Rmu_sc0001371.1_g000008

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001371.1
OG0000169
Physical Location & Seq
Reverse (-)
53729 .. 54337
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001371.1_g000008.1.cds

Sequence Viewer

Length: 609 bp
atggctttcattgatgttgttacagtgagttttgctgcctctcttgcctttgcagagggcgacaatgcccctgatctgggaaagcttggtgatggccctgtgcgcaggtcctcccaatcctttcttcttggcaaaccattgacccaaaagcaaattgatccaaaggcgttcaaaacccatttccacctgacctggatggtggacaaggaattcaagatcttggatagggcgtgggatatgttcttattctccttcgaatctgttcaagatcgtaacatagtactccgaggaggggtttggtgctttgatagatcccccatgtgttttgcagagtatgttggagtcaaatctttgcacgaagtccagttcaagcatctccaaatatgggttagggtttctggaatcccacccgtgtatgaagagcctgagaatctcaccctaattaggaacctcttgggaggtttcttggattatgataagaaagagttcaagaaaggtttgattatgattttttcactcatgatatttctaaaccaatcttgcttgaatgtaaagtttttctggatgttagtgttgaacctattcttcagtttcagttcgaacatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

202

Amino Acids

23.31

Weight (kDa)

7.72

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 104
Acc36I ACCTGC 1 cut(s) 96
AclWI GGATC 2 cut(s) 152, 306
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 571
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 5 cut(s) 76, 77, 292, 385, 444
AgsI TTSAA 7 cut(s) 172, 214, 266, 370, 490, 547, 577
AjnI CCWGG 1 cut(s) 191
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
AlwI GGATC 2 cut(s) 152, 306
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 209
Asp700I GAANNNNTTC 3 cut(s) 261, 485, 581
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 95, 108
AsuHPI GGTGA 2 cut(s) 101, 427
AsuII TTCGAA 2 cut(s) 255, 599
AvaII GGWCC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 22
BccI CCATC 2 cut(s) 86, 190
BciT130I CCWGG 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 96
BglII AGATCT 1 cut(s) 216
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmcAI AGTACT 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 2 cut(s) 95, 108
BmiI GGNNCC 1 cut(s) 449
BmrFI CCNGG 1 cut(s) 193
BmsI GCATC 1 cut(s) 382
Bpu14I TTCGAA 2 cut(s) 255, 599
BsaJI CCNNGG 1 cut(s) 286
Bsc4I CCNNNNNNNGG 5 cut(s) 76, 77, 292, 385, 444
Bse1I ACTGG 1 cut(s) 364
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 2 cut(s) 201, 570
BseLI CCNNNNNNNGG 5 cut(s) 76, 77, 292, 385, 444
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 1 cut(s) 22
BshFI GGCC 1 cut(s) 96
BslI CCNNNNNNNGG 5 cut(s) 76, 77, 292, 385, 444
BsnI GGCC 1 cut(s) 96
Bsp119I TTCGAA 2 cut(s) 255, 599
Bsp143I GATC 5 cut(s) 73, 157, 216, 268, 311
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 418
BspHI TCATGA 1 cut(s) 519
BspLI GGNNCC 1 cut(s) 449
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 2 cut(s) 152, 306
BspQI GCTCTTC 1 cut(s) 414
BspT104I TTCGAA 2 cut(s) 255, 599
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 5 cut(s) 73, 157, 216, 268, 311
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 1 cut(s) 414
BstBI TTCGAA 2 cut(s) 255, 599
BstDEI CTNAG 1 cut(s) 426
BstF5I GGATG 2 cut(s) 201, 570
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 5 cut(s) 76, 160, 219, 271, 314
BstMBI GATC 5 cut(s) 73, 157, 216, 268, 311
BstMWI GCNNNNNNNGC 2 cut(s) 44, 102
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 2 cut(s) 216, 311
BstYI RGATCY 2 cut(s) 216, 311
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 2 cut(s) 201, 570
BtsIMutI CAGTG 1 cut(s) 30
BveI ACCTGC 1 cut(s) 96
CciI TCATGA 1 cut(s) 519
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 95, 108
Csp6I GTAC 1 cut(s) 281
CviAII CATG 2 cut(s) 319, 520
CviJI RGCY 4 cut(s) 5, 85, 96, 424
CviKI_1 RGCY 4 cut(s) 5, 85, 96, 424
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 1 cut(s) 426
DpnI GATC 5 cut(s) 75, 159, 218, 270, 313
DpnII GATC 5 cut(s) 73, 157, 216, 268, 311
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 571
EcoO109I RGGNCCY 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 191
FaeI CATG 2 cut(s) 322, 523
FaiI YATR 9 cut(s) 239, 278, 320, 336, 385, 417, 474, 506, 521
FatI CATG 2 cut(s) 318, 519
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 208, 577
Fsp4HI GCNGC 1 cut(s) 36
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 96
HhaI GCGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 322, 523
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 4 cut(s) 257, 342, 402, 430
HphI GGTGA 2 cut(s) 101, 427
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 287, 608
Hpy188III TCNNGA 6 cut(s) 214, 266, 399, 490, 520, 562
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 3 cut(s) 53, 329, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 102
HpyF3I CTNAG 1 cut(s) 426
Hsp92II CATG 2 cut(s) 322, 523
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 5 cut(s) 73, 157, 216, 268, 311
LguI GCTCTTC 1 cut(s) 414
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 382
MaeIII GTNAC 2 cut(s) 19, 272
MalI GATC 5 cut(s) 75, 159, 218, 270, 313
MboI GATC 5 cut(s) 73, 157, 216, 268, 311
MboII GAAGA 3 cut(s) 116, 431, 577
MflI RGATCY 2 cut(s) 216, 311
MluCI AATT 3 cut(s) 153, 209, 441
MlyI GAGTC 1 cut(s) 351
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 7 cut(s) 49, 49, 121, 281, 284, 452, 461
MroXI GAANNNNTTC 3 cut(s) 261, 485, 581
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 44, 102
NdeII GATC 5 cut(s) 73, 157, 216, 268, 311
NlaIII CATG 2 cut(s) 322, 523
NlaIV GGNNCC 1 cut(s) 449
NsbI TGCGCA 1 cut(s) 104
NspV TTCGAA 2 cut(s) 255, 599
PagI TCATGA 1 cut(s) 519
PciSI GCTCTTC 1 cut(s) 414
PdmI GAANNNNTTC 3 cut(s) 261, 485, 581
PfeI GAWTC 3 cut(s) 257, 402, 430
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
PpuMI RGGWCCY 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 449
PspPI GGNCC 2 cut(s) 95, 108
PspPPI RGGWCCY 1 cut(s) 108
PsuI RGATCY 2 cut(s) 216, 311
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SapI GCTCTTC 1 cut(s) 414
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 5 cut(s) 73, 157, 216, 268, 311
Sau96I GGNCC 2 cut(s) 95, 108
ScaI AGTACT 1 cut(s) 282
SchI GAGTC 1 cut(s) 351
ScrFI CCNGG 1 cut(s) 193
SetI ASST 8 cut(s) 87, 110, 189, 194, 453, 463, 499, 582
SfaNI GCATC 1 cut(s) 382
SfuI TTCGAA 2 cut(s) 255, 599
SinI GGWCC 1 cut(s) 108
Sse9I AATT 3 cut(s) 153, 209, 441
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 25
TaqI TCGA 2 cut(s) 255, 599
TasI AATT 3 cut(s) 153, 209, 441
TatI WGTACW 1 cut(s) 280
TfiI GAWTC 3 cut(s) 257, 402, 430
TscAI CASTG 1 cut(s) 30
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 432
TspRI CASTG 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 1 cut(s) 209
XmnI GAANNNNTTC 3 cut(s) 261, 485, 581
ZrmI AGTACT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.