RchiOBHm_Chr1g0320861

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000169
Physical Location & Seq
Forward (+)
8387890 .. 8389191
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55096

Sequence Viewer

Length: 1302 bp
ATGGCTTCCATAGACGCAGTGACTGCTAGCTTTGCCGCTTCTCTGGCACTTGCTGATGGAGGAAAAGCTCCAGATCTGGGACGAATTGGAGGAGGGTCTGTTCGCAGGTCTTCTCACTCTTTTCTTCTTGGAAAGCCGCTCACCCGGAAACCAGTTGATCCCTCCGCCTTCAAGGCTCACTTTCTCCGGACGTGGCTGGTGGACAAGGAGTTTAGGGTTCAGGAACGCGCGGACAACCACTTCTTATTCTCTTTTGGATCTGTTCGGGATCGGAACAAGGTTCTGAAGGGTGGTGTGTGGTGTTATGATCATGCTCCGGTCTGTCTGGAGGAATATGATGGCGTTCTGTCCATTGGGGACGTGCCTATGAAACATATCAGAATCTGGGTTAGGGTTTCGGGTATCCCTCCCCTCTATGAGGAGCCAGACAACCTCATCCTCGTCGGAAATCTGCTAGGAGGCTATCTGGACTATGACAAGAAGGAATTTCGCAAAGGTATCGTCCGAATCCTTTTTTCTCATGATATCTCTAAACCTGTTCTCTTGGAGCGTCGGGTTTTCTTGGCCACAGGTGTTGAACCTACACTGAAATTCCAGTTCGAACATCTTAAGGGTCGTTGCTCACAGTGTGGATTGATTACACACTCTGGTGAAAAGTGTGAGGAACCCAATGCCGTGGTTTCTACCCCTAGGGTTTTGCGATTTGGTGGAGGTCCCCCTATCTCCGGTGAAGGCTTCTCCTTTTCGGCCCAGAGTAACATTGATTTACCTTTGCCTTCCCCTACTATACTGAAGAAGAAGAAGCCGGTCATTCGGCGACAGGAGCGATCACTTTCTGGTCCTGCTCCTAAGGCGGCTACCGTGCCCAACACGGCAGAGTTGGAAGGCATGCTCTGTGACTCTGTGTTGCAGGACCAAACTGTCGGGGGGACTTCCGGCCATTCTTCTGATCCTAGTTCTGAGGACTTGATTGGCTCCCCTCCGCAAGCTGTGGTTAAGCCAACTTTGACCTACAAGAAGAGAGTCCGGGAGGAGATACATGTACCCTCGCCGAAGAAGTTCAAGACTATTCTTGGTGGCAAGTTTCTTACACTACAGGCTGATGCCCTTGGCCTAGTTGAAGTAGAGGATGACGTTACTCTTGTTAAACTTAAGAAGAAGCTGGGTCGACCCCTTGGAAGTAAGAATAAAGGCCCTAGGTCTCAAAAGAAGGCTGGGATAAATCCTTTACGACTCACCTATCCTTCTGCTAAGCCCGTTCCAGAAACTGGCCCTTCGGCTAAGGGCAAGGGAAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

433

Amino Acids

47.09

Weight (kDa)

9.64

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 40 - 112 4.7e-08 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 175 - 221 2.6e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 920
Acc36I ACCTGC 1 cut(s) 96
AccB7I CCANNNNNTGG 1 cut(s) 1268
AccBSI CCGCTC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 1168
AccII CGCG 2 cut(s) 228, 230
AccIII TCCGGA 1 cut(s) 186
AciI CCGC 6 cut(s) 36, 137, 165, 230, 854, 983
AclWI GGATC 4 cut(s) 152, 265, 276, 944
AcoI YGGCCR 2 cut(s) 564, 937
AcsI RAATTY 2 cut(s) 485, 590
AcuI CTGAAG 2 cut(s) 305, 812
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 1 cut(s) 1044
AfiI CCNNNNNNNGG 4 cut(s) 77, 418, 725, 1268
AflII CTTAAG 2 cut(s) 608, 1151
AflIII ACRYGT 1 cut(s) 1039
AgsI TTSAA 4 cut(s) 172, 578, 1063, 1121
AjiI CACGTC 2 cut(s) 192, 361
AleI CACNNNNGTG 1 cut(s) 648
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 4 cut(s) 30, 68, 989, 1162
AluI AGCT 4 cut(s) 30, 68, 989, 1162
Alw26I GTCTC 1 cut(s) 1206
AlwI GGATC 4 cut(s) 152, 265, 276, 944
AlwNI CAGNNNCTG 3 cut(s) 23, 384, 1268
Aor13HI TCCGGA 1 cut(s) 186
AoxI GGCC 6 cut(s) 564, 747, 937, 1111, 1192, 1270
ApoI RAATTY 2 cut(s) 485, 590
ArsI GACNNNNNNTTYG 2 cut(s) 486, 518
Asp700I GAANNNNTTC 1 cut(s) 1058
AspA2I CCTAGG 2 cut(s) 689, 1196
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 6 cut(s) 713, 748, 839, 913, 1193, 1271
AsuC2I CCSGG 2 cut(s) 145, 1028
AsuHPI GGTGA 4 cut(s) 133, 662, 740, 1228
AsuII TTCGAA 1 cut(s) 600
AsuNHI GCTAGC 1 cut(s) 26
AvaII GGWCC 3 cut(s) 713, 839, 913
AvrII CCTAGG 2 cut(s) 689, 1196
AxyI CCTNAGG 1 cut(s) 849
BaeGI GKGCMC 1 cut(s) 867
BalI TGGCCA 1 cut(s) 566
BbsI GAAGAC 1 cut(s) 102
BccI CCATC 2 cut(s) 50, 332
BceAI ACGGC 2 cut(s) 659, 888
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciVI GTATCC 1 cut(s) 413
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 2 cut(s) 145, 1028
BcoDI GTCTC 1 cut(s) 1206
BfaI CTAG 7 cut(s) 27, 455, 690, 954, 1115, 1197, 1300
BfmI CTRYAG 1 cut(s) 1094
BfrI CTTAAG 2 cut(s) 608, 1151
BfuAI ACCTGC 1 cut(s) 96
BfuI GTATCC 1 cut(s) 413
BglI GCCNNNNNGGC 1 cut(s) 173
BglII AGATCT 1 cut(s) 73
BisI GCNGC 3 cut(s) 36, 137, 855
BlnI CCTAGG 2 cut(s) 689, 1196
BlpI GCTNAGC 1 cut(s) 1251
BlsI GCNGC 3 cut(s) 37, 138, 856
Bme1390I CCNGG 2 cut(s) 145, 1028
Bme18I GGWCC 3 cut(s) 713, 839, 913
BmgBI CACGTC 2 cut(s) 192, 361
BmgT120I GGNCC 6 cut(s) 713, 748, 839, 913, 1193, 1271
BmiI GGNNCC 4 cut(s) 423, 666, 715, 976
BmrFI CCNGG 2 cut(s) 145, 1028
BmsI GCATC 1 cut(s) 1093
BmtI GCTAGC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 102
BpmI CTGGAG 2 cut(s) 54, 347
Bpu10I CCTNAGC 1 cut(s) 1281
Bpu1102I GCTNAGC 1 cut(s) 1251
Bpu14I TTCGAA 1 cut(s) 600
BpuMI CCSGG 2 cut(s) 145, 1028
BsaI GGTCTC 1 cut(s) 1206
BsaJI CCNNGG 5 cut(s) 675, 689, 1108, 1174, 1196
BsaWI WCCGGW 3 cut(s) 186, 316, 725
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 418, 725, 1268
Bse118I RCCGGY 1 cut(s) 805
Bse1I ACTGG 3 cut(s) 152, 595, 1273
Bse21I CCTNAGG 1 cut(s) 849
BseAI TCCGGA 1 cut(s) 186
BseDI CCNNGG 5 cut(s) 675, 689, 1108, 1174, 1196
BseGI GGATG 2 cut(s) 435, 1135
BseLI CCNNNNNNNGG 4 cut(s) 77, 418, 725, 1268
BseMII CTCAG 1 cut(s) 951
BseNI ACTGG 3 cut(s) 152, 595, 1273
BseRI GAGGAG 3 cut(s) 105, 434, 1046
BseSI GKGCMC 1 cut(s) 867
BseYI CCCAGC 2 cut(s) 1162, 1214
Bsh1236I CGCG 2 cut(s) 228, 230
BshFI GGCC 6 cut(s) 566, 749, 939, 1113, 1194, 1272
BsiSI CCGG 7 cut(s) 145, 187, 317, 726, 806, 936, 1027
BslFI GGGAC 4 cut(s) 93, 371, 699, 943
BslI CCNNNNNNNGG 4 cut(s) 77, 418, 725, 1268
BsmAI GTCTC 1 cut(s) 1206
BsmFI GGGAC 4 cut(s) 93, 371, 699, 943
BsnI GGCC 6 cut(s) 566, 749, 939, 1113, 1194, 1272
Bso31I GGTCTC 1 cut(s) 1206
Bsp119I TTCGAA 1 cut(s) 600
Bsp1286I GDGCHC 1 cut(s) 867
Bsp13I TCCGGA 1 cut(s) 186
Bsp143I GATC 7 cut(s) 73, 157, 257, 268, 307, 827, 949
Bsp1720I GCTNAGC 1 cut(s) 1251
BspACI CCGC 6 cut(s) 36, 137, 165, 230, 854, 983
BspANI GGCC 6 cut(s) 566, 749, 939, 1113, 1194, 1272
BspCNI CTCAG 1 cut(s) 952
BspEI TCCGGA 1 cut(s) 186
BspFNI CGCG 2 cut(s) 228, 230
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 4 cut(s) 423, 666, 715, 976
BspMI ACCTGC 1 cut(s) 96
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 4 cut(s) 152, 265, 276, 944
BspT104I TTCGAA 1 cut(s) 600
BspTI CTTAAG 2 cut(s) 608, 1151
BspTNI GGTCTC 1 cut(s) 1206
BsrBI CCGCTC 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 805
BsrI ACTGG 3 cut(s) 152, 595, 1273
BssAI RCCGGY 1 cut(s) 805
BssECI CCNNGG 5 cut(s) 675, 689, 1108, 1174, 1196
BssMI GATC 7 cut(s) 73, 157, 257, 268, 307, 827, 949
BssT1I CCWWGG 4 cut(s) 689, 1108, 1174, 1196
Bst4CI ACNGT 3 cut(s) 627, 862, 922
Bst6I CTCTTC 1 cut(s) 1013
BstAFI CTTAAG 2 cut(s) 608, 1151
BstAPI GCANNNNNTGC 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 600
BstC8I GCNNGC 3 cut(s) 28, 890, 987
BstDEI CTNAG 4 cut(s) 849, 960, 1251, 1281
BstDSI CCRYGG 1 cut(s) 675
BstENI CCTNNNNNAGG 1 cut(s) 416
BstF5I GGATG 2 cut(s) 435, 1135
BstFNI CGCG 2 cut(s) 228, 230
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 7 cut(s) 76, 160, 260, 271, 310, 830, 952
BstMAI GTCTC 1 cut(s) 1206
BstMBI GATC 7 cut(s) 73, 157, 257, 268, 307, 827, 949
BstMWI GCNNNNNNNGC 6 cut(s) 23, 32, 44, 173, 823, 851
BstNSI RCATGY 2 cut(s) 892, 1043
BstSCI CCNGG 2 cut(s) 143, 1026
BstSFI CTRYAG 1 cut(s) 1094
BstSLI GKGCMC 1 cut(s) 867
BstUI CGCG 2 cut(s) 228, 230
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 2 cut(s) 73, 257
BstXI CCANNNNNNTGG 1 cut(s) 676
BstYI RGATCY 2 cut(s) 73, 257
Bsu36I CCTNAGG 1 cut(s) 849
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 6 cut(s) 566, 749, 939, 1113, 1194, 1272
BtgI CCRYGG 1 cut(s) 675
BtrI CACGTC 2 cut(s) 192, 361
BtsCI GGATG 2 cut(s) 435, 1135
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 3 cut(s) 24, 584, 632
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 3 cut(s) 28, 890, 987
CaiI CAGNNNCTG 3 cut(s) 23, 384, 1268
CciI TCATGA 1 cut(s) 520
CfoI GCGC 1 cut(s) 230
Cfr10I RCCGGY 1 cut(s) 805
Cfr13I GGNCC 6 cut(s) 713, 748, 839, 913, 1193, 1271
CseI GACGC 2 cut(s) 23, 539
Csp6I GTAC 1 cut(s) 1043
CspCI CAANNNNNGTGG 2 cut(s) 556, 591
CviAII CATG 4 cut(s) 311, 521, 889, 1040
CviQI GTAC 1 cut(s) 1043
DdeI CTNAG 4 cut(s) 849, 960, 1251, 1281
DpnI GATC 7 cut(s) 75, 159, 259, 270, 309, 829, 951
DpnII GATC 7 cut(s) 73, 157, 257, 268, 307, 827, 949
DraIII CACNNNGTG 1 cut(s) 629
DrdI GACNNNNNNGTC 1 cut(s) 920
DseDI GACNNNNNNGTC 1 cut(s) 920
EaeI YGGCCR 2 cut(s) 564, 937
Eam1104I CTCTTC 1 cut(s) 1013
EarI CTCTTC 1 cut(s) 1013
EciI GGCGGA 1 cut(s) 154
Eco130I CCWWGG 4 cut(s) 689, 1108, 1174, 1196
Eco31I GGTCTC 1 cut(s) 1206
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 3 cut(s) 713, 839, 913
Eco57I CTGAAG 2 cut(s) 305, 812
Eco81I CCTNAGG 1 cut(s) 849
EcoNI CCTNNNNNAGG 1 cut(s) 416
EcoO109I RGGNCCY 2 cut(s) 713, 1193
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 4 cut(s) 689, 1108, 1174, 1196
ErhI CCWWGG 4 cut(s) 689, 1108, 1174, 1196
FaeI CATG 4 cut(s) 314, 524, 892, 1043
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 4 cut(s) 93, 371, 699, 943
FatI CATG 4 cut(s) 310, 520, 888, 1039
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 1 cut(s) 1168
Fnu4HI GCNGC 3 cut(s) 36, 137, 855
FokI GGATG 2 cut(s) 422, 1142
Fsp4HI GCNGC 3 cut(s) 36, 137, 855
FspBI CTAG 7 cut(s) 27, 455, 690, 954, 1115, 1197, 1300
GlaI GCGC 1 cut(s) 229
GluI GCNGC 3 cut(s) 36, 137, 855
GsaI CCCAGC 2 cut(s) 1166, 1218
GsuI CTGGAG 2 cut(s) 54, 347
HaeIII GGCC 6 cut(s) 566, 749, 939, 1113, 1194, 1272
HapII CCGG 7 cut(s) 145, 187, 317, 726, 806, 936, 1027
HgaI GACGC 2 cut(s) 23, 539
HhaI GCGC 1 cut(s) 230
Hin1II CATG 4 cut(s) 314, 524, 892, 1043
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HincII GTYRAC 1 cut(s) 1169
HindII GTYRAC 1 cut(s) 1169
HinfI GANTC 5 cut(s) 381, 507, 899, 1023, 1233
HpaII CCGG 7 cut(s) 145, 187, 317, 726, 806, 936, 1027
HphI GGTGA 4 cut(s) 133, 662, 740, 1228
Hpy166II GTNNAC 2 cut(s) 202, 1169
Hpy188I TCNGA 7 cut(s) 273, 285, 380, 446, 506, 949, 961
Hpy188III TCNNGA 9 cut(s) 71, 187, 221, 266, 326, 467, 521, 1063, 1262
Hpy8I GTNNAC 2 cut(s) 202, 1169
Hpy99I CGWCG 2 cut(s) 446, 555
HpyAV CCTTC 9 cut(s) 178, 280, 475, 725, 786, 878, 1204, 1254, 1284
HpyCH4III ACNGT 3 cut(s) 627, 862, 922
HpyCH4IV ACGT 3 cut(s) 191, 360, 1134
HpyCH4V TGCA 1 cut(s) 910
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 32, 44, 173, 823, 851
HpyF3I CTNAG 4 cut(s) 849, 960, 1251, 1281
HpySE526I ACGT 3 cut(s) 191, 360, 1134
Hsp92II CATG 4 cut(s) 314, 524, 892, 1043
HspAI GCGC 1 cut(s) 228
Kpn2I TCCGGA 1 cut(s) 186
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 7 cut(s) 73, 157, 257, 268, 307, 827, 949
LmnI GCTCC 7 cut(s) 73, 319, 421, 547, 823, 850, 980
LweI GCATC 1 cut(s) 1093
MaeI CTAG 7 cut(s) 27, 455, 690, 954, 1115, 1197, 1300
MaeII ACGT 3 cut(s) 191, 360, 1134
MaeIII GTNAC 4 cut(s) 19, 755, 896, 1135
MalI GATC 7 cut(s) 75, 159, 259, 270, 309, 829, 951
MbiI CCGCTC 1 cut(s) 139
MboI GATC 7 cut(s) 73, 157, 257, 268, 307, 827, 949
MboII GAAGA 9 cut(s) 102, 116, 805, 808, 811, 936, 1030, 1066, 1168
MflI RGATCY 2 cut(s) 73, 257
MhlI GDGCHC 1 cut(s) 867
MlsI TGGCCA 1 cut(s) 566
MluCI AATT 3 cut(s) 84, 485, 590
MluNI TGGCCA 1 cut(s) 566
MlyI GAGTC 3 cut(s) 893, 1032, 1227
MmeI TCCRAC 2 cut(s) 424, 861
Mox20I TGGCCA 1 cut(s) 566
MroI TCCGGA 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 1058
MscI TGGCCA 1 cut(s) 566
MseI TTAA 4 cut(s) 609, 996, 1146, 1152
MslI CAYNNNNRTG 1 cut(s) 648
Msp20I TGGCCA 1 cut(s) 566
MspCI CTTAAG 2 cut(s) 608, 1151
MspI CCGG 7 cut(s) 145, 187, 317, 726, 806, 936, 1027
MspR9I CCNGG 2 cut(s) 145, 1028
MvnI CGCG 2 cut(s) 228, 230
MwoI GCNNNNNNNGC 6 cut(s) 23, 32, 44, 173, 823, 851
NciI CCSGG 2 cut(s) 145, 1028
NdeII GATC 7 cut(s) 73, 157, 257, 268, 307, 827, 949
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 4 cut(s) 314, 524, 892, 1043
NlaIV GGNNCC 4 cut(s) 423, 666, 715, 976
NmuCI GTSAC 2 cut(s) 19, 896
NspI RCATGY 2 cut(s) 892, 1043
NspV TTCGAA 1 cut(s) 600
OliI CACNNNNGTG 1 cut(s) 648
PaeI GCATGC 1 cut(s) 892
PagI TCATGA 1 cut(s) 520
PciI ACATGT 1 cut(s) 1039
PdmI GAANNNNTTC 1 cut(s) 1058
PfeI GAWTC 2 cut(s) 381, 507
PflMI CCANNNNNTGG 1 cut(s) 1268
PfoI TCCNGGA 1 cut(s) 1026
PkrI GCNGC 3 cut(s) 37, 138, 856
PleI GAGTC 3 cut(s) 893, 1031, 1227
PpsI GAGTC 3 cut(s) 893, 1031, 1227
PpuMI RGGWCCY 1 cut(s) 713
PscI ACATGT 1 cut(s) 1039
Psp5II RGGWCCY 1 cut(s) 713
PspFI CCCAGC 2 cut(s) 1162, 1214
PspN4I GGNNCC 4 cut(s) 423, 666, 715, 976
PspPI GGNCC 6 cut(s) 713, 748, 839, 913, 1193, 1271
PspPPI RGGWCCY 1 cut(s) 713
PstNI CAGNNNCTG 3 cut(s) 23, 384, 1268
PsuI RGATCY 2 cut(s) 73, 257
RsaI GTAC 1 cut(s) 1044
RsaNI GTAC 1 cut(s) 1043
RseI CAYNNNNRTG 1 cut(s) 648
SalI GTCGAC 1 cut(s) 1167
SaqAI TTAA 4 cut(s) 609, 996, 1146, 1152
SatI GCNGC 3 cut(s) 36, 137, 855
Sau3AI GATC 7 cut(s) 73, 157, 257, 268, 307, 827, 949
Sau96I GGNCC 6 cut(s) 713, 748, 839, 913, 1193, 1271
SchI GAGTC 3 cut(s) 893, 1032, 1227
ScrFI CCNGG 2 cut(s) 145, 1028
SduI GDGCHC 1 cut(s) 867
SfaNI GCATC 1 cut(s) 1093
SfcI CTRYAG 1 cut(s) 1094
SfuI TTCGAA 1 cut(s) 600
SinI GGWCC 3 cut(s) 713, 839, 913
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 2 cut(s) 608, 1151
SmoI CTYRAG 2 cut(s) 608, 1151
SphI GCATGC 1 cut(s) 892
Sse9I AATT 3 cut(s) 84, 485, 590
SsiI CCGC 6 cut(s) 36, 137, 165, 230, 854, 983
SspMI CTAG 7 cut(s) 27, 455, 690, 954, 1115, 1197, 1300
StyD4I CCNGG 2 cut(s) 143, 1026
StyI CCWWGG 4 cut(s) 689, 1108, 1174, 1196
TaaI ACNGT 3 cut(s) 627, 862, 922
TaiI ACGT 3 cut(s) 194, 363, 1137
TaqI TCGA 2 cut(s) 600, 1168
TasI AATT 3 cut(s) 84, 485, 590
TauI GCSGC 3 cut(s) 38, 139, 857
TfiI GAWTC 2 cut(s) 381, 507
Tru1I TTAA 4 cut(s) 609, 996, 1146, 1152
Tru9I TTAA 4 cut(s) 609, 996, 1146, 1152
TscAI CASTG 3 cut(s) 24, 591, 632
TseFI GTSAC 2 cut(s) 19, 896
Tsp45I GTSAC 2 cut(s) 19, 896
TspDTI ATGAA 1 cut(s) 383
TspRI CASTG 3 cut(s) 24, 591, 632
Van91I CCANNNNNTGG 1 cut(s) 1268
Vha464I CTTAAG 2 cut(s) 608, 1151
VpaK11BI GGWCC 3 cut(s) 713, 839, 913
XagI CCTNNNNNAGG 1 cut(s) 416
XapI RAATTY 2 cut(s) 485, 590
XceI RCATGY 2 cut(s) 892, 1043
XmaJI CCTAGG 2 cut(s) 689, 1196
XmiI GTMKAC 1 cut(s) 1168
XmnI GAANNNNTTC 1 cut(s) 1058
XspI CTAG 7 cut(s) 27, 455, 690, 954, 1115, 1197, 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.