Rmu_sc0001433.1_g000012

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001433.1
OG0000169
Physical Location & Seq
Forward (+)
60229 .. 60889
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001433.1_g000012.1.cds

Sequence Viewer

Length: 552 bp
atggcttccattgatgaagtcacagcaagctttgctgcctcccttgctcttgctgaggtcggtagctcccctgatctggggaaaattggtggtggtcctgtgcgcaggatccaggagagggcgggggatctgttcctcttctctttcgaatctattcgagatcgtaacaaagtattacggggaggagtctggtgttatgatcgtgcccccgtgtgttttgcagagtatgatggagtcaaaccattgcatgaagtccaattcaagcatctccgagtttgggctagggtttctgggataccacctctttatgaagagtgtgagaatctcacactgattgggaacctccttaggggttttttggattatgataagaaggagtttaagaaaggattgaataggattttattctcccatgatgtgtccaagccaatcttgcttgaacgcaaagtctatttggatgttggtgtcgaaccgattcttcagtttcactttgaacatctacaagggagatgctcgcagtgtggacttgtcactcatgcaggaattgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

183

Amino Acids

20.5

Weight (kDa)

7.0

Isoelectric Point (pI)

32.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 104
AciI CCGC 1 cut(s) 122
AclWI GGATC 3 cut(s) 103, 116, 135
AcuI CTGAAG 1 cut(s) 464
AfiI CCNNNNNNNGG 5 cut(s) 76, 77, 118, 277, 349
AgsI TTSAA 4 cut(s) 262, 394, 440, 494
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 2 cut(s) 30, 66
AluI AGCT 2 cut(s) 30, 66
AlwI GGATC 3 cut(s) 103, 116, 135
ApeKI GCWGC 1 cut(s) 35
Asp700I GAANNNNTTC 2 cut(s) 153, 474
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 95
AsuII TTCGAA 1 cut(s) 147
AvaII GGWCC 1 cut(s) 95
AxyI CCTNAGG 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 208
BamHI GGATCC 1 cut(s) 108
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 113
BciVI GTATCC 1 cut(s) 288
BfaI CTAG 1 cut(s) 282
BfuI GTATCC 1 cut(s) 288
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 2 cut(s) 110, 341
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 274, 500
Bpu10I CCTNAGC 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 147
Bsc4I CCNNNNNNNGG 5 cut(s) 76, 77, 118, 277, 349
Bse21I CCTNAGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 5 cut(s) 76, 77, 118, 277, 349
BseMI GCAATG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 1 cut(s) 22
BslI CCNNNNNNNGG 5 cut(s) 76, 77, 118, 277, 349
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 5 cut(s) 73, 108, 127, 160, 199
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 110, 341
BspPI GGATC 3 cut(s) 103, 116, 135
BspT104I TTCGAA 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 242
BssMI GATC 5 cut(s) 73, 108, 127, 160, 199
Bst2UI CCWGG 1 cut(s) 113
Bst6I CTCTTC 2 cut(s) 143, 306
BstAPI GCANNNNNTGC 2 cut(s) 32, 545
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 28, 515
BstDEI CTNAG 2 cut(s) 54, 347
BstF5I GGATG 1 cut(s) 463
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 5 cut(s) 76, 111, 130, 163, 202
BstMBI GATC 5 cut(s) 73, 108, 127, 160, 199
BstMWI GCNNNNNNNGC 4 cut(s) 32, 44, 433, 545
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 2 cut(s) 108, 127
BstYI RGATCY 2 cut(s) 108, 127
Bsu36I CCTNAGG 1 cut(s) 347
BsuI GTATCC 1 cut(s) 288
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 2 cut(s) 329, 524
Cac8I GCNNGC 2 cut(s) 28, 515
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 95
CviAII CATG 3 cut(s) 248, 413, 536
CviJI RGCY 5 cut(s) 5, 30, 66, 281, 427
CviKI_1 RGCY 5 cut(s) 5, 30, 66, 281, 427
DdeI CTNAG 2 cut(s) 54, 347
DpnI GATC 5 cut(s) 75, 110, 129, 162, 201
DpnII GATC 5 cut(s) 73, 108, 127, 160, 199
Eam1104I CTCTTC 2 cut(s) 143, 306
EarI CTCTTC 2 cut(s) 143, 306
Eco47I GGWCC 1 cut(s) 95
Eco57I CTGAAG 1 cut(s) 464
Eco81I CCTNAGG 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 111
FaeI CATG 3 cut(s) 251, 416, 539
FaiI YATR 7 cut(s) 198, 228, 249, 309, 366, 414, 537
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FatI CATG 3 cut(s) 247, 412, 535
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 282
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 36
HhaI GCGC 1 cut(s) 105
Hin1II CATG 3 cut(s) 251, 416, 539
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 5 cut(s) 149, 186, 234, 322, 475
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 524
HpyAV CCTTC 1 cut(s) 367
HpyCH4V TGCA 3 cut(s) 221, 247, 539
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 44, 433, 545
HpyF3I CTNAG 2 cut(s) 54, 347
Hsp92II CATG 3 cut(s) 251, 416, 539
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 5 cut(s) 73, 108, 127, 160, 199
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 9 cut(s) 62, 84, 91, 98, 111, 125, 175, 276, 525
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 274, 500
MaeI CTAG 1 cut(s) 282
MaeIII GTNAC 3 cut(s) 19, 164, 529
MalI GATC 5 cut(s) 75, 110, 129, 162, 201
MboI GATC 5 cut(s) 73, 108, 127, 160, 199
MboII GAAGA 3 cut(s) 130, 323, 470
MflI RGATCY 2 cut(s) 108, 127
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 3 cut(s) 84, 257, 543
MlyI GAGTC 2 cut(s) 195, 243
MnlI CCTC 7 cut(s) 49, 49, 111, 146, 176, 312, 353
MroXI GAANNNNTTC 2 cut(s) 153, 474
MseI TTAA 1 cut(s) 381
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 4 cut(s) 32, 44, 433, 545
NdeII GATC 5 cut(s) 73, 108, 127, 160, 199
NlaIII CATG 3 cut(s) 251, 416, 539
NlaIV GGNNCC 2 cut(s) 110, 341
NmuCI GTSAC 2 cut(s) 19, 529
NsbI TGCGCA 1 cut(s) 104
NspV TTCGAA 1 cut(s) 147
PdmI GAANNNNTTC 2 cut(s) 153, 474
PfeI GAWTC 3 cut(s) 149, 322, 475
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 2 cut(s) 194, 242
PpsI GAGTC 2 cut(s) 194, 242
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 110, 341
PspPI GGNCC 1 cut(s) 95
PsuI RGATCY 2 cut(s) 108, 127
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 5 cut(s) 73, 108, 127, 160, 199
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 2 cut(s) 195, 243
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 208
SetI ASST 5 cut(s) 32, 60, 68, 304, 345
SfaNI GCATC 2 cut(s) 274, 500
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 1 cut(s) 95
Sse9I AATT 3 cut(s) 84, 257, 543
SsiI CCGC 1 cut(s) 122
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 111
TaqI TCGA 3 cut(s) 147, 157, 468
TasI AATT 3 cut(s) 84, 257, 543
TfiI GAWTC 3 cut(s) 149, 322, 475
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 2 cut(s) 336, 524
TseFI GTSAC 2 cut(s) 19, 529
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 2 cut(s) 19, 529
TspDTI ATGAA 3 cut(s) 30, 264, 324
TspRI CASTG 2 cut(s) 336, 524
VpaK11BI GGWCC 1 cut(s) 95
XmnI GAANNNNTTC 2 cut(s) 153, 474
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.