Rmu_sc0022909.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022909.1
OG0000169
Physical Location & Seq
Reverse (-)
1523 .. 2842
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022909.1_g000001.1.cds

Sequence Viewer

Length: 993 bp
atggcttctattgacgctgtgactgctagttttgccgcctctctggcacttgctgaaggaggaaacgctccgatttggggaggattggaggagggcgtgttcgcaggtcttctcaatcttttcttctcgggcagcccctcacccgtaaaccagaacaaggtattgaagggtggtgtgtggtgttatgatcgggccccgatctgtctggaggaatatgatggtgttttgggcatcgaggacgtccctatgaaacatatcagaatctgggttagggtttctggcatccttcctctctatgaggaactagacaacctcatactcattgggaaccttttaggaggctacttggactatgacaagaaggtatttcgtaaagggtcgttgccctcaatgtggactacttacacactccgatctggtgagaagtgtgaggaacccaatgctgtggtttctactcctagggttttaaggtttggtggcgttccttctacctccagtggaggtttctctttctcggctcaaaataacaaggacctacctttgccttcatctactctgctgaagaagaagaagaagaagtcagtcattaggcgattagagagctcatcttctgatcttgctgttaaggaggataccatgactaacacggatcaaaccactggggtggaatcggggatttcttctgaacctggaccagaagacctacctattgctcccaagcaagctatagagaagcaaactttgatctacaagaagagagctcgtcaggaagcaagtgtaccttcgccgaagaagttcaagactattcttggagctgaggatgatgttactcttgtgaaactgaagaagaagatgggtcgaccacttggaagtaagaaaaaaggccctaggtcccaaaagaaggtggggataactcctttacgcctcacctatccatctgctacaactgttccagaagctggccctaaagaaaagggcaaaggaaaactctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

330

Amino Acids

35.68

Weight (kDa)

9.52

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 959
AccI GTMKAC 1 cut(s) 859
AciI CCGC 1 cut(s) 36
AclWI GGATC 1 cut(s) 657
AcuI CTGAAG 3 cut(s) 75, 581, 863
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 1 cut(s) 780
AfiI CCNNNNNNNGG 5 cut(s) 77, 157, 393, 901, 959
AgsI TTSAA 2 cut(s) 166, 799
AjnI CCWGG 1 cut(s) 688
AleI CACNNNNGTG 1 cut(s) 662
AloI GAACNNNNNNTCC 2 cut(s) 83, 115
AluBI AGCT 5 cut(s) 603, 725, 761, 815, 959
AluI AGCT 5 cut(s) 603, 725, 761, 815, 959
Alw21I GWGCWC 2 cut(s) 605, 763
AlwI GGATC 1 cut(s) 657
AlwNI CAGNNNCTG 2 cut(s) 264, 959
Ama87I CYCGRG 1 cut(s) 127
AoxI GGCC 3 cut(s) 192, 883, 961
ApaI GGGCCC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 794
AspA2I CCTAGG 2 cut(s) 458, 887
AspS9I GGNCC 7 cut(s) 192, 193, 532, 692, 884, 891, 962
AsuHPI GGTGA 3 cut(s) 132, 431, 919
AvaI CYCGRG 1 cut(s) 127
AvaII GGWCC 3 cut(s) 532, 692, 891
AvrII CCTAGG 2 cut(s) 458, 887
BaeGI GKGCMC 1 cut(s) 196
BanII GRGCYC 3 cut(s) 196, 605, 763
BarI GAAGNNNNNNTAC 2 cut(s) 762, 794
BbsI GAAGAC 2 cut(s) 101, 705
Bbv12I GWGCWC 2 cut(s) 605, 763
BbvCI CCTCAGC 1 cut(s) 816
BbvI GCAGC 1 cut(s) 144
BccI CCATC 3 cut(s) 212, 847, 943
BciT130I CCWGG 1 cut(s) 690
BciVI GTATCC 1 cut(s) 625
BfaI CTAG 4 cut(s) 27, 305, 459, 888
BfmI CTRYAG 1 cut(s) 726
BfuAI ACCTGC 1 cut(s) 95
BfuI GTATCC 1 cut(s) 625
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 2 cut(s) 36, 133
BlnI CCTAGG 2 cut(s) 458, 887
BlsI GCNGC 2 cut(s) 37, 134
Bme1390I CCNGG 1 cut(s) 690
Bme18I GGWCC 3 cut(s) 532, 692, 891
BmeT110I CYCGRG 1 cut(s) 127
BmgT120I GGNCC 7 cut(s) 192, 193, 532, 692, 884, 891, 962
BmiI GGNNCC 5 cut(s) 194, 195, 329, 435, 893
BmrFI CCNGG 1 cut(s) 690
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 2 cut(s) 240, 291
BmuI ACTGGG 1 cut(s) 669
BpiI GAAGAC 2 cut(s) 101, 705
BpmI CTGGAG 2 cut(s) 227, 478
Bpu10I CCTNAGC 1 cut(s) 816
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 458, 887
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 5 cut(s) 77, 157, 393, 901, 959
Bse1I ACTGG 2 cut(s) 495, 664
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 2 cut(s) 458, 887
BseGI GGATG 2 cut(s) 282, 826
BseLI CCNNNNNNNGG 5 cut(s) 77, 157, 393, 901, 959
BseMII CTCAG 1 cut(s) 807
BseNI ACTGG 2 cut(s) 495, 664
BseRI GAGGAG 1 cut(s) 104
BseSI GKGCMC 1 cut(s) 196
BseXI GCAGC 1 cut(s) 144
BshFI GGCC 3 cut(s) 194, 885, 963
BsiHKAI GWGCWC 2 cut(s) 605, 763
BsiHKCI CYCGRG 1 cut(s) 127
BslFI GGGAC 2 cut(s) 227, 877
BslI CCNNNNNNNGG 5 cut(s) 77, 157, 393, 901, 959
BsmFI GGGAC 2 cut(s) 227, 877
BsnI GGCC 3 cut(s) 194, 885, 963
BsoBI CYCGRG 1 cut(s) 127
Bsp120I GGGCCC 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 196, 605, 763
Bsp143I GATC 6 cut(s) 187, 198, 413, 613, 649, 744
BspACI CCGC 1 cut(s) 36
BspANI GGCC 3 cut(s) 194, 885, 963
BspCNI CTCAG 1 cut(s) 808
BspLI GGNNCC 5 cut(s) 194, 195, 329, 435, 893
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 1 cut(s) 657
BsrI ACTGG 2 cut(s) 495, 664
BssECI CCNNGG 2 cut(s) 458, 887
BssMI GATC 6 cut(s) 187, 198, 413, 613, 649, 744
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 2 cut(s) 458, 887
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 1 cut(s) 949
Bst6I CTCTTC 1 cut(s) 749
BstACI GRCGYC 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 723, 961
BstDEI CTNAG 1 cut(s) 816
BstF5I GGATG 2 cut(s) 282, 826
BstKTI GATC 6 cut(s) 190, 201, 416, 616, 652, 747
BstMBI GATC 6 cut(s) 187, 198, 413, 613, 649, 744
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 44
BstNI CCWGG 1 cut(s) 690
BstSCI CCNGG 1 cut(s) 688
BstSFI CTRYAG 1 cut(s) 726
BstSLI GKGCMC 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 144
BstV2I GAAGAC 2 cut(s) 101, 705
BstXI CCANNNNNNTGG 2 cut(s) 445, 664
BsuI GTATCC 1 cut(s) 625
BsuRI GGCC 3 cut(s) 194, 885, 963
BtsCI GGATG 2 cut(s) 282, 826
BtsIMutI CAGTG 2 cut(s) 502, 657
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 2 cut(s) 723, 961
CaiI CAGNNNCTG 2 cut(s) 264, 959
Cfr13I GGNCC 7 cut(s) 192, 193, 532, 692, 884, 891, 962
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 779
CviAII CATG 1 cut(s) 637
CviQI GTAC 1 cut(s) 779
DdeI CTNAG 1 cut(s) 816
DpnI GATC 6 cut(s) 189, 200, 415, 615, 651, 746
DpnII GATC 6 cut(s) 187, 198, 413, 613, 649, 744
Eam1104I CTCTTC 1 cut(s) 749
EarI CTCTTC 1 cut(s) 749
Ecl136II GAGCTC 2 cut(s) 603, 761
Eco130I CCWWGG 2 cut(s) 458, 887
Eco24I GRGCYC 3 cut(s) 196, 605, 763
Eco47I GGWCC 3 cut(s) 532, 692, 891
Eco53kI GAGCTC 2 cut(s) 603, 761
Eco57I CTGAAG 3 cut(s) 75, 581, 863
Eco88I CYCGRG 1 cut(s) 127
EcoICRI GAGCTC 2 cut(s) 603, 761
EcoO109I RGGNCCY 4 cut(s) 193, 532, 884, 891
EcoRII CCWGG 1 cut(s) 688
EcoT14I CCWWGG 2 cut(s) 458, 887
EcoT38I GRGCYC 3 cut(s) 196, 605, 763
ErhI CCWWGG 2 cut(s) 458, 887
FaeI CATG 1 cut(s) 640
FaiI YATR 9 cut(s) 186, 216, 248, 255, 297, 317, 354, 638, 728
FalI AAGNNNNNCTT 2 cut(s) 766, 798
FaqI GGGAC 2 cut(s) 227, 877
FatI CATG 1 cut(s) 636
FblI GTMKAC 1 cut(s) 859
Fnu4HI GCNGC 2 cut(s) 36, 133
FokI GGATG 2 cut(s) 269, 833
FriOI GRGCYC 3 cut(s) 196, 605, 763
Fsp4HI GCNGC 2 cut(s) 36, 133
FspBI CTAG 4 cut(s) 27, 305, 459, 888
GluI GCNGC 2 cut(s) 36, 133
GsuI CTGGAG 2 cut(s) 227, 478
HaeIII GGCC 3 cut(s) 194, 885, 963
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 1 cut(s) 640
HincII GTYRAC 1 cut(s) 860
HindII GTYRAC 1 cut(s) 860
HinfI GANTC 2 cut(s) 261, 668
HphI GGTGA 3 cut(s) 132, 431, 919
Hpy166II GTNNAC 4 cut(s) 148, 396, 779, 860
Hpy188I TCNGA 5 cut(s) 72, 260, 413, 613, 685
Hpy188III TCNNGA 4 cut(s) 206, 767, 799, 953
Hpy8I GTNNAC 4 cut(s) 148, 396, 779, 860
HpyAV CCTTC 8 cut(s) 50, 160, 296, 355, 495, 555, 792, 895
HpyCH4III ACNGT 1 cut(s) 949
HpyCH4IV ACGT 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 44
HpyF3I CTNAG 1 cut(s) 816
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 1 cut(s) 640
Kzo9I GATC 6 cut(s) 187, 198, 413, 613, 649, 744
LmnI GCTCC 3 cut(s) 73, 718, 812
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 2 cut(s) 240, 291
MaeI CTAG 4 cut(s) 27, 305, 459, 888
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 2 cut(s) 19, 826
MalI GATC 6 cut(s) 189, 200, 415, 615, 651, 746
MboI GATC 6 cut(s) 187, 198, 413, 613, 649, 744
MhlI GDGCHC 3 cut(s) 196, 605, 763
MroXI GAANNNNTTC 1 cut(s) 794
MseI TTAA 2 cut(s) 467, 624
MslI CAYNNNNRTG 1 cut(s) 662
MspR9I CCNGG 1 cut(s) 690
MvaI CCWGG 1 cut(s) 690
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 44
NdeII GATC 6 cut(s) 187, 198, 413, 613, 649, 744
NlaIII CATG 1 cut(s) 640
NlaIV GGNNCC 5 cut(s) 194, 195, 329, 435, 893
NmeAIII GCCGAG 1 cut(s) 494
NmuCI GTSAC 1 cut(s) 19
OliI CACNNNNGTG 1 cut(s) 662
PdmI GAANNNNTTC 1 cut(s) 794
PfeI GAWTC 2 cut(s) 261, 668
PflMI CCANNNNNTGG 1 cut(s) 959
PkrI GCNGC 2 cut(s) 37, 134
PpuMI RGGWCCY 2 cut(s) 532, 891
Psp124BI GAGCTC 2 cut(s) 605, 763
Psp5II RGGWCCY 2 cut(s) 532, 891
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 5 cut(s) 194, 195, 329, 435, 893
PspOMI GGGCCC 1 cut(s) 192
PspPI GGNCC 7 cut(s) 192, 193, 532, 692, 884, 891, 962
PspPPI RGGWCCY 2 cut(s) 532, 891
PstNI CAGNNNCTG 2 cut(s) 264, 959
RsaI GTAC 1 cut(s) 780
RsaNI GTAC 1 cut(s) 779
RseI CAYNNNNRTG 1 cut(s) 662
SacI GAGCTC 2 cut(s) 605, 763
SalI GTCGAC 1 cut(s) 858
SaqAI TTAA 2 cut(s) 467, 624
SatI GCNGC 2 cut(s) 36, 133
Sau3AI GATC 6 cut(s) 187, 198, 413, 613, 649, 744
Sau96I GGNCC 7 cut(s) 192, 193, 532, 692, 884, 891, 962
ScrFI CCNGG 1 cut(s) 690
SduI GDGCHC 3 cut(s) 196, 605, 763
SfaNI GCATC 2 cut(s) 240, 291
SfcI CTRYAG 1 cut(s) 726
SinI GGWCC 3 cut(s) 532, 692, 891
SmiMI CAYNNNNRTG 1 cut(s) 662
SsiI CCGC 1 cut(s) 36
SspMI CTAG 4 cut(s) 27, 305, 459, 888
SstI GAGCTC 2 cut(s) 605, 763
StyD4I CCNGG 1 cut(s) 688
StyI CCWWGG 2 cut(s) 458, 887
TaaI ACNGT 1 cut(s) 949
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 234, 859
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 2 cut(s) 261, 668
Tru1I TTAA 2 cut(s) 467, 624
Tru9I TTAA 2 cut(s) 467, 624
TscAI CASTG 2 cut(s) 502, 664
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 263, 537
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 2 cut(s) 502, 664
Van91I CCANNNNNTGG 1 cut(s) 959
VpaK11BI GGWCC 3 cut(s) 532, 692, 891
XmaJI CCTAGG 2 cut(s) 458, 887
XmiI GTMKAC 1 cut(s) 859
XmnI GAANNNNTTC 1 cut(s) 794
XspI CTAG 4 cut(s) 27, 305, 459, 888
ZraI GACGTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.