Rorug05G0194100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000169
Physical Location & Seq
Forward (+)
19085592 .. 19091650
6059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0194100.1

Sequence Viewer

Length: 1443 bp
ATGGCCAGAAAAGGAGAGAAGAGAGGGAGGGCTTGTGTGGTGGTGTTAGGTGACATTGGGCGCAGCCCTCGTATGCAATACCATGCTCTTTCGCTTGCCCGTCAGGCATCTTTGGAAGTAGATGTTGTTGCATATGGAGGTTCCGAACCGCATTCTGCTGTGTTGGAGCATCAATCTATTCACATACACAAAATGCCGCAGTGGCCAGCATTCCCCCGTGGTCTACCCAGCATACTTAAACCCTTTGTGCTTCTGCTGAAGCCAGTGGTTCAATTTATTGTGCTCCTTTGGTATCTTTGCGTTAAGATATCTGCTCCTGATGTTTTTCTAGTTCAGAATCCACCTTCTGTTCCAACCTTAGTCGCTGTAAAATGGGCAAGCTGGCTTAGGCAATCTGCATTTATAGTTGATTGGCATAATTTTGGATATACTTTACTGGCATTGTCTCTTGGAAGAAGTAGTCGATTTGTGGCAATATACCGTTGGGTAGAGTGGCAATTTGGAAGGATGGCAGATGGTTCACTATGTGTAACGAGGGCAATGCAACATGAATTGGCTCAAAATTGGGGAATTAAAGCAACAGTTCTATATGATCAGCCTCCTGAGTTTTTCCATCCCGCTTCACTTGAAGAACAGCATAAGTTGTTCTATAGATTAGATAAAAATCTGAGGCAGCCACTCGGTGTTGAAGATTGCACAAGCACTGGAATAGGGGAAGTGGTGAATAAGGACATGCAGGAGACTCTGTTTACCACCCTGGTTGACGCTGACATTGCTTCGAAGCCAAACCGGCCGGCACTGATAGTGAGCAGTACAAGCTGGACTCCTGATGAAGATTTTGGCATTCTCCTGGAAGCAGCTGTCATGTATGACAGGCGCGTTGCTGCTATTTTAAATGAAGACGATTCTAAGAAAGAAGAGGTTCTTTGGAAGGAAATGCAAAGTGGGAAGCAATACTTGTATCCAAGACTGTTATTTGTCATTACAGGTAAAGGGCCTGAAAAAGAAAAATATGAAGAAAAGATTAGAAGATTAAAACTCAAACGGGTGGCATTTCGTACTGCGTGGCTATCAGCTGAAGACTATCCACTGCTTCTTGGATCAGCAGATCTTGGTGTGTGCTTACACACTTCCTCATCAGGGTTGGATCTTCCCATGAAGGTGGTGGACATGTTTGGTTGTGGACTGCCGGTTTGCGCTGTTTCCTACTCATGCATCAAGGAACTAGTGCAAGTGGAGAAAAATGGTCTTCTATTTTCATCATCTTCAGAGCTAGCTGATGAACTTTTGATGCTGTTTAAGGGTTTTCCAGATGCTTGTGATTCATTGAAGGTTCTGAGGAATGGTGCACTGGACATGTCTTCGTCTGTGAAGTGGGCCACTGAGTGGGAAGAGCATGCTAAAGGATTAATCTTAGAGGTTATCTCTGGAAACTTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

480

Amino Acids

53.91

Weight (kDa)

6.44

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_trans_4_4 PF13579 34 - 193 4.4e-09 Glycosyl transferase 4-like domain
Glyco_transf_4 PF13439 35 - 193 1.3e-07 Glycosyltransferase Family 4
Glyco_trans_1_4 PF13692 307 - 433 8.4e-11 Glycosyl transferases group 1
Glycos_transf_1 PF00534 309 - 429 9.9e-10 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1386
AccI GTMKAC 1 cut(s) 223
AccII CGCG 1 cut(s) 879
AciI CCGC 3 cut(s) 149, 197, 618
AclWI GGATC 2 cut(s) 1108, 1155
AcoI YGGCCR 3 cut(s) 3, 203, 791
AcuI CTGAAG 3 cut(s) 278, 1098, 1251
AdeI CACNNNGTG 3 cut(s) 527, 683, 1386
AfaI GTAC 2 cut(s) 814, 1060
AfiI CCNNNNNNNGG 2 cut(s) 1140, 1386
AflIII ACRYGT 2 cut(s) 1170, 1356
AgsI TTSAA 4 cut(s) 272, 629, 689, 1330
AhlI ACTAGT 1 cut(s) 1225
AjnI CCWGG 2 cut(s) 756, 849
AluBI AGCT 6 cut(s) 381, 819, 860, 1076, 1273, 1277
AluI AGCT 6 cut(s) 381, 819, 860, 1076, 1273, 1277
Alw21I GWGCWC 2 cut(s) 285, 1351
Alw26I GTCTC 2 cut(s) 450, 734
Alw44I GTGCAC 1 cut(s) 1347
AlwI GGATC 2 cut(s) 1108, 1155
AoxI GGCC 5 cut(s) 3, 203, 791, 995, 1377
ApaLI GTGCAC 1 cut(s) 1347
ApeKI GCWGC 4 cut(s) 63, 673, 857, 884
ArsI GACNNNNNNTTYG 2 cut(s) 1176, 1208
AseI ATTAAT 1 cut(s) 1409
Asp700I GAANNNNTTC 1 cut(s) 921
AspLEI GCGC 3 cut(s) 63, 879, 1199
AspS9I GGNCC 2 cut(s) 995, 1377
AsuHPI GGTGA 2 cut(s) 62, 733
AsuII TTCGAA 1 cut(s) 779
AsuNHI GCTAGC 1 cut(s) 1273
BaeGI GKGCMC 1 cut(s) 1351
BalI TGGCCA 2 cut(s) 5, 205
BbsI GAAGAC 4 cut(s) 906, 1086, 1241, 1353
Bbv12I GWGCWC 2 cut(s) 285, 1351
BbvI GCAGC 4 cut(s) 75, 685, 869, 871
BccI CCATC 3 cut(s) 502, 509, 621
BcgI CGANNNNNNTGC 2 cut(s) 523, 557
BciT130I CCWGG 2 cut(s) 758, 851
BciVI GTATCC 1 cut(s) 972
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 2 cut(s) 450, 734
BcuI ACTAGT 1 cut(s) 1225
BfaI CTAG 3 cut(s) 329, 1226, 1274
BfmI CTRYAG 1 cut(s) 649
BfuI GTATCC 1 cut(s) 972
BglI GCCNNNNNGGC 3 cut(s) 104, 202, 790
BglII AGATCT 1 cut(s) 1108
BisI GCNGC 5 cut(s) 64, 197, 674, 858, 885
BlsI GCNGC 5 cut(s) 65, 198, 675, 859, 886
Bme1390I CCNGG 2 cut(s) 758, 851
BmgT120I GGNCC 2 cut(s) 995, 1377
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 2 cut(s) 758, 851
BmsI GCATC 5 cut(s) 116, 178, 1224, 1281, 1303
BmtI GCTAGC 1 cut(s) 1277
BpiI GAAGAC 4 cut(s) 906, 1086, 1241, 1353
BplI GAGNNNNNCTC 2 cut(s) 1409, 1441
Bpu10I CCTNAGC 1 cut(s) 386
Bpu14I TTCGAA 1 cut(s) 779
BsaBI GATNNNNATC 1 cut(s) 663
BsaJI CCNNGG 2 cut(s) 217, 756
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 731, 761
Bsc4I CCNNNNNNNGG 2 cut(s) 1140, 1386
Bse118I RCCGGY 3 cut(s) 789, 793, 1189
Bse1I ACTGG 4 cut(s) 263, 441, 709, 1356
Bse3DI GCAATG 2 cut(s) 546, 771
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 2 cut(s) 758, 851
BseDI CCNNGG 2 cut(s) 217, 756
BseGI GGATG 2 cut(s) 513, 613
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 2 cut(s) 1140, 1386
BseMI GCAATG 2 cut(s) 546, 771
BseMII CTCAG 4 cut(s) 594, 659, 1328, 1374
BseNI ACTGG 4 cut(s) 263, 441, 709, 1356
BseSI GKGCMC 1 cut(s) 1351
BseX3I CGGCCG 1 cut(s) 791
BseXI GCAGC 4 cut(s) 75, 685, 869, 871
BseYI CCCAGC 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 879
Bsh1285I CGRYCG 1 cut(s) 794
BshFI GGCC 5 cut(s) 5, 205, 793, 997, 1379
BsiEI CGRYCG 1 cut(s) 794
BsiHKAI GWGCWC 2 cut(s) 285, 1351
BsiSI CCGG 3 cut(s) 790, 794, 1190
BslI CCNNNNNNNGG 2 cut(s) 1140, 1386
BsmAI GTCTC 2 cut(s) 450, 734
BsmI GAATGC 3 cut(s) 151, 209, 843
BsnI GGCC 5 cut(s) 5, 205, 793, 997, 1379
Bsp119I TTCGAA 1 cut(s) 779
Bsp1286I GDGCHC 2 cut(s) 285, 1351
Bsp143I GATC 4 cut(s) 592, 1100, 1108, 1147
BspACI CCGC 3 cut(s) 149, 197, 618
BspANI GGCC 5 cut(s) 5, 205, 793, 997, 1379
BspCNI CTCAG 4 cut(s) 595, 660, 1329, 1375
BspFNI CGCG 1 cut(s) 879
BspLI GGNNCC 1 cut(s) 142
BspOI GCTAGC 1 cut(s) 1277
BspPI GGATC 2 cut(s) 1108, 1155
BspQI GCTCTTC 1 cut(s) 1386
BspT104I TTCGAA 1 cut(s) 779
BsrDI GCAATG 2 cut(s) 546, 771
BsrFI RCCGGY 3 cut(s) 789, 793, 1189
BsrI ACTGG 4 cut(s) 263, 441, 709, 1356
BssAI RCCGGY 3 cut(s) 789, 793, 1189
BssECI CCNNGG 2 cut(s) 217, 756
BssMI GATC 4 cut(s) 592, 1100, 1108, 1147
Bst2UI CCWGG 2 cut(s) 758, 851
Bst4CI ACNGT 3 cut(s) 482, 583, 972
Bst6I CTCTTC 3 cut(s) 14, 912, 1386
BstBI TTCGAA 1 cut(s) 779
BstC8I GCNNGC 7 cut(s) 96, 207, 379, 383, 795, 1275, 1398
BstDEI CTNAG 9 cut(s) 358, 386, 603, 668, 909, 1337, 1383, 1414, 1435
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 2 cut(s) 513, 613
BstFNI CGCG 1 cut(s) 879
BstHHI GCGC 3 cut(s) 63, 879, 1199
BstKTI GATC 4 cut(s) 595, 1103, 1111, 1150
BstMAI GTCTC 2 cut(s) 450, 734
BstMBI GATC 4 cut(s) 592, 1100, 1108, 1147
BstMCI CGRYCG 1 cut(s) 794
BstMWI GCNNNNNNNGC 5 cut(s) 104, 202, 773, 790, 816
BstNI CCWGG 2 cut(s) 758, 851
BstNSI RCATGY 4 cut(s) 736, 1174, 1360, 1400
BstSCI CCNGG 2 cut(s) 756, 849
BstSFI CTRYAG 1 cut(s) 649
BstSLI GKGCMC 1 cut(s) 1351
BstUI CGCG 1 cut(s) 879
BstV1I GCAGC 4 cut(s) 75, 685, 869, 871
BstV2I GAAGAC 4 cut(s) 906, 1086, 1241, 1353
BstX2I RGATCY 2 cut(s) 1108, 1147
BstXI CCANNNNNNTGG 1 cut(s) 1162
BstYI RGATCY 2 cut(s) 1108, 1147
BstZI CGGCCG 1 cut(s) 791
BsuI GTATCC 1 cut(s) 972
BsuRI GGCC 5 cut(s) 5, 205, 793, 997, 1379
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 513, 613
BtsI GCAGTG 2 cut(s) 206, 1088
BtsIMutI CAGTG 7 cut(s) 206, 270, 702, 797, 1088, 1349, 1380
Cac8I GCNNGC 7 cut(s) 96, 207, 379, 383, 795, 1275, 1398
CfoI GCGC 3 cut(s) 63, 879, 1199
Cfr10I RCCGGY 3 cut(s) 789, 793, 1189
Cfr13I GGNCC 2 cut(s) 995, 1377
CseI GACGC 1 cut(s) 773
Csp6I GTAC 2 cut(s) 813, 1059
CspCI CAANNNNNGTGG 2 cut(s) 742, 777
CviAII CATG 9 cut(s) 83, 548, 733, 865, 1156, 1171, 1212, 1357, 1397
CviQI GTAC 2 cut(s) 813, 1059
DdeI CTNAG 9 cut(s) 358, 386, 603, 668, 909, 1337, 1383, 1414, 1435
DpnI GATC 4 cut(s) 594, 1102, 1110, 1149
DpnII GATC 4 cut(s) 592, 1100, 1108, 1147
DraI TTTAAA 1 cut(s) 894
DraIII CACNNNGTG 3 cut(s) 527, 683, 1386
EaeI YGGCCR 3 cut(s) 3, 203, 791
EagI CGGCCG 1 cut(s) 791
Eam1104I CTCTTC 3 cut(s) 14, 912, 1386
EarI CTCTTC 3 cut(s) 14, 912, 1386
EclXI CGGCCG 1 cut(s) 791
Eco32I GATATC 1 cut(s) 309
Eco52I CGGCCG 1 cut(s) 791
Eco57I CTGAAG 3 cut(s) 278, 1098, 1251
EcoO109I RGGNCCY 1 cut(s) 995
EcoRII CCWGG 2 cut(s) 756, 849
EcoRV GATATC 1 cut(s) 309
EcoT22I ATGCAT 1 cut(s) 1217
FaeI CATG 9 cut(s) 86, 551, 736, 868, 1159, 1174, 1215, 1360, 1400
FalI AAGNNNNNCTT 4 cut(s) 909, 941, 941, 973
FatI CATG 9 cut(s) 82, 547, 732, 864, 1155, 1170, 1211, 1356, 1396
FauI CCCGC 1 cut(s) 625
FauNDI CATATG 1 cut(s) 133
FbaI TGATCA 1 cut(s) 592
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 5 cut(s) 64, 197, 674, 858, 885
FokI GGATG 2 cut(s) 520, 600
Fsp4HI GCNGC 5 cut(s) 64, 197, 674, 858, 885
FspBI CTAG 3 cut(s) 329, 1226, 1274
GlaI GCGC 3 cut(s) 62, 878, 1198
GluI GCNGC 5 cut(s) 64, 197, 674, 858, 885
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 5 cut(s) 5, 205, 793, 997, 1379
HapII CCGG 3 cut(s) 790, 794, 1190
HgaI GACGC 1 cut(s) 773
HhaI GCGC 3 cut(s) 63, 879, 1199
Hin1II CATG 9 cut(s) 86, 551, 736, 868, 1159, 1174, 1215, 1360, 1400
Hin6I GCGC 3 cut(s) 61, 877, 1197
HinP1I GCGC 3 cut(s) 61, 877, 1197
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HinfI GANTC 5 cut(s) 337, 742, 823, 905, 1322
HpaII CCGG 3 cut(s) 790, 794, 1190
HphI GGTGA 2 cut(s) 62, 733
Hpy166II GTNNAC 7 cut(s) 224, 521, 750, 763, 1168, 1184, 1349
Hpy188I TCNGA 5 cut(s) 145, 336, 669, 1270, 1338
Hpy188III TCNNGA 5 cut(s) 317, 602, 827, 1310, 1428
Hpy8I GTNNAC 7 cut(s) 224, 521, 750, 763, 1168, 1184, 1349
HpyAV CCTTC 5 cut(s) 354, 498, 925, 1153, 1324
HpyCH4III ACNGT 3 cut(s) 482, 583, 972
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 202, 773, 790, 816
HpyF3I CTNAG 9 cut(s) 358, 386, 603, 668, 909, 1337, 1383, 1414, 1435
Hsp92II CATG 9 cut(s) 86, 551, 736, 868, 1159, 1174, 1215, 1360, 1400
HspAI GCGC 3 cut(s) 61, 877, 1197
KroI GCCGGC 1 cut(s) 793
KroNI GCCGGC 1 cut(s) 795
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 4 cut(s) 592, 1100, 1108, 1147
LguI GCTCTTC 1 cut(s) 1386
LmnI GCTCC 3 cut(s) 166, 288, 319
Lsp1109I GCAGC 4 cut(s) 75, 685, 869, 871
LweI GCATC 5 cut(s) 116, 178, 1224, 1281, 1303
MaeI CTAG 3 cut(s) 329, 1226, 1274
MaeIII GTNAC 2 cut(s) 50, 529
MalI GATC 4 cut(s) 594, 1102, 1110, 1149
MboI GATC 4 cut(s) 592, 1100, 1108, 1147
MflI RGATCY 2 cut(s) 1108, 1147
MhlI GDGCHC 2 cut(s) 285, 1351
MlsI TGGCCA 2 cut(s) 5, 205
MluCI AATT 6 cut(s) 272, 418, 497, 551, 562, 570
MluNI TGGCCA 2 cut(s) 5, 205
MlyI GAGTC 2 cut(s) 736, 817
MmeI TCCRAC 3 cut(s) 144, 377, 1125
Mox20I TGGCCA 2 cut(s) 5, 205
Mph1103I ATGCAT 1 cut(s) 1217
MroNI GCCGGC 1 cut(s) 793
MroXI GAANNNNTTC 1 cut(s) 921
MscI TGGCCA 2 cut(s) 5, 205
MseI TTAA 7 cut(s) 237, 303, 573, 893, 1034, 1299, 1409
MslI CAYNNNNRTG 1 cut(s) 1160
Msp20I TGGCCA 2 cut(s) 5, 205
MspA1I CMGCKG 2 cut(s) 860, 1076
MspI CCGG 3 cut(s) 790, 794, 1190
MspR9I CCNGG 2 cut(s) 758, 851
Mva1269I GAATGC 3 cut(s) 151, 209, 843
MvaI CCWGG 2 cut(s) 758, 851
MvnI CGCG 1 cut(s) 879
MwoI GCNNNNNNNGC 5 cut(s) 104, 202, 773, 790, 816
NaeI GCCGGC 1 cut(s) 795
NdeI CATATG 1 cut(s) 133
NdeII GATC 4 cut(s) 592, 1100, 1108, 1147
NgoMIV GCCGGC 1 cut(s) 793
NheI GCTAGC 1 cut(s) 1273
NlaIII CATG 9 cut(s) 86, 551, 736, 868, 1159, 1174, 1215, 1360, 1400
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 50
NsiI ATGCAT 1 cut(s) 1217
NspI RCATGY 4 cut(s) 736, 1174, 1360, 1400
NspV TTCGAA 1 cut(s) 779
PaeI GCATGC 1 cut(s) 1400
PciI ACATGT 2 cut(s) 1170, 1356
PciSI GCTCTTC 1 cut(s) 1386
PctI GAATGC 3 cut(s) 151, 209, 843
PdiI GCCGGC 1 cut(s) 795
PdmI GAANNNNTTC 1 cut(s) 921
PfeI GAWTC 3 cut(s) 337, 905, 1322
PflMI CCANNNNNTGG 1 cut(s) 1386
PfoI TCCNGGA 1 cut(s) 849
PkrI GCNGC 5 cut(s) 65, 198, 675, 859, 886
PleI GAGTC 2 cut(s) 736, 817
PpsI GAGTC 2 cut(s) 736, 817
PscI ACATGT 2 cut(s) 1170, 1356
PshBI ATTAAT 1 cut(s) 1409
Psp6I CCWGG 2 cut(s) 756, 849
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 2 cut(s) 756, 849
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 2 cut(s) 995, 1377
PsuI RGATCY 2 cut(s) 1108, 1147
PvuII CAGCTG 2 cut(s) 860, 1076
RsaI GTAC 2 cut(s) 814, 1060
RsaNI GTAC 2 cut(s) 813, 1059
RseI CAYNNNNRTG 1 cut(s) 1160
SapI GCTCTTC 1 cut(s) 1386
SaqAI TTAA 7 cut(s) 237, 303, 573, 893, 1034, 1299, 1409
SatI GCNGC 5 cut(s) 64, 197, 674, 858, 885
Sau3AI GATC 4 cut(s) 592, 1100, 1108, 1147
Sau96I GGNCC 2 cut(s) 995, 1377
SchI GAGTC 2 cut(s) 736, 817
ScrFI CCNGG 2 cut(s) 758, 851
SduI GDGCHC 2 cut(s) 285, 1351
SfaNI GCATC 5 cut(s) 116, 178, 1224, 1281, 1303
SfcI CTRYAG 1 cut(s) 649
SfuI TTCGAA 1 cut(s) 779
SmiMI CAYNNNNRTG 1 cut(s) 1160
SpeI ACTAGT 1 cut(s) 1225
SphI GCATGC 1 cut(s) 1400
Sse9I AATT 6 cut(s) 272, 418, 497, 551, 562, 570
SsiI CCGC 3 cut(s) 149, 197, 618
SspMI CTAG 3 cut(s) 329, 1226, 1274
StyD4I CCNGG 2 cut(s) 756, 849
TaaI ACNGT 3 cut(s) 482, 583, 972
TaqI TCGA 2 cut(s) 463, 779
TasI AATT 6 cut(s) 272, 418, 497, 551, 562, 570
TatI WGTACW 1 cut(s) 812
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 3 cut(s) 337, 905, 1322
Tru1I TTAA 7 cut(s) 237, 303, 573, 893, 1034, 1299, 1409
Tru9I TTAA 7 cut(s) 237, 303, 573, 893, 1034, 1299, 1409
TscAI CASTG 7 cut(s) 206, 270, 709, 804, 1095, 1356, 1387
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 4 cut(s) 63, 673, 857, 884
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 8 cut(s) 564, 846, 912, 1029, 1172, 1248, 1296, 1314
TspRI CASTG 7 cut(s) 206, 270, 709, 804, 1095, 1356, 1387
Van91I CCANNNNNTGG 1 cut(s) 1386
VneI GTGCAC 1 cut(s) 1347
VspI ATTAAT 1 cut(s) 1409
XceI RCATGY 4 cut(s) 736, 1174, 1360, 1400
XcmI CCANNNNNNNNNTGG 1 cut(s) 1162
XmiI GTMKAC 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 921
XspI CTAG 3 cut(s) 329, 1226, 1274
Zsp2I ATGCAT 1 cut(s) 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.