Rorug02G0396100

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
50678224 .. 50679876
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0396100.1

Sequence Viewer

Length: 366 bp
ATGAATGCAAAGAGCAATTCTTATTCTATAGGCTCCATCCAGGAATTTCCAATGGAGATGAACGGTGCTCCTTACGGCTTCATTCATTTGAAACAGCAAACGTTCGAGCACTTTATCACACTCGTGCAAGACTTTGTGAATATTAGCTGGGCTGCTGTTGAGCATGCCAATGATCAAAGAACTAAGGATAATGATGCTAACTCTCAAAATCGAATCATTAGTTATGTGGAAGTGGATGAGGAGCTAAACAATGCATGGCCTTTGTTTATGACACTCTGGTTTGATTGTTGCCTTGATGATGTGGTCGATAAAAAATCTCCAGCAAAGAGTTATCAGGACTTTTGTAATGATTTTTATCGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

14.13

Weight (kDa)

4.52

Isoelectric Point (pI)

29.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 101
AcsI RAATTY 1 cut(s) 44
AgsI TTSAA 1 cut(s) 91
AjnI CCWGG 1 cut(s) 39
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 2 cut(s) 147, 244
AluI AGCT 2 cut(s) 147, 244
Alw21I GWGCWC 2 cut(s) 70, 111
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 44
BauI CACGAG 1 cut(s) 122
Bbv12I GWGCWC 2 cut(s) 70, 111
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 44
BceAI ACGGC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 41
BclI TGATCA 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 354
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 1 cut(s) 41
BseGI GGATG 2 cut(s) 36, 241
BseJI GATNNNNATC 1 cut(s) 354
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 139
BseYI CCCAGC 1 cut(s) 147
BshFI GGCC 1 cut(s) 259
BsiHKAI GWGCWC 2 cut(s) 70, 111
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 259
Bsp1286I GDGCHC 2 cut(s) 70, 111
Bsp143I GATC 1 cut(s) 172
BspANI GGCC 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 34
BssMI GATC 1 cut(s) 172
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 2 cut(s) 36, 241
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstNI CCWGG 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 39
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 2 cut(s) 36, 241
Cac8I GCNNGC 1 cut(s) 165
CviAII CATG 2 cut(s) 164, 255
CviJI RGCY 6 cut(s) 33, 78, 147, 152, 244, 259
CviKI_1 RGCY 6 cut(s) 33, 78, 147, 152, 244, 259
DdeI CTNAG 1 cut(s) 183
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 256
FaeI CATG 2 cut(s) 167, 258
FaiI YATR 6 cut(s) 29, 165, 225, 256, 269, 362
FatI CATG 2 cut(s) 163, 254
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 2 cut(s) 23, 248
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
GsaI CCCAGC 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 1 cut(s) 259
Hin1II CATG 2 cut(s) 167, 258
HinfI GANTC 1 cut(s) 213
Hpy188III TCNNGA 1 cut(s) 335
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 3 cut(s) 8, 127, 254
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 2 cut(s) 167, 258
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 3 cut(s) 38, 73, 241
LpnPI CCDG 6 cut(s) 26, 53, 133, 262, 320, 333
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 184
MaeII ACGT 1 cut(s) 101
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 70, 111
MluCI AATT 2 cut(s) 16, 44
MnlI CCTC 1 cut(s) 232
Mph1103I ATGCAT 1 cut(s) 256
MslI CAYNNNNRTG 2 cut(s) 122, 168
MspR9I CCNGG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 41
NdeII GATC 1 cut(s) 172
NlaIII CATG 2 cut(s) 167, 258
NlaIV GGNNCC 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 256
NspI RCATGY 1 cut(s) 167
OliI CACNNNNGTG 1 cut(s) 122
PaeI GCATGC 1 cut(s) 167
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 213
PfoI TCCNGGA 1 cut(s) 39
PkrI GCNGC 1 cut(s) 154
Psp1406I AACGTT 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 34
RseI CAYNNNNRTG 2 cut(s) 122, 168
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 2 cut(s) 70, 111
SetI ASST 3 cut(s) 104, 149, 246
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 27
SmiMI CAYNNNNRTG 2 cut(s) 122, 168
SphI GCATGC 1 cut(s) 167
Sse9I AATT 2 cut(s) 16, 44
SspI AATATT 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 104
TaqI TCGA 3 cut(s) 105, 211, 306
TasI AATT 2 cut(s) 16, 44
TfiI GAWTC 1 cut(s) 213
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 4 cut(s) 17, 70, 74, 74
XapI RAATTY 1 cut(s) 44
XceI RCATGY 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.