Rmu_sc0001643.1_g000014

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001643.1
OG0000169
Physical Location & Seq
Forward (+)
66194 .. 66790
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001643.1_g000014.1.cds

Sequence Viewer

Length: 597 bp
atggcctccatagatgttgtcacaacaagttttgctgcttctcttactattgcttcgggtggtagcgccccggatctgggtaagattggtggtggtccgttgcgcaagtcatctaagtcttttctacttggtacgcctctgaccctcaagccggtggatcccaaagctttcaaggctcacttccaccatacttggatggtggataaggattttagggtccaggaaaaggtaggcgatatgttcctgttctcctttgaatcgcttcgtgatcggaacaagatactacgcagaggagtttggtcttttgatcgagctcctgtgtgttttgaagattatgatggggtaaagcccttacatgaagcccaattcaagtatctacgtgtgtgggttagagtttcggagattcctcctttatatgaagaacctgagaattttactcttataggtaatctcttgggtggtttcttagactatgataagaagaaagtcaagaacggtgggattcagatcttcttcacccatgatatctcgaaaccattcttgcttgagcggaaaagtttcttggatgttggcatcgaaccagtgcttcaattttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

198

Amino Acids

22.41

Weight (kDa)

8.91

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 550
AciI CCGC 1 cut(s) 550
AclWI GGATC 3 cut(s) 81, 152, 165
AcsI RAATTY 1 cut(s) 430
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 4 cut(s) 76, 77, 151, 226
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 5 cut(s) 172, 257, 329, 370, 590
AjnI CCWGG 1 cut(s) 219
AjuI GAANNNNNNNTTGG 2 cut(s) 545, 577
AluBI AGCT 2 cut(s) 167, 314
AluI AGCT 2 cut(s) 167, 314
Alw21I GWGCWC 1 cut(s) 316
AlwI GGATC 3 cut(s) 81, 152, 165
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 430
Asp700I GAANNNNTTC 3 cut(s) 261, 536, 557
AspLEI GCGC 2 cut(s) 68, 105
AspS9I GGNCC 2 cut(s) 95, 217
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 508
AvaII GGWCC 2 cut(s) 95, 217
BamHI GGATCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 22
BccI CCATC 2 cut(s) 190, 332
BciT130I CCWGG 1 cut(s) 221
BcnI CCSGG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 69
BglII AGATCT 1 cut(s) 507
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 71, 221
Bme18I GGWCC 2 cut(s) 95, 217
BmgT120I GGNCC 2 cut(s) 95, 217
BmiI GGNNCC 2 cut(s) 159, 218
BmrFI CCNGG 2 cut(s) 71, 221
BmsI GCATC 1 cut(s) 582
BpuEI CTTGAG 2 cut(s) 131, 566
BpuMI CCSGG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 77, 151, 226
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 581
Bse8I GATNNNNATC 1 cut(s) 506
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 201, 571
BseJI GATNNNNATC 1 cut(s) 506
BseLI CCNNNNNNNGG 4 cut(s) 76, 77, 151, 226
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 581
BseRI GAGGAG 1 cut(s) 306
BseXI GCAGC 1 cut(s) 22
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 2 cut(s) 71, 152
BslI CCNNNNNNNGG 4 cut(s) 76, 77, 151, 226
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 5 cut(s) 73, 157, 268, 307, 507
BspACI CCGC 1 cut(s) 550
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 159, 218
BspPI GGATC 3 cut(s) 81, 152, 165
BsrBI CCGCTC 1 cut(s) 550
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 1 cut(s) 581
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 5 cut(s) 73, 157, 268, 307, 507
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 497
BstBAI YACGTR 1 cut(s) 380
BstDEI CTNAG 3 cut(s) 114, 426, 466
BstF5I GGATG 2 cut(s) 201, 571
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 68, 105
BstKTI GATC 5 cut(s) 76, 160, 271, 310, 510
BstMBI GATC 5 cut(s) 73, 157, 268, 307, 507
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 69, 219
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 3 cut(s) 73, 157, 507
BstYI RGATCY 3 cut(s) 73, 157, 507
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 201, 571
BtsIMutI CAGTG 1 cut(s) 588
CfoI GCGC 2 cut(s) 68, 105
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 95, 217
Csp6I GTAC 1 cut(s) 132
CspCI CAANNNNNGTGG 4 cut(s) 173, 208, 478, 513
CviAII CATG 2 cut(s) 356, 521
CviJI RGCY 7 cut(s) 5, 151, 167, 176, 314, 349, 362
CviKI_1 RGCY 7 cut(s) 5, 151, 167, 176, 314, 349, 362
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 3 cut(s) 114, 426, 466
DpnI GATC 5 cut(s) 75, 159, 270, 309, 509
DpnII GATC 5 cut(s) 73, 157, 268, 307, 507
Ecl136II GAGCTC 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 316
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 2 cut(s) 95, 217
Eco53kI GAGCTC 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 219
EcoRV GATATC 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 316
FaeI CATG 2 cut(s) 359, 524
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FatI CATG 2 cut(s) 355, 520
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 208, 578
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 36
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 2 cut(s) 67, 104
GluI GCNGC 1 cut(s) 36
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 71, 152
HhaI GCGC 2 cut(s) 68, 105
Hin1II CATG 2 cut(s) 359, 524
Hin6I GCGC 2 cut(s) 66, 103
HinP1I GCGC 2 cut(s) 66, 103
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 3 cut(s) 257, 403, 502
HpaII CCGG 2 cut(s) 71, 152
HphI GGTGA 1 cut(s) 508
Hpy188I TCNGA 4 cut(s) 141, 273, 400, 507
Hpy188III TCNNGA 3 cut(s) 266, 490, 529
HpyCH4III ACNGT 1 cut(s) 497
HpyCH4IV ACGT 1 cut(s) 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 3 cut(s) 114, 426, 466
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 2 cut(s) 359, 524
HspAI GCGC 2 cut(s) 66, 103
Kzo9I GATC 5 cut(s) 73, 157, 268, 307, 507
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 8 cut(s) 62, 84, 165, 206, 233, 257, 330, 438
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 582
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 1 cut(s) 19
MalI GATC 5 cut(s) 75, 159, 270, 309, 509
MbiI CCGCTC 1 cut(s) 550
MboI GATC 5 cut(s) 73, 157, 268, 307, 507
MboII GAAGA 5 cut(s) 341, 431, 493, 502, 505
MflI RGATCY 3 cut(s) 73, 157, 507
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 3 cut(s) 365, 430, 590
MnlI CCTC 5 cut(s) 16, 147, 155, 284, 417
MroXI GAANNNNTTC 3 cut(s) 261, 536, 557
MspI CCGG 2 cut(s) 71, 152
MspR9I CCNGG 2 cut(s) 71, 221
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 173
NciI CCSGG 1 cut(s) 71
NdeII GATC 5 cut(s) 73, 157, 268, 307, 507
NlaIII CATG 2 cut(s) 359, 524
NlaIV GGNNCC 2 cut(s) 159, 218
NmuCI GTSAC 1 cut(s) 19
NsbI TGCGCA 1 cut(s) 104
PdmI GAANNNNTTC 3 cut(s) 261, 536, 557
PfeI GAWTC 3 cut(s) 257, 403, 502
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 1 cut(s) 37
Ppu21I YACGTR 1 cut(s) 380
Psp124BI GAGCTC 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 159, 218
PspPI GGNCC 2 cut(s) 95, 217
PsuI RGATCY 3 cut(s) 73, 157, 507
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SacI GAGCTC 1 cut(s) 316
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 5 cut(s) 73, 157, 268, 307, 507
Sau96I GGNCC 2 cut(s) 95, 217
ScrFI CCNGG 2 cut(s) 71, 221
SduI GDGCHC 1 cut(s) 316
SetI ASST 6 cut(s) 169, 231, 316, 382, 427, 448
SfaNI GCATC 1 cut(s) 582
SinI GGWCC 2 cut(s) 95, 217
SmlI CTYRAG 2 cut(s) 146, 545
SmoI CTYRAG 2 cut(s) 146, 545
Sse9I AATT 3 cut(s) 365, 430, 590
SsiI CCGC 1 cut(s) 550
SstI GAGCTC 1 cut(s) 316
StyD4I CCNGG 2 cut(s) 69, 219
TaaI ACNGT 1 cut(s) 497
TaiI ACGT 1 cut(s) 382
TaqI TCGA 3 cut(s) 310, 530, 576
TasI AATT 3 cut(s) 365, 430, 590
TfiI GAWTC 3 cut(s) 257, 403, 502
TscAI CASTG 1 cut(s) 588
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 372, 432
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 588
VpaK11BI GGWCC 2 cut(s) 95, 217
XapI RAATTY 1 cut(s) 430
XmnI GAANNNNTTC 3 cut(s) 261, 536, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.