FvH4_4g13361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000169
Physical Location & Seq
Forward (+)
16975341 .. 16977033
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13361.t1

Sequence Viewer

Length: 519 bp
ATGAGTGGTTGTGAGGATGACGACCCTGGGAGCTTGGAGATCCTAAAGGGAGCAGAAATGGCAACGTGCCACTGTTATCATGTCGGATCTGTTCAGTACGTCTTCTTCGGTTTAGGAGGCTTGGCTTCAAATAATCTGGTGAAGGCCGACGCGTCTGGCCGACTGGAGGTAGAAGATAGTGGCGCGGCTGGTGGTGGTGTGAGGACTCAGGACGCCCAAGTAATCCAAGAGCCTGGATCCCCTCAGACCTTAACCAAGTTCCGCTATTGGTCGTTCGGCCTCCCTCACCCTCACCATTTTCTCAATCTCTTCAGTCTCAACTCTGTCTACTCTGAATTCCTTCACCCTGTTACTATGGCCTTCATTAACGCTATTACCGCAAATTTCGCGGCGTCATTGGCTCTAGAGTCGAGCGGCGCTTCTCTTGACGTTGGGGTCGGGGGTTGTCCTAGACGTCATTCTTCTCAATCATTTCTCCTCGGTCGACCTGCCATTCGTCGTCCAGTGGATCCGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.3

Weight (kDa)

5.73

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 434
AatII GACGTC 1 cut(s) 457
Acc36I ACCTGC 1 cut(s) 496
AccBSI CCGCTC 1 cut(s) 414
AccI GTMKAC 2 cut(s) 327, 484
AccII CGCG 3 cut(s) 152, 185, 389
AciI CCGC 5 cut(s) 185, 262, 378, 389, 414
AclWI GGATC 6 cut(s) 34, 94, 231, 244, 503, 516
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 2 cut(s) 335, 382
AcuI CTGAAG 1 cut(s) 295
AcyI GRCGYC 3 cut(s) 213, 392, 454
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 166
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 1 cut(s) 129
AjnI CCWGG 2 cut(s) 25, 232
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 6 cut(s) 34, 94, 231, 244, 503, 516
AoxI GGCC 4 cut(s) 144, 157, 277, 357
ApoI RAATTY 2 cut(s) 335, 382
ArsI GACNNNNNNTTYG 2 cut(s) 477, 509
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 2 cut(s) 185, 419
AsuHPI GGTGA 4 cut(s) 151, 278, 284, 335
BamHI GGATCC 2 cut(s) 236, 508
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BbsI GAAGAC 1 cut(s) 94
BciT130I CCWGG 2 cut(s) 27, 234
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 2 cut(s) 404, 450
BfoI RGCGCY 1 cut(s) 420
BfuAI ACCTGC 1 cut(s) 496
BisI GCNGC 3 cut(s) 186, 390, 415
BlsI GCNGC 3 cut(s) 187, 391, 416
Bme1390I CCNGG 2 cut(s) 27, 234
BmiI GGNNCC 2 cut(s) 238, 510
BmrFI CCNGG 2 cut(s) 27, 234
BpiI GAAGAC 1 cut(s) 94
BpmI CTGGAG 1 cut(s) 185
BsaHI GRCGYC 3 cut(s) 213, 392, 454
BsaJI CCNNGG 3 cut(s) 25, 26, 478
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse1I ACTGG 2 cut(s) 168, 503
BseBI CCWGG 2 cut(s) 27, 234
BseDI CCNNGG 3 cut(s) 25, 26, 478
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 2 cut(s) 221, 257
BseNI ACTGG 2 cut(s) 168, 503
BseRI GAGGAG 1 cut(s) 467
Bsh1236I CGCG 3 cut(s) 152, 185, 389
Bsh1285I CGRYCG 1 cut(s) 484
BshFI GGCC 4 cut(s) 146, 159, 279, 359
BsiEI CGRYCG 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 320
BsnI GGCC 4 cut(s) 146, 159, 279, 359
Bsp143I GATC 4 cut(s) 39, 86, 236, 508
BspACI CCGC 5 cut(s) 185, 262, 378, 389, 414
BspANI GGCC 4 cut(s) 146, 159, 279, 359
BspCNI CTCAG 2 cut(s) 220, 256
BspFNI CGCG 3 cut(s) 152, 185, 389
BspLI GGNNCC 2 cut(s) 238, 510
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 6 cut(s) 34, 94, 231, 244, 503, 516
BsrBI CCGCTC 1 cut(s) 414
BsrI ACTGG 2 cut(s) 168, 503
BssECI CCNNGG 3 cut(s) 25, 26, 478
BssMI GATC 4 cut(s) 39, 86, 236, 508
BssNI GRCGYC 3 cut(s) 213, 392, 454
Bst2UI CCWGG 2 cut(s) 27, 234
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 314
BstACI GRCGYC 3 cut(s) 213, 392, 454
BstDEI CTNAG 2 cut(s) 207, 243
BstF5I GGATG 1 cut(s) 22
BstFNI CGCG 3 cut(s) 152, 185, 389
BstH2I RGCGCY 1 cut(s) 420
BstHHI GCGC 2 cut(s) 185, 419
BstKTI GATC 4 cut(s) 42, 89, 239, 511
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 4 cut(s) 39, 86, 236, 508
BstMCI CGRYCG 1 cut(s) 484
BstMWI GCNNNNNNNGC 4 cut(s) 59, 377, 386, 398
BstNI CCWGG 2 cut(s) 27, 234
BstSCI CCNGG 2 cut(s) 25, 232
BstUI CGCG 3 cut(s) 152, 185, 389
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 4 cut(s) 39, 86, 236, 508
BstXI CCANNNNNNTGG 1 cut(s) 233
BstYI RGATCY 4 cut(s) 39, 86, 236, 508
BsuRI GGCC 4 cut(s) 146, 159, 279, 359
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 2 cut(s) 70, 510
BveI ACCTGC 1 cut(s) 496
CfoI GCGC 2 cut(s) 185, 419
CseI GACGC 4 cut(s) 141, 158, 221, 381
Csp6I GTAC 1 cut(s) 97
CviAII CATG 1 cut(s) 80
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 2 cut(s) 207, 243
DpnI GATC 4 cut(s) 41, 88, 238, 510
DpnII GATC 4 cut(s) 39, 86, 236, 508
DrdI GACNNNNNNGTC 1 cut(s) 434
DseDI GACNNNNNNGTC 1 cut(s) 434
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 25, 232
FaeI CATG 1 cut(s) 83
FaiI YATR 2 cut(s) 81, 356
FatI CATG 1 cut(s) 79
FblI GTMKAC 2 cut(s) 327, 484
Fnu4HI GCNGC 3 cut(s) 186, 390, 415
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 3 cut(s) 186, 390, 415
FspBI CTAG 2 cut(s) 404, 450
GlaI GCGC 2 cut(s) 184, 418
GluI GCNGC 3 cut(s) 186, 390, 415
GsuI CTGGAG 1 cut(s) 185
HaeII RGCGCY 1 cut(s) 420
HaeIII GGCC 4 cut(s) 146, 159, 279, 359
HgaI GACGC 4 cut(s) 141, 158, 221, 381
HhaI GCGC 2 cut(s) 185, 419
Hin1I GRCGYC 3 cut(s) 213, 392, 454
Hin1II CATG 1 cut(s) 83
Hin6I GCGC 2 cut(s) 183, 417
HinP1I GCGC 2 cut(s) 183, 417
HincII GTYRAC 1 cut(s) 485
HindII GTYRAC 1 cut(s) 485
HinfI GANTC 2 cut(s) 205, 407
HphI GGTGA 4 cut(s) 151, 278, 284, 335
Hpy166II GTNNAC 2 cut(s) 328, 485
Hpy188I TCNGA 4 cut(s) 86, 246, 334, 513
Hpy188III TCNNGA 3 cut(s) 209, 404, 425
Hpy8I GTNNAC 2 cut(s) 328, 485
Hpy99I CGWCG 2 cut(s) 152, 501
HpyAV CCTTC 3 cut(s) 136, 350, 370
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 4 cut(s) 65, 99, 429, 454
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 377, 386, 398
HpyF3I CTNAG 2 cut(s) 207, 243
HpySE526I ACGT 4 cut(s) 65, 99, 429, 454
Hsp92I GRCGYC 3 cut(s) 213, 392, 454
Hsp92II CATG 1 cut(s) 83
HspAI GCGC 2 cut(s) 183, 417
Kzo9I GATC 4 cut(s) 39, 86, 236, 508
LmnI GCTCC 2 cut(s) 30, 50
MaeI CTAG 2 cut(s) 404, 450
MaeII ACGT 4 cut(s) 65, 99, 429, 454
MaeIII GTNAC 1 cut(s) 349
MalI GATC 4 cut(s) 41, 88, 238, 510
MbiI CCGCTC 1 cut(s) 414
MboI GATC 4 cut(s) 39, 86, 236, 508
MboII GAAGA 5 cut(s) 94, 97, 185, 301, 453
MflI RGATCY 4 cut(s) 39, 86, 236, 508
MluCI AATT 3 cut(s) 335, 382, 514
MluI ACGCGT 1 cut(s) 150
MlyI GAGTC 2 cut(s) 199, 416
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 9 cut(s) 7, 110, 160, 195, 252, 290, 294, 300, 488
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 3 cut(s) 251, 366, 517
MspR9I CCNGG 2 cut(s) 27, 234
MvaI CCWGG 2 cut(s) 27, 234
MvnI CGCG 3 cut(s) 152, 185, 389
MwoI GCNNNNNNNGC 4 cut(s) 59, 377, 386, 398
NdeII GATC 4 cut(s) 39, 86, 236, 508
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 2 cut(s) 238, 510
PasI CCCWGGG 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 339
PkrI GCNGC 3 cut(s) 187, 391, 416
PleI GAGTC 2 cut(s) 199, 415
PpsI GAGTC 2 cut(s) 199, 415
Psp6I CCWGG 2 cut(s) 25, 232
PspGI CCWGG 2 cut(s) 25, 232
PspN4I GGNNCC 2 cut(s) 238, 510
PsuI RGATCY 4 cut(s) 39, 86, 236, 508
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SalI GTCGAC 1 cut(s) 483
SaqAI TTAA 3 cut(s) 251, 366, 517
SatI GCNGC 3 cut(s) 186, 390, 415
Sau3AI GATC 4 cut(s) 39, 86, 236, 508
SchI GAGTC 2 cut(s) 199, 416
ScrFI CCNGG 2 cut(s) 27, 234
SetI ASST 8 cut(s) 35, 68, 102, 171, 251, 432, 457, 490
Sse9I AATT 3 cut(s) 335, 382, 514
SsiI CCGC 5 cut(s) 185, 262, 378, 389, 414
SspMI CTAG 2 cut(s) 404, 450
StyD4I CCNGG 2 cut(s) 25, 232
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 4 cut(s) 68, 102, 432, 457
TaqI TCGA 2 cut(s) 410, 484
TaqII GACCGA 1 cut(s) 470
TasI AATT 3 cut(s) 335, 382, 514
TauI GCSGC 3 cut(s) 188, 392, 417
Tru1I TTAA 3 cut(s) 251, 366, 517
Tru9I TTAA 3 cut(s) 251, 366, 517
TscAI CASTG 2 cut(s) 77, 510
TspDTI ATGAA 1 cut(s) 352
TspRI CASTG 2 cut(s) 77, 510
XapI RAATTY 2 cut(s) 335, 382
XbaI TCTAGA 1 cut(s) 403
XmiI GTMKAC 2 cut(s) 327, 484
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 2 cut(s) 404, 450
ZraI GACGTC 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.