Rmu_sc0003605.1_g000048

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003605.1
OG0000169
Physical Location & Seq
Forward (+)
192269 .. 193542
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003605.1_g000048.1.cds

Sequence Viewer

Length: 1011 bp
atggcctccattgatgttgttacagcgagtttcactgcctctcttgctcttgctgaagggggtacagcccttgatctggagaagattggcagaggtcctatgcgcaggtcttcccaatcttttcttattagtaagcggttgaccagaaagccaatcgatccaaaggccttcacgtctcacttcaatcgaacttggatggtggagaaggaatttagggttcaggaacgggctgcccctgtctgttttgaagaatatgatggtgttaagccactgcatgaaattcagttcaagcatctccggatctggactaaggtttccggcatcccacctttatatgaagaacctgagaatcttacgctgattggtaacctattgggtggttttttggactacgacaagaaggagttcaggaaagggtcgattagggttttgttcacttacgacatctctaaaccgatcctgcttgaaagaagagttttcttggatactggggttgaacctgttctacaattccagttcgagcatctgaaagggagatgttctcaatgtggactcatcactcatgcggggcttgcttgtgataagtgggatctcttcactgcctccttgtctatcccaaagaagaaaaagcccgtcttccgccgagtggagcgtccgagttctggtcctccttctcctacagatctggttcctgtatgcagcagaagcaggaagctttgccttccaagaaacgggagcggaatggggattgcaatccctctccaaaagaaattcaagacaatcttgggtggcaagattcctatactgcaggcagaagcactcggcctcattgaggaggatagtgatgttactttggtaactctaaaaaagaagtctggcaggccttttggaagcaagaataaaattcagcgtgccaacaagaagactaatggtgctcctctgaaggttacttatcctactatcactggatcagttcccagccctagggataagggcaaaggaaagctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

336

Amino Acids

37.4

Weight (kDa)

9.91

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 104
Acc36I ACCTGC 1 cut(s) 96
AccBSI CCGCTC 1 cut(s) 738
AccIII TCCGGA 1 cut(s) 297
AciI CCGC 4 cut(s) 136, 566, 640, 738
AclWI GGATC 5 cut(s) 152, 308, 451, 597, 976
AcsI RAATTY 4 cut(s) 209, 279, 770, 903
AcuI CTGAAG 2 cut(s) 75, 962
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 6 cut(s) 76, 646, 662, 731, 832, 984
AgsI TTSAA 6 cut(s) 184, 248, 289, 467, 497, 775
AjiI CACGTC 1 cut(s) 174
AluBI AGCT 2 cut(s) 715, 1006
AluI AGCT 2 cut(s) 715, 1006
Alw21I GWGCWC 1 cut(s) 937
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 5 cut(s) 152, 308, 451, 597, 976
Aor13HI TCCGGA 1 cut(s) 297
AoxI GGCC 4 cut(s) 3, 165, 823, 881
ApeKI GCWGC 2 cut(s) 230, 699
ApoI RAATTY 4 cut(s) 209, 279, 770, 903
Asp700I GAANNNNTTC 2 cut(s) 404, 501
AspA2I CCTAGG 1 cut(s) 983
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 95, 665
AvaII GGWCC 2 cut(s) 95, 665
AvrII CCTAGG 1 cut(s) 983
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BbsI GAAGAC 3 cut(s) 102, 628, 929
Bbv12I GWGCWC 1 cut(s) 937
BbvI GCAGC 2 cut(s) 217, 711
BccI CCATC 2 cut(s) 190, 251
BciVI GTATCC 1 cut(s) 478
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 1 cut(s) 984
BfmI CTRYAG 2 cut(s) 678, 806
BfuAI ACCTGC 1 cut(s) 96
BfuI GTATCC 1 cut(s) 478
BglII AGATCT 1 cut(s) 682
BisI GCNGC 2 cut(s) 231, 700
BlnI CCTAGG 1 cut(s) 983
BlsI GCNGC 2 cut(s) 232, 701
Bme18I GGWCC 2 cut(s) 95, 665
BmgBI CACGTC 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 95, 665
BmiI GGNNCC 1 cut(s) 690
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 3 cut(s) 301, 330, 532
BmuI ACTGGG 1 cut(s) 498
BpiI GAAGAC 3 cut(s) 102, 628, 929
BplI GAGNNNNNCTC 2 cut(s) 526, 558
BpmI CTGGAG 1 cut(s) 98
Bsa29I ATCGAT 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 752
BsaJI CCNNGG 1 cut(s) 983
BsaWI WCCGGW 1 cut(s) 297
Bsc4I CCNNNNNNNGG 6 cut(s) 76, 646, 662, 731, 832, 984
Bse1I ACTGG 3 cut(s) 493, 514, 970
Bse8I GATNNNNATC 1 cut(s) 752
BseAI TCCGGA 1 cut(s) 297
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 983
BseGI GGATG 2 cut(s) 201, 321
BseJI GATNNNNATC 1 cut(s) 752
BseLI CCNNNNNNNGG 6 cut(s) 76, 646, 662, 731, 832, 984
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 3 cut(s) 493, 514, 970
BseRI GAGGAG 2 cut(s) 848, 927
BseXI GCAGC 2 cut(s) 217, 711
BseYI CCCAGC 1 cut(s) 977
BshFI GGCC 4 cut(s) 5, 167, 825, 883
BshVI ATCGAT 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 937
BsiSI CCGG 2 cut(s) 298, 318
BslI CCNNNNNNNGG 6 cut(s) 76, 646, 662, 731, 832, 984
BsmAI GTCTC 1 cut(s) 180
BsmBI CGTCTC 1 cut(s) 180
BsnI GGCC 4 cut(s) 5, 167, 825, 883
Bsp1286I GDGCHC 1 cut(s) 937
Bsp13I TCCGGA 1 cut(s) 297
Bsp143I GATC 7 cut(s) 73, 157, 300, 456, 589, 682, 968
BspACI CCGC 4 cut(s) 136, 566, 640, 738
BspANI GGCC 4 cut(s) 5, 167, 825, 883
BspCNI CTCAG 1 cut(s) 337
BspDI ATCGAT 1 cut(s) 156
BspEI TCCGGA 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 690
BspMAI CTGCAG 1 cut(s) 810
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 5 cut(s) 152, 308, 451, 597, 976
BsrBI CCGCTC 1 cut(s) 738
BsrI ACTGG 3 cut(s) 493, 514, 970
BssECI CCNNGG 1 cut(s) 983
BssMI GATC 7 cut(s) 73, 157, 300, 456, 589, 682, 968
BssT1I CCWWGG 1 cut(s) 983
Bst6I CTCTTC 2 cut(s) 466, 599
BstC8I GCNNGC 4 cut(s) 573, 810, 881, 912
BstDEI CTNAG 2 cut(s) 309, 345
BstEII GGTNACC 1 cut(s) 365
BstENI CCTNNNNNAGG 1 cut(s) 830
BstF5I GGATG 2 cut(s) 201, 321
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 7 cut(s) 76, 160, 303, 459, 592, 685, 971
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 7 cut(s) 73, 157, 300, 456, 589, 682, 968
BstMWI GCNNNNNNNGC 3 cut(s) 44, 572, 705
BstPI GGTNACC 1 cut(s) 365
BstSFI CTRYAG 2 cut(s) 678, 806
BstV1I GCAGC 2 cut(s) 217, 711
BstV2I GAAGAC 3 cut(s) 102, 628, 929
BstX2I RGATCY 3 cut(s) 300, 589, 682
BstYI RGATCY 3 cut(s) 300, 589, 682
Bsu15I ATCGAT 1 cut(s) 156
BsuI GTATCC 1 cut(s) 478
BsuRI GGCC 4 cut(s) 5, 167, 825, 883
BsuTUI ATCGAT 1 cut(s) 156
BtrI CACGTC 1 cut(s) 174
BtsCI GGATG 2 cut(s) 201, 321
BtsI GCAGTG 3 cut(s) 33, 269, 597
BtsIMutI CAGTG 4 cut(s) 33, 269, 597, 963
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 4 cut(s) 573, 810, 881, 912
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 95, 665
ClaI ATCGAT 1 cut(s) 156
CseI GACGC 1 cut(s) 641
Csp6I GTAC 1 cut(s) 63
CviAII CATG 2 cut(s) 275, 563
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 2 cut(s) 309, 345
DpnI GATC 7 cut(s) 75, 159, 302, 458, 591, 684, 970
DpnII GATC 7 cut(s) 73, 157, 300, 456, 589, 682, 968
Eam1104I CTCTTC 2 cut(s) 466, 599
EarI CTCTTC 2 cut(s) 466, 599
EciI GGCGGA 1 cut(s) 629
Eco130I CCWWGG 1 cut(s) 983
Eco147I AGGCCT 2 cut(s) 167, 883
Eco47I GGWCC 2 cut(s) 95, 665
Eco57I CTGAAG 2 cut(s) 75, 962
Eco91I GGTNACC 1 cut(s) 365
EcoNI CCTNNNNNAGG 1 cut(s) 830
EcoO109I RGGNCCY 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 983
ErhI CCWWGG 1 cut(s) 983
Esp3I CGTCTC 1 cut(s) 180
FaeI CATG 2 cut(s) 278, 566
FaiI YATR 8 cut(s) 101, 255, 276, 334, 336, 564, 697, 803
FalI AAGNNNNNCTT 5 cut(s) 620, 652, 767, 799, 990
FatI CATG 2 cut(s) 274, 562
FauI CCCGC 1 cut(s) 559
Fnu4HI GCNGC 2 cut(s) 231, 700
FokI GGATG 2 cut(s) 208, 308
Fsp4HI GCNGC 2 cut(s) 231, 700
FspBI CTAG 1 cut(s) 984
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 1 cut(s) 104
GluI GCNGC 2 cut(s) 231, 700
GsaI CCCAGC 1 cut(s) 981
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 4 cut(s) 5, 167, 825, 883
HapII CCGG 2 cut(s) 298, 318
HgaI GACGC 1 cut(s) 641
HhaI GCGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 278, 566
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HindIII AAGCTT 2 cut(s) 713, 1004
HinfI GANTC 3 cut(s) 349, 552, 796
HpaII CCGG 2 cut(s) 298, 318
Hpy166II GTNNAC 3 cut(s) 141, 435, 551
Hpy188I TCNGA 3 cut(s) 528, 657, 942
Hpy188III TCNNGA 6 cut(s) 77, 221, 298, 304, 409, 775
Hpy8I GTNNAC 3 cut(s) 141, 435, 551
HpyAV CCTTC 7 cut(s) 50, 178, 199, 394, 681, 731, 937
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 4 cut(s) 274, 699, 752, 808
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 572, 705
HpyF3I CTNAG 2 cut(s) 309, 345
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 2 cut(s) 278, 566
HspAI GCGC 1 cut(s) 103
Kpn2I TCCGGA 1 cut(s) 297
Kzo9I GATC 7 cut(s) 73, 157, 300, 456, 589, 682, 968
LmnI GCTCC 3 cut(s) 649, 735, 940
Lsp1109I GCAGC 2 cut(s) 217, 711
LweI GCATC 3 cut(s) 301, 330, 532
MaeI CTAG 1 cut(s) 984
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 5 cut(s) 19, 365, 847, 856, 946
MalI GATC 7 cut(s) 75, 159, 302, 458, 591, 684, 970
MbiI CCGCTC 1 cut(s) 738
MboI GATC 7 cut(s) 73, 157, 300, 456, 589, 682, 968
MboII GAAGA 9 cut(s) 94, 102, 260, 350, 483, 586, 628, 634, 934
MflI RGATCY 3 cut(s) 300, 589, 682
MhlI GDGCHC 1 cut(s) 937
MluCI AATT 5 cut(s) 209, 279, 509, 770, 903
MlyI GAGTC 1 cut(s) 546
MroI TCCGGA 1 cut(s) 297
MroXI GAANNNNTTC 2 cut(s) 404, 501
MseI TTAA 1 cut(s) 264
MspI CCGG 2 cut(s) 298, 318
MwoI GCNNNNNNNGC 3 cut(s) 44, 572, 705
NdeII GATC 7 cut(s) 73, 157, 300, 456, 589, 682, 968
NlaIII CATG 2 cut(s) 278, 566
NlaIV GGNNCC 1 cut(s) 690
NmeAIII GCCGAG 2 cut(s) 668, 801
NsbI TGCGCA 1 cut(s) 104
PceI AGGCCT 2 cut(s) 167, 883
PdmI GAANNNNTTC 2 cut(s) 404, 501
PfeI GAWTC 2 cut(s) 349, 796
PkrI GCNGC 2 cut(s) 232, 701
PleI GAGTC 1 cut(s) 546
PpsI GAGTC 1 cut(s) 546
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
PspEI GGTNACC 1 cut(s) 365
PspFI CCCAGC 1 cut(s) 977
PspN4I GGNNCC 1 cut(s) 690
PspPI GGNCC 2 cut(s) 95, 665
PspPPI RGGWCCY 1 cut(s) 95
PsrI GAACNNNNNNTAC 2 cut(s) 489, 521
PstI CTGCAG 1 cut(s) 810
PsuI RGATCY 3 cut(s) 300, 589, 682
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 2 cut(s) 231, 700
Sau3AI GATC 7 cut(s) 73, 157, 300, 456, 589, 682, 968
Sau96I GGNCC 2 cut(s) 95, 665
SchI GAGTC 1 cut(s) 546
SduI GDGCHC 1 cut(s) 937
SfaNI GCATC 3 cut(s) 301, 330, 532
SfcI CTRYAG 2 cut(s) 678, 806
SinI GGWCC 2 cut(s) 95, 665
Sse9I AATT 5 cut(s) 209, 279, 509, 770, 903
SseBI AGGCCT 2 cut(s) 167, 883
SsiI CCGC 4 cut(s) 136, 566, 640, 738
SspMI CTAG 1 cut(s) 984
StuI AGGCCT 2 cut(s) 167, 883
StyI CCWWGG 1 cut(s) 983
TaiI ACGT 1 cut(s) 176
TaqI TCGA 4 cut(s) 156, 187, 419, 519
TasI AATT 5 cut(s) 209, 279, 509, 770, 903
TfiI GAWTC 2 cut(s) 349, 796
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 4 cut(s) 40, 276, 604, 970
TseI GCWGC 2 cut(s) 230, 699
TspDTI ATGAA 2 cut(s) 291, 351
TspRI CASTG 4 cut(s) 40, 276, 604, 970
VpaK11BI GGWCC 2 cut(s) 95, 665
XagI CCTNNNNNAGG 1 cut(s) 830
XapI RAATTY 4 cut(s) 209, 279, 770, 903
XmaJI CCTAGG 1 cut(s) 983
XmnI GAANNNNTTC 2 cut(s) 404, 501
XspI CTAG 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.