(s) 392, 538
SatI GCNGC 1 cut(s) 524
Sau3AI GATC 2 cut(s) 169, 494
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 320
SetI ASST 9 cut(s) 57, 91, 231, 258, 286, 294, 299, 357, 406
SfaNI GCATC 3 cut(s) 377, 415, 501
SfcI CTRYAG 2 cut(s) 350, 524
SinI GGWCC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
SphI GCATGC 1 cut(s) 96
Sse9I AATT 2 cut(s) 28, 455
SsiI CCGC 1 cut(s) 17
SspI AATATT 3 cut(s) 307, 472, 535
SspMI CTAG 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 267, 397
TaqI TCGA 2 cut(s) 66, 125
TasI AATT 2 cut(s) 28, 455
Tru1I TTAA 2 cut(s) 392, 538
Tru9I TTAA 2 cut(s) 392, 538
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 1 cut(s) 523
Tsp45I GTSAC 1 cut(s) 335
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 1 cut(s) 28
XceI RCATGY 1 cut(s) 96
XspI CTAG 1 cut(s) 447
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.