Rmu_sc0000918.1_g000031

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000918.1
OG0000169
Physical Location & Seq
Forward (+)
155321 .. 156073
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000918.1_g000031.1.cds

Sequence Viewer

Length: 753 bp
atggcttcaatcgacgccatcactgccaattttgtggtctctctggctcttgctgaagggggcaatgccccggatctggggaagattggaggaggtcatcttcgtcgatcttctcaatcttttcttatggggaaacctctcacccgtaaacctattgactctaatgatttcaaattgcatctctttcggacgtggatggtggagaaggacttcaggattcaagagaagactgacaaccggttcttgttttcctttgattcggtccgagatcggaacaaggtgcttaggggcggtgtgtggtgctttgacagagccccaatctatctggaggagtatgatggtgttcttcccatcactgaagtccctctgaagcatgttaggatgtgggttagggtttctgacagccctcctctctacgaggaacctgacaatttcatcctcattggaaacttgctgggtgattatctggactacaataagagagagtttcgaaaaggaatcgttcgaattttcttctctcatgacatctccaaaccggtaattcttgagcaaagggtttttctagccccaggcatagaacctattctgcagttccaatttgaacatctcaaagggagatgtcctcagtgtggattgattacacattctggggctaaatgtgaggagcccactgcggctgtctctgctcctagggttttgaagtttagtggtggcccctctacctctggcggcgccttttccttctctacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

250

Amino Acids

28.12

Weight (kDa)

8.64

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 731
AciI CCGC 3 cut(s) 291, 674, 729
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 507
AcuI CTGAAG 4 cut(s) 75, 196, 378, 389
AcyI GRCGYC 2 cut(s) 15, 732
AfiI CCNNNNNNNGG 3 cut(s) 76, 77, 629
AgeI ACCGGT 2 cut(s) 237, 535
AgsI TTSAA 5 cut(s) 9, 172, 221, 602, 700
AjiI CACGTC 1 cut(s) 192
AjnI CCWGG 1 cut(s) 568
Alw26I GTCTC 2 cut(s) 43, 685
AlwI GGATC 1 cut(s) 81
AoxI GGCC 1 cut(s) 712
ApoI RAATTY 1 cut(s) 507
AsiGI ACCGGT 2 cut(s) 237, 535
Asp700I GAANNNNTTC 2 cut(s) 209, 582
AspA2I CCTAGG 1 cut(s) 689
AspLEI GCGC 1 cut(s) 734
AspS9I GGNCC 2 cut(s) 262, 713
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 133, 470
AsuII TTCGAA 2 cut(s) 490, 505
AvaII GGWCC 1 cut(s) 262
AvrII CCTAGG 1 cut(s) 689
BanI GGYRCC 1 cut(s) 731
BanII GRGCYC 2 cut(s) 316, 669
BbsI GAAGAC 1 cut(s) 233
BccI CCATC 4 cut(s) 26, 190, 332, 359
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 1 cut(s) 570
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 2 cut(s) 43, 685
BfaI CTAG 2 cut(s) 563, 690
BfmI CTRYAG 1 cut(s) 587
BfoI RGCGCY 1 cut(s) 735
BisI GCNGC 2 cut(s) 675, 730
BlnI CCTAGG 1 cut(s) 689
BlsI GCNGC 2 cut(s) 676, 731
Bme1390I CCNGG 2 cut(s) 71, 570
Bme18I GGWCC 1 cut(s) 262
BmgBI CACGTC 1 cut(s) 192
BmgT120I GGNCC 2 cut(s) 262, 713
BmiI GGNNCC 4 cut(s) 423, 666, 715, 733
BmrFI CCNGG 2 cut(s) 71, 570
BmsI GCATC 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 233
BplI GAGNNNNNCTC 2 cut(s) 607, 639
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 284
Bpu14I TTCGAA 2 cut(s) 490, 505
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 71
BsaHI GRCGYC 2 cut(s) 15, 732
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 3 cut(s) 69, 568, 689
BsaWI WCCGGW 2 cut(s) 237, 535
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 77, 629
Bse118I RCCGGY 2 cut(s) 237, 535
Bse3DI GCAATG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 3 cut(s) 69, 568, 689
BseGI GGATG 3 cut(s) 201, 387, 435
BseLI CCNNNNNNNGG 3 cut(s) 76, 77, 629
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 638
BseRI GAGGAG 4 cut(s) 105, 344, 399, 677
BseYI CCCAGC 1 cut(s) 454
BshFI GGCC 1 cut(s) 714
BshNI GGYRCC 1 cut(s) 731
BshTI ACCGGT 2 cut(s) 237, 535
BsiSI CCGG 3 cut(s) 71, 238, 536
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 3 cut(s) 76, 77, 629
BsmAI GTCTC 2 cut(s) 43, 685
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 1 cut(s) 714
Bso31I GGTCTC 1 cut(s) 43
Bsp119I TTCGAA 2 cut(s) 490, 505
Bsp1286I GDGCHC 2 cut(s) 316, 669
Bsp143I GATC 3 cut(s) 73, 107, 268
BspACI CCGC 3 cut(s) 291, 674, 729
BspANI GGCC 1 cut(s) 714
BspCNI CTCAG 1 cut(s) 637
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 4 cut(s) 423, 666, 715, 733
BspMAI CTGCAG 1 cut(s) 591
BspPI GGATC 1 cut(s) 81
BspT104I TTCGAA 2 cut(s) 490, 505
BspT107I GGYRCC 1 cut(s) 731
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 70
BsrFI RCCGGY 2 cut(s) 237, 535
BssAI RCCGGY 2 cut(s) 237, 535
BssECI CCNNGG 3 cut(s) 69, 568, 689
BssMI GATC 3 cut(s) 73, 107, 268
BssNI GRCGYC 2 cut(s) 15, 732
BssT1I CCWWGG 1 cut(s) 689
Bst2UI CCWGG 1 cut(s) 570
BstACI GRCGYC 2 cut(s) 15, 732
BstBI TTCGAA 2 cut(s) 490, 505
BstDEI CTNAG 2 cut(s) 284, 624
BstF5I GGATG 3 cut(s) 201, 387, 435
BstH2I RGCGCY 1 cut(s) 735
BstHHI GCGC 1 cut(s) 734
BstKTI GATC 3 cut(s) 76, 110, 271
BstMAI GTCTC 2 cut(s) 43, 685
BstMBI GATC 3 cut(s) 73, 107, 268
BstMWI GCNNNNNNNGC 2 cut(s) 23, 683
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 2 cut(s) 69, 568
BstSFI CTRYAG 1 cut(s) 587
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 73
BstXI CCANNNNNNTGG 1 cut(s) 34
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 1 cut(s) 714
BtrI CACGTC 1 cut(s) 192
BtsCI GGATG 3 cut(s) 201, 387, 435
BtsI GCAGTG 2 cut(s) 21, 669
BtsIMutI CAGTG 4 cut(s) 21, 354, 632, 669
CciI TCATGA 1 cut(s) 520
CfoI GCGC 1 cut(s) 734
Cfr10I RCCGGY 2 cut(s) 237, 535
Cfr13I GGNCC 2 cut(s) 262, 713
CpoI CGGWCCG 1 cut(s) 262
CseI GACGC 1 cut(s) 23
CspAI ACCGGT 2 cut(s) 237, 535
CspI CGGWCCG 1 cut(s) 262
CviAII CATG 2 cut(s) 374, 521
CviJI RGCY 9 cut(s) 5, 47, 314, 405, 566, 653, 667, 677, 714
CviKI_1 RGCY 9 cut(s) 5, 47, 314, 405, 566, 653, 667, 677, 714
DdeI CTNAG 2 cut(s) 284, 624
DinI GGCGCC 1 cut(s) 733
DpnI GATC 3 cut(s) 75, 109, 270
DpnII GATC 3 cut(s) 73, 107, 268
Eco130I CCWWGG 1 cut(s) 689
Eco24I GRGCYC 2 cut(s) 316, 669
Eco31I GGTCTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 4 cut(s) 75, 196, 378, 389
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 689
EcoT38I GRGCYC 2 cut(s) 316, 669
EgeI GGCGCC 1 cut(s) 733
EheI GGCGCC 1 cut(s) 733
ErhI CCWWGG 1 cut(s) 689
FaeI CATG 2 cut(s) 377, 524
FaiI YATR 5 cut(s) 128, 336, 375, 522, 575
FaqI GGGAC 1 cut(s) 347
FatI CATG 2 cut(s) 373, 520
Fnu4HI GCNGC 2 cut(s) 675, 730
FokI GGATG 3 cut(s) 208, 394, 422
FriOI GRGCYC 2 cut(s) 316, 669
Fsp4HI GCNGC 2 cut(s) 675, 730
FspBI CTAG 2 cut(s) 563, 690
GlaI GCGC 1 cut(s) 733
GluI GCNGC 2 cut(s) 675, 730
GsaI CCCAGC 1 cut(s) 458
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 735
HaeIII GGCC 1 cut(s) 714
HapII CCGG 3 cut(s) 71, 238, 536
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 734
Hin1I GRCGYC 2 cut(s) 15, 732
Hin1II CATG 2 cut(s) 377, 524
Hin6I GCGC 1 cut(s) 732
HinP1I GCGC 1 cut(s) 732
HinfI GANTC 4 cut(s) 158, 217, 257, 498
HpaII CCGG 3 cut(s) 71, 238, 536
HphI GGTGA 2 cut(s) 133, 470
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 5 cut(s) 189, 266, 273, 369, 400
Hpy188III TCNNGA 6 cut(s) 214, 221, 326, 467, 521, 545
Hpy8I GTNNAC 1 cut(s) 149
Hpy99I CGWCG 2 cut(s) 17, 108
HpyAV CCTTC 3 cut(s) 50, 199, 751
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 178, 589
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 683
HpyF3I CTNAG 2 cut(s) 284, 624
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 2 cut(s) 15, 732
Hsp92II CATG 2 cut(s) 377, 524
HspAI GCGC 1 cut(s) 732
KasI GGCGCC 1 cut(s) 731
Kzo9I GATC 3 cut(s) 73, 107, 268
LmnI GCTCC 2 cut(s) 664, 691
LweI GCATC 1 cut(s) 187
MaeI CTAG 2 cut(s) 563, 690
MaeII ACGT 1 cut(s) 191
MalI GATC 3 cut(s) 75, 109, 270
MboI GATC 3 cut(s) 73, 107, 268
MboII GAAGA 6 cut(s) 92, 94, 102, 238, 338, 505
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 2 cut(s) 316, 669
MluCI AATT 6 cut(s) 28, 173, 430, 507, 540, 596
Mly113I GGCGCC 1 cut(s) 732
MlyI GAGTC 1 cut(s) 152
MroXI GAANNNNTTC 2 cut(s) 209, 582
MseI TTAA 1 cut(s) 751
MspI CCGG 3 cut(s) 71, 238, 536
MspR9I CCNGG 2 cut(s) 71, 570
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 2 cut(s) 23, 683
NarI GGCGCC 1 cut(s) 732
NciI CCSGG 1 cut(s) 71
NdeII GATC 3 cut(s) 73, 107, 268
NlaIII CATG 2 cut(s) 377, 524
NlaIV GGNNCC 4 cut(s) 423, 666, 715, 733
NspI RCATGY 1 cut(s) 377
NspV TTCGAA 2 cut(s) 490, 505
PagI TCATGA 1 cut(s) 520
PdmI GAANNNNTTC 2 cut(s) 209, 582
PfeI GAWTC 3 cut(s) 217, 257, 498
PinAI ACCGGT 2 cut(s) 237, 535
PkrI GCNGC 2 cut(s) 676, 731
PleI GAGTC 1 cut(s) 152
PluTI GGCGCC 1 cut(s) 735
PpsI GAGTC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 568
PspFI CCCAGC 1 cut(s) 454
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 4 cut(s) 423, 666, 715, 733
PspPI GGNCC 2 cut(s) 262, 713
PstI CTGCAG 1 cut(s) 591
PsuI RGATCY 1 cut(s) 73
Rsr2I CGGWCCG 1 cut(s) 262
RsrII CGGWCCG 1 cut(s) 262
SaqAI TTAA 1 cut(s) 751
SatI GCNGC 2 cut(s) 675, 730
Sau3AI GATC 3 cut(s) 73, 107, 268
Sau96I GGNCC 2 cut(s) 262, 713
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 71, 570
SduI GDGCHC 2 cut(s) 316, 669
SetI ASST 8 cut(s) 97, 139, 154, 194, 282, 427, 583, 725
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 587
SfoI GGCGCC 1 cut(s) 733
SfuI TTCGAA 2 cut(s) 490, 505
SinI GGWCC 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 6 cut(s) 28, 173, 430, 507, 540, 596
SsiI CCGC 3 cut(s) 291, 674, 729
SspDI GGCGCC 1 cut(s) 731
SspMI CTAG 2 cut(s) 563, 690
StyD4I CCNGG 2 cut(s) 69, 568
StyI CCWWGG 1 cut(s) 689
TaiI ACGT 1 cut(s) 194
TaqI TCGA 4 cut(s) 12, 106, 490, 505
TaqII GACCGA 1 cut(s) 250
TasI AATT 6 cut(s) 28, 173, 430, 507, 540, 596
TauI GCSGC 2 cut(s) 677, 732
TfiI GAWTC 3 cut(s) 217, 257, 498
Tru1I TTAA 1 cut(s) 751
Tru9I TTAA 1 cut(s) 751
TscAI CASTG 4 cut(s) 28, 361, 632, 676
TspDTI ATGAA 1 cut(s) 424
TspRI CASTG 4 cut(s) 28, 361, 632, 676
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 1 cut(s) 507
XceI RCATGY 1 cut(s) 377
XmaJI CCTAGG 1 cut(s) 689
XmnI GAANNNNTTC 2 cut(s) 209, 582
XspI CTAG 2 cut(s) 563, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.