Rmu_sc0006388.1_g000004

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006388.1
OG0000169
Physical Location & Seq
Reverse (-)
19394 .. 20209
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006388.1_g000004.1.cds

Sequence Viewer

Length: 747 bp
atggcctccattgacgctgtgacagccagctttgcagtcgctcttgctcttgctgatgggggcaaagcccaggacctgggaaagatgggaggaggccctattcgcaagtcctctcaatcctttttgcttggtaagcctctgacccgcaaggaggtggatcccaagactttcaaggctcacttccaccgtacctggatggtggacagggagtttaaggttcaggaaaaacctagagatatcttcctgttctcttttgaattggcatgtgatcgaaataaggttctctggggtggggtttggtgctttgaccaggccccggttagggtttcagggatccctcccttgtatgaagaacctgagaattttaccctaatcgaaaatctcttgggtggatttttggactatgataagaaggaattcaagaagggtttaatccagatcttggttaatcatgacatctctaaacaggtgtggcttgagcacaaattgttcatggatgtcgaggtagaaccgttgttgcagtttcagttcgagcatttgaaaggaaggcgctcgcaatgtggtctcgtaatgcatgctgggattccatgtgaggagccgaacacaaccatattgacacctagggttctgagttttctgggaccatcgactccaggaagatccttctctttctctgctcagaataagcatgagtttttcacggccccctccactgtccctaagaagaaaaagccaactatcagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

248

Amino Acids

28.02

Weight (kDa)

9.11

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 76, 442
AciI CCGC 1 cut(s) 145
AclWI GGATC 5 cut(s) 152, 165, 328, 341, 654
AcsI RAATTY 2 cut(s) 361, 416
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 6 cut(s) 76, 151, 316, 321, 322, 442
AgsI TTSAA 4 cut(s) 172, 257, 421, 541
AjnI CCWGG 5 cut(s) 69, 75, 191, 309, 652
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 1 cut(s) 569
AlwI GGATC 5 cut(s) 152, 165, 328, 341, 654
AlwNI CAGNNNCTG 1 cut(s) 76
AoxI GGCC 4 cut(s) 3, 94, 312, 702
ApoI RAATTY 2 cut(s) 361, 416
Asp700I GAANNNNTTC 1 cut(s) 416
AspA2I CCTAGG 1 cut(s) 620
AspLEI GCGC 1 cut(s) 552
AspS9I GGNCC 5 cut(s) 73, 95, 313, 641, 703
AsuC2I CCSGG 1 cut(s) 317
AvaII GGWCC 2 cut(s) 73, 641
AvrII CCTAGG 1 cut(s) 620
BamHI GGATCC 2 cut(s) 157, 333
Bbv12I GWGCWC 1 cut(s) 483
BccI CCATC 4 cut(s) 50, 79, 190, 652
BceAI ACGGC 1 cut(s) 717
BciT130I CCWGG 5 cut(s) 71, 77, 193, 311, 654
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 2 cut(s) 231, 621
BfoI RGCGCY 1 cut(s) 553
BglII AGATCT 1 cut(s) 438
BlnI CCTAGG 1 cut(s) 620
Bme1390I CCNGG 6 cut(s) 71, 77, 193, 311, 317, 654
Bme18I GGWCC 2 cut(s) 73, 641
BmgT120I GGNCC 5 cut(s) 73, 95, 313, 641, 703
BmiI GGNNCC 6 cut(s) 159, 315, 335, 597, 642, 705
BmrFI CCNGG 6 cut(s) 71, 77, 193, 311, 317, 654
BpmI CTGGAG 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 497
BpuMI CCSGG 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 569
BsaJI CCNNGG 4 cut(s) 69, 76, 315, 620
Bsc4I CCNNNNNNNGG 6 cut(s) 76, 151, 316, 321, 322, 442
Bse3DI GCAATG 1 cut(s) 563
BseBI CCWGG 5 cut(s) 71, 77, 193, 311, 654
BseDI CCNNGG 4 cut(s) 69, 76, 315, 620
BseGI GGATG 2 cut(s) 201, 502
BseLI CCNNNNNNNGG 6 cut(s) 76, 151, 316, 321, 322, 442
BseMI GCAATG 1 cut(s) 563
BseMII CTCAG 3 cut(s) 348, 620, 692
BseRI GAGGAG 2 cut(s) 105, 608
BseYI CCCAGC 1 cut(s) 578
BshFI GGCC 4 cut(s) 5, 96, 314, 704
BsiHKAI GWGCWC 1 cut(s) 483
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 2 cut(s) 654, 701
BslI CCNNNNNNNGG 6 cut(s) 76, 151, 316, 321, 322, 442
BsmAI GTCTC 1 cut(s) 569
BsmFI GGGAC 2 cut(s) 654, 701
BsnI GGCC 4 cut(s) 5, 96, 314, 704
Bso31I GGTCTC 1 cut(s) 569
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 5 cut(s) 157, 268, 333, 438, 659
BspACI CCGC 1 cut(s) 145
BspANI GGCC 4 cut(s) 5, 96, 314, 704
BspCNI CTCAG 3 cut(s) 349, 621, 691
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 6 cut(s) 159, 315, 335, 597, 642, 705
BspPI GGATC 5 cut(s) 152, 165, 328, 341, 654
BspTNI GGTCTC 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 563
BssECI CCNNGG 4 cut(s) 69, 76, 315, 620
BssMI GATC 5 cut(s) 157, 268, 333, 438, 659
BssT1I CCWWGG 1 cut(s) 620
Bst2UI CCWGG 5 cut(s) 71, 77, 193, 311, 654
Bst4CI ACNGT 3 cut(s) 188, 513, 715
BstC8I GCNNGC 3 cut(s) 28, 554, 576
BstDEI CTNAG 4 cut(s) 357, 629, 678, 720
BstF5I GGATG 2 cut(s) 201, 502
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 5 cut(s) 160, 271, 336, 441, 662
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 5 cut(s) 157, 268, 333, 438, 659
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 102, 133
BstNI CCWGG 5 cut(s) 71, 77, 193, 311, 654
BstNSI RCATGY 2 cut(s) 267, 578
BstSCI CCNGG 6 cut(s) 69, 75, 191, 309, 315, 652
BstX2I RGATCY 4 cut(s) 157, 333, 438, 659
BstYI RGATCY 4 cut(s) 157, 333, 438, 659
BsuRI GGCC 4 cut(s) 5, 96, 314, 704
BtsCI GGATG 2 cut(s) 201, 502
BtsIMutI CAGTG 1 cut(s) 711
Cac8I GCNNGC 3 cut(s) 28, 554, 576
CaiI CAGNNNCTG 1 cut(s) 76
CciI TCATGA 1 cut(s) 451
CfoI GCGC 1 cut(s) 552
Cfr13I GGNCC 5 cut(s) 73, 95, 313, 641, 703
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 189
CviAII CATG 6 cut(s) 264, 452, 493, 575, 588, 689
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 4 cut(s) 357, 629, 678, 720
DpnI GATC 5 cut(s) 159, 270, 335, 440, 661
DpnII GATC 5 cut(s) 157, 268, 333, 438, 659
Eco130I CCWWGG 1 cut(s) 620
Eco31I GGTCTC 1 cut(s) 569
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 2 cut(s) 73, 641
EcoO109I RGGNCCY 3 cut(s) 73, 95, 313
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 5 cut(s) 69, 75, 191, 309, 652
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 620
EcoT22I ATGCAT 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 620
FaeI CATG 6 cut(s) 267, 455, 496, 578, 591, 692
FaiI YATR 9 cut(s) 265, 348, 405, 453, 494, 576, 589, 611, 690
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 2 cut(s) 654, 701
FatI CATG 6 cut(s) 263, 451, 492, 574, 587, 688
FauI CCCGC 1 cut(s) 152
FokI GGATG 2 cut(s) 208, 509
FspBI CTAG 2 cut(s) 231, 621
GlaI GCGC 1 cut(s) 551
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 1 cut(s) 636
HaeII RGCGCY 1 cut(s) 553
HaeIII GGCC 4 cut(s) 5, 96, 314, 704
HapII CCGG 1 cut(s) 317
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 552
Hin1II CATG 6 cut(s) 267, 455, 496, 578, 591, 692
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HinfI GANTC 2 cut(s) 583, 649
HpaII CCGG 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 4 cut(s) 141, 630, 681, 743
Hpy188III TCNNGA 4 cut(s) 221, 421, 436, 452
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 4 cut(s) 406, 418, 540, 673
HpyCH4III ACNGT 3 cut(s) 188, 513, 715
HpyCH4V TGCA 3 cut(s) 35, 520, 574
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 102, 133
HpyF3I CTNAG 4 cut(s) 357, 629, 678, 720
Hsp92II CATG 6 cut(s) 267, 455, 496, 578, 591, 692
HspAI GCGC 1 cut(s) 550
Kzo9I GATC 5 cut(s) 157, 268, 333, 438, 659
LmnI GCTCC 1 cut(s) 595
MaeI CTAG 2 cut(s) 231, 621
MaeIII GTNAC 1 cut(s) 19
MalI GATC 5 cut(s) 159, 270, 335, 440, 661
MboI GATC 5 cut(s) 157, 268, 333, 438, 659
MboII GAAGA 4 cut(s) 232, 362, 669, 736
MflI RGATCY 4 cut(s) 157, 333, 438, 659
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 4 cut(s) 257, 361, 416, 485
MlyI GAGTC 1 cut(s) 643
Mph1103I ATGCAT 1 cut(s) 576
MroXI GAANNNNTTC 1 cut(s) 416
MseI TTAA 3 cut(s) 213, 431, 447
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 6 cut(s) 71, 77, 193, 311, 317, 654
MvaI CCWGG 5 cut(s) 71, 77, 193, 311, 654
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 102, 133
NciI CCSGG 1 cut(s) 317
NdeII GATC 5 cut(s) 157, 268, 333, 438, 659
NlaIII CATG 6 cut(s) 267, 455, 496, 578, 591, 692
NlaIV GGNNCC 6 cut(s) 159, 315, 335, 597, 642, 705
NmuCI GTSAC 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 576
NspI RCATGY 2 cut(s) 267, 578
PaeI GCATGC 1 cut(s) 578
PagI TCATGA 1 cut(s) 451
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 583
PflMI CCANNNNNTGG 2 cut(s) 76, 442
PfoI TCCNGGA 1 cut(s) 652
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
PpuMI RGGWCCY 1 cut(s) 73
Psp5II RGGWCCY 1 cut(s) 73
Psp6I CCWGG 5 cut(s) 69, 75, 191, 309, 652
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 5 cut(s) 69, 75, 191, 309, 652
PspN4I GGNNCC 6 cut(s) 159, 315, 335, 597, 642, 705
PspPI GGNCC 5 cut(s) 73, 95, 313, 641, 703
PspPPI RGGWCCY 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 76
PsuI RGATCY 4 cut(s) 157, 333, 438, 659
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SaqAI TTAA 3 cut(s) 213, 431, 447
Sau3AI GATC 5 cut(s) 157, 268, 333, 438, 659
Sau96I GGNCC 5 cut(s) 73, 95, 313, 641, 703
SchI GAGTC 1 cut(s) 643
ScrFI CCNGG 6 cut(s) 71, 77, 193, 311, 317, 654
SduI GDGCHC 1 cut(s) 483
SinI GGWCC 2 cut(s) 73, 641
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SphI GCATGC 1 cut(s) 578
Sse9I AATT 4 cut(s) 257, 361, 416, 485
SsiI CCGC 1 cut(s) 145
SspMI CTAG 2 cut(s) 231, 621
StyD4I CCNGG 6 cut(s) 69, 75, 191, 309, 315, 652
StyI CCWWGG 1 cut(s) 620
TaaI ACNGT 3 cut(s) 188, 513, 715
TaqI TCGA 5 cut(s) 271, 375, 501, 531, 647
TasI AATT 4 cut(s) 257, 361, 416, 485
TfiI GAWTC 1 cut(s) 583
Tru1I TTAA 3 cut(s) 213, 431, 447
Tru9I TTAA 3 cut(s) 213, 431, 447
TscAI CASTG 1 cut(s) 718
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 363, 481
TspRI CASTG 1 cut(s) 718
Van91I CCANNNNNTGG 2 cut(s) 76, 442
VpaK11BI GGWCC 2 cut(s) 73, 641
XapI RAATTY 2 cut(s) 361, 416
XceI RCATGY 2 cut(s) 267, 578
XmaJI CCTAGG 1 cut(s) 620
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 2 cut(s) 231, 621
Zsp2I ATGCAT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.