Rmu_sc0035139.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035139.1
OG0000169
Physical Location & Seq
Reverse (-)
1 .. 1089
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035139.1_g000001.1.cds

Sequence Viewer

Length: 856 bp
atggcctccatagatgctatcatagaaaattttgctgtttctcttgccctcgatgagggtggtagcgcctcagatctgggcaaaattggtggtggtccgaaggtggataaggattttagggttcaggaaaaggctggagatgtgaacctgttctcctttgaatcggttcgtgatcgtaacaagatacttcgaggaagggtttggtcctttgatcgagctccagtttgttttgaagaatatgatggcgtaaagccgctgcgtgaagcccaattcaagcatcttcgtgtatgggttagggtttcagtgatccctcctttgtatgaagaatttgagaattttactcttattgataatctcttgggtggtttcttagactatgataagaaggaattcaagaagggtgtgattcggatcttctttacccatgatatctccaaactgttcttacttgagtggaaagtttttttggatgttagtgttgaacttgtgcagcaatttcagtttgagcatctgaaagggagatgctcacattatggactagtcacgcatgctgggattccatgtgaggagccgaacactacaatcttgacgcttaggcgtcctattcccccatctacttcgcctactggttcggacccggatgctagcaatggtgagaatattgtttcagcaatggaacatgggttggagcagaaccagagtttggtgttggtccctgatattgtggctggtactgcaacagttgaagccataggcatgatgcaggttgtgcaacaagatgcggtagtttcaaagaaaagggataggagtcatggttgcaatccctctccaaagaagttcaagaccattttggacg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

285

Amino Acids

31.86

Weight (kDa)

5.72

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 754
AccB7I CCANNNNNTGG 1 cut(s) 703
AciI CCGC 2 cut(s) 254, 782
AclWI GGATC 2 cut(s) 301, 419
AcsI RAATTY 4 cut(s) 28, 326, 334, 389
AcyI GRCGYC 1 cut(s) 598
AfaI GTAC 1 cut(s) 733
AfiI CCNNNNNNNGG 2 cut(s) 55, 703
AgsI TTSAA 8 cut(s) 161, 233, 274, 394, 482, 746, 792, 841
AhlI ACTAGT 1 cut(s) 538
AjuI GAANNNNNNNTTGG 4 cut(s) 449, 481, 686, 718
AloI GAACNNNNNNTCC 2 cut(s) 137, 169
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw21I GWGCWC 1 cut(s) 220
AlwI GGATC 2 cut(s) 301, 419
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 256, 490
ApoI RAATTY 4 cut(s) 28, 326, 334, 389
Asp700I GAANNNNTTC 3 cut(s) 149, 165, 389
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 4 cut(s) 95, 204, 634, 712
AsuC2I CCSGG 1 cut(s) 638
AsuHPI GGTGA 1 cut(s) 665
AsuNHI GCTAGC 1 cut(s) 644
AvaII GGWCC 4 cut(s) 95, 204, 634, 712
BanII GRGCYC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 2 cut(s) 243, 502
BccI CCATC 2 cut(s) 236, 619
BcnI CCSGG 1 cut(s) 638
BcuI ACTAGT 1 cut(s) 538
BfaI CTAG 2 cut(s) 539, 645
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 754
BglII AGATCT 1 cut(s) 73
BisI GCNGC 3 cut(s) 254, 257, 491
BlsI GCNGC 3 cut(s) 255, 258, 492
Bme1390I CCNGG 1 cut(s) 638
Bme18I GGWCC 4 cut(s) 95, 204, 634, 712
BmgT120I GGNCC 4 cut(s) 95, 204, 634, 712
BmiI GGNNCC 3 cut(s) 570, 636, 714
BmrFI CCNGG 1 cut(s) 638
BmsI GCATC 7 cut(s) 4, 286, 512, 517, 631, 750, 769
BmtI GCTAGC 1 cut(s) 648
BpmI CTGGAG 2 cut(s) 156, 204
Bpu10I CCTNAGC 1 cut(s) 593
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 1 cut(s) 638
BsaBI GATNNNNATC 1 cut(s) 410
BsaHI GRCGYC 1 cut(s) 598
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 799, 829
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 703
Bse1I ACTGG 2 cut(s) 221, 631
Bse3DI GCAATG 2 cut(s) 655, 678
Bse8I GATNNNNATC 1 cut(s) 410
BseGI GGATG 2 cut(s) 475, 646
BseJI GATNNNNATC 1 cut(s) 410
BseLI CCNNNNNNNGG 2 cut(s) 55, 703
BseMI GCAATG 2 cut(s) 655, 678
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 221, 631
BseRI GAGGAG 1 cut(s) 581
BseXI GCAGC 2 cut(s) 243, 502
BseYI CCCAGC 1 cut(s) 551
BsgI GTGCAG 1 cut(s) 509
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 638
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 2 cut(s) 55, 703
BsmFI GGGAC 1 cut(s) 698
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 5 cut(s) 73, 172, 211, 306, 411
BspACI CCGC 2 cut(s) 254, 782
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 83
BspLI GGNNCC 3 cut(s) 570, 636, 714
BspMI ACCTGC 1 cut(s) 754
BspOI GCTAGC 1 cut(s) 648
BspPI GGATC 2 cut(s) 301, 419
BsrDI GCAATG 2 cut(s) 655, 678
BsrI ACTGG 2 cut(s) 221, 631
BssMI GATC 5 cut(s) 73, 172, 211, 306, 411
BssNI GRCGYC 1 cut(s) 598
Bst4CI ACNGT 2 cut(s) 441, 742
BstACI GRCGYC 1 cut(s) 598
BstAPI GCANNNNNTGC 1 cut(s) 769
BstC8I GCNNGC 2 cut(s) 549, 646
BstDEI CTNAG 3 cut(s) 70, 370, 593
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 2 cut(s) 475, 646
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 5 cut(s) 76, 175, 214, 309, 414
BstMBI GATC 5 cut(s) 73, 172, 211, 306, 411
BstMWI GCNNNNNNNGC 2 cut(s) 734, 769
BstNSI RCATGY 1 cut(s) 551
BstSCI CCNGG 1 cut(s) 636
BstV1I GCAGC 2 cut(s) 243, 502
BstX2I RGATCY 2 cut(s) 73, 411
BstYI RGATCY 2 cut(s) 73, 411
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 475, 646
BtsIMutI CAGTG 1 cut(s) 309
BveI ACCTGC 1 cut(s) 754
Cac8I GCNNGC 2 cut(s) 549, 646
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 4 cut(s) 95, 204, 634, 712
CseI GACGC 2 cut(s) 587, 598
Csp6I GTAC 1 cut(s) 732
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 6 cut(s) 425, 548, 561, 680, 757, 812
CviJI RGCY 8 cut(s) 5, 134, 218, 253, 266, 571, 728, 749
CviKI_1 RGCY 8 cut(s) 5, 134, 218, 253, 266, 571, 728, 749
CviQI GTAC 1 cut(s) 732
DdeI CTNAG 3 cut(s) 70, 370, 593
DpnI GATC 5 cut(s) 75, 174, 213, 308, 413
DpnII GATC 5 cut(s) 73, 172, 211, 306, 411
Ecl136II GAGCTC 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 220
Eco32I GATATC 1 cut(s) 430
Eco47I GGWCC 4 cut(s) 95, 204, 634, 712
Eco53kI GAGCTC 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 218
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 389
EcoRV GATATC 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 6 cut(s) 428, 551, 564, 683, 760, 815
FaqI GGGAC 1 cut(s) 698
FatI CATG 6 cut(s) 424, 547, 560, 679, 756, 811
Fnu4HI GCNGC 3 cut(s) 254, 257, 491
FokI GGATG 2 cut(s) 482, 653
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 3 cut(s) 254, 257, 491
FspBI CTAG 2 cut(s) 539, 645
GlaI GCGC 1 cut(s) 67
GluI GCNGC 3 cut(s) 254, 257, 491
GsaI CCCAGC 1 cut(s) 555
GsuI CTGGAG 2 cut(s) 156, 204
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 638
HgaI GACGC 2 cut(s) 587, 598
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 598
Hin1II CATG 6 cut(s) 428, 551, 564, 683, 760, 815
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 4 cut(s) 161, 406, 556, 808
HpaII CCGG 1 cut(s) 638
HphI GGTGA 1 cut(s) 665
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 5 cut(s) 73, 99, 411, 513, 634
Hpy188III TCNNGA 5 cut(s) 125, 170, 394, 586, 841
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 4 cut(s) 94, 189, 379, 391
HpyCH4III ACNGT 2 cut(s) 441, 742
HpyCH4V TGCA 5 cut(s) 490, 737, 763, 772, 819
HpyF10VI GCNNNNNNNGC 2 cut(s) 734, 769
HpyF3I CTNAG 3 cut(s) 70, 370, 593
Hsp92I GRCGYC 1 cut(s) 598
Hsp92II CATG 6 cut(s) 428, 551, 564, 683, 760, 815
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 5 cut(s) 73, 172, 211, 306, 411
LmnI GCTCC 3 cut(s) 223, 568, 688
Lsp1109I GCAGC 2 cut(s) 243, 502
LweI GCATC 7 cut(s) 4, 286, 512, 517, 631, 750, 769
MaeI CTAG 2 cut(s) 539, 645
MaeIII GTNAC 2 cut(s) 176, 541
MalI GATC 5 cut(s) 75, 174, 213, 308, 413
MboI GATC 5 cut(s) 73, 172, 211, 306, 411
MboII GAAGA 4 cut(s) 245, 272, 335, 406
MflI RGATCY 2 cut(s) 73, 411
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 7 cut(s) 28, 84, 269, 326, 334, 389, 494
MlyI GAGTC 1 cut(s) 817
MmeI TCCRAC 1 cut(s) 666
MnlI CCTC 8 cut(s) 16, 49, 59, 79, 185, 321, 559, 835
MroXI GAANNNNTTC 3 cut(s) 149, 165, 389
MslI CAYNNNNRTG 2 cut(s) 282, 755
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 1 cut(s) 638
MspR9I CCNGG 1 cut(s) 638
MwoI GCNNNNNNNGC 2 cut(s) 734, 769
NciI CCSGG 1 cut(s) 638
NdeII GATC 5 cut(s) 73, 172, 211, 306, 411
NheI GCTAGC 1 cut(s) 644
NlaIII CATG 6 cut(s) 428, 551, 564, 683, 760, 815
NlaIV GGNNCC 3 cut(s) 570, 636, 714
NmuCI GTSAC 1 cut(s) 541
NspI RCATGY 1 cut(s) 551
PaeI GCATGC 1 cut(s) 551
PdmI GAANNNNTTC 3 cut(s) 149, 165, 389
PfeI GAWTC 3 cut(s) 161, 406, 556
PflMI CCANNNNNTGG 1 cut(s) 703
PkrI GCNGC 3 cut(s) 255, 258, 492
PleI GAGTC 1 cut(s) 816
PpsI GAGTC 1 cut(s) 816
Psp124BI GAGCTC 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 551
PspN4I GGNNCC 3 cut(s) 570, 636, 714
PspPI GGNCC 4 cut(s) 95, 204, 634, 712
PsuI RGATCY 2 cut(s) 73, 411
RsaI GTAC 1 cut(s) 733
RsaNI GTAC 1 cut(s) 732
RseI CAYNNNNRTG 2 cut(s) 282, 755
SacI GAGCTC 1 cut(s) 220
SatI GCNGC 3 cut(s) 254, 257, 491
Sau3AI GATC 5 cut(s) 73, 172, 211, 306, 411
Sau96I GGNCC 4 cut(s) 95, 204, 634, 712
SchI GAGTC 1 cut(s) 817
ScrFI CCNGG 1 cut(s) 638
SduI GDGCHC 1 cut(s) 220
SetI ASST 4 cut(s) 105, 150, 220, 768
SfaNI GCATC 7 cut(s) 4, 286, 512, 517, 631, 750, 769
SinI GGWCC 4 cut(s) 95, 204, 634, 712
SmiMI CAYNNNNRTG 2 cut(s) 282, 755
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
SpeI ACTAGT 1 cut(s) 538
SphI GCATGC 1 cut(s) 551
Sse9I AATT 7 cut(s) 28, 84, 269, 326, 334, 389, 494
SsiI CCGC 2 cut(s) 254, 782
SspI AATATT 1 cut(s) 661
SspMI CTAG 2 cut(s) 539, 645
SstI GAGCTC 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 636
TaaI ACNGT 2 cut(s) 441, 742
TaqI TCGA 3 cut(s) 51, 190, 214
TasI AATT 7 cut(s) 28, 84, 269, 326, 334, 389, 494
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 3 cut(s) 161, 406, 556
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 2 cut(s) 256, 490
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 1 cut(s) 336
TspRI CASTG 1 cut(s) 309
Van91I CCANNNNNTGG 1 cut(s) 703
VpaK11BI GGWCC 4 cut(s) 95, 204, 634, 712
XagI CCTNNNNNAGG 1 cut(s) 53
XapI RAATTY 4 cut(s) 28, 326, 334, 389
XceI RCATGY 1 cut(s) 551
XmnI GAANNNNTTC 3 cut(s) 149, 165, 389
XspI CTAG 2 cut(s) 539, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.