Rmu_sc0007991.1_g000008

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007991.1
OG0000169
Physical Location & Seq
Reverse (-)
18870 .. 20717
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007991.1_g000008.1.cds

Sequence Viewer

Length: 972 bp
atggtggacaaggaattcaggatccaggagaggacgggggatctgttcctcttctcttttgaatctgttcgagaccataacaaagtattacggggaggagtttggtgttatgatcgcacccccgtgtgttttgcagaatatgatggagtcaaactattgcatgaagtccaattcaagcatctccgagtttgggctagggtttttggaataccacctctttttgaagagtctgagaatctcacactgattgggaacctccttgggggtttttcggattatgataagaaggagtttaagaaaggctcgaataggattttattctctcatgatgtgtccaagccgatcttgtttgaactcaaagtctatttggatgttggtgtcgaaccgattcttcagtttcaatttgaacatctgaaagggagatgctctcagtgtggacttgtcactcatgccagaattgcttgtgcagaaccgtcgcttgaagaagaagtcaggttaagggattaccctgacgactgcaccccacagtgctggcacgcctgcgcaatcacacgctcaaaagagacagcttgcacaccaactggttttggagccaaacagttattcgtcgattggagcggccaatttcctctacttctccttcggcccatgcaaagggatgttactgtcactgatgcttctttagagcatgagttggagaatgatcaaagtcccaagttagaacctcccatagagacttgtgatttggatggttctacaggtatgcagatggctgatgcattgggattgattgaagatgacagtgatgttgctttgctatctttgaagaagaagactagtaggcctcttggcagcaagaacaagattcagcacactagtaagaagactaagggtagtcttctgaagctcacatatcctccacctactggatctgcttccagccctagagataagggcaaaggaaaaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

323

Amino Acids

36.38

Weight (kDa)

6.33

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 544
AccB7I CCANNNNNTGG 1 cut(s) 926
AccBSI CCGCTC 1 cut(s) 618
AciI CCGC 1 cut(s) 618
AclWI GGATC 4 cut(s) 16, 29, 48, 937
AcoI YGGCCR 1 cut(s) 619
AcsI RAATTY 2 cut(s) 14, 966
AcuI CTGAAG 2 cut(s) 377, 923
AfiI CCNNNNNNNGG 4 cut(s) 190, 262, 654, 926
AgsI TTSAA 9 cut(s) 62, 175, 224, 353, 401, 407, 482, 794, 826
AhlI ACTAGT 2 cut(s) 836, 875
AjnI CCWGG 1 cut(s) 24
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 2 cut(s) 569, 907
AluI AGCT 2 cut(s) 569, 907
Alw26I GTCTC 3 cut(s) 66, 557, 728
AlwI GGATC 4 cut(s) 16, 29, 48, 937
AoxI GGCC 3 cut(s) 619, 644, 842
ApeKI GCWGC 1 cut(s) 852
ApoI RAATTY 2 cut(s) 14, 966
ArsI GACNNNNNNTTYG 2 cut(s) 727, 759
Asp700I GAANNNNTTC 2 cut(s) 66, 387
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 1 cut(s) 645
BamHI GGATCC 1 cut(s) 21
BbsI GAAGAC 3 cut(s) 839, 890, 890
BbvI GCAGC 1 cut(s) 864
BccI CCATC 3 cut(s) 137, 743, 763
BcgI CGANNNNNNTGC 2 cut(s) 456, 490
BciT130I CCWGG 1 cut(s) 26
BclI TGATCA 1 cut(s) 703
BcoDI GTCTC 3 cut(s) 66, 557, 728
BcuI ACTAGT 2 cut(s) 836, 875
BfaI CTAG 4 cut(s) 195, 837, 876, 945
BfmI CTRYAG 1 cut(s) 756
BisI GCNGC 2 cut(s) 619, 853
BlsI GCNGC 2 cut(s) 620, 854
Bme1390I CCNGG 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 645
BmiI GGNNCC 3 cut(s) 23, 254, 592
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 4 cut(s) 187, 413, 664, 766
BpiI GAAGAC 3 cut(s) 839, 890, 890
BplI GAGNNNNNCTC 2 cut(s) 412, 444
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 901, 931
Bsc4I CCNNNNNNNGG 4 cut(s) 190, 262, 654, 926
Bse1I ACTGG 2 cut(s) 586, 931
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 3 cut(s) 376, 664, 754
BseLI CCNNNNNNNGG 4 cut(s) 190, 262, 654, 926
BseMII CTCAG 2 cut(s) 222, 443
BseNI ACTGG 2 cut(s) 586, 931
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 864
BsgI GTGCAG 2 cut(s) 486, 502
BshFI GGCC 3 cut(s) 621, 646, 844
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 4 cut(s) 190, 262, 654, 926
BsmAI GTCTC 3 cut(s) 66, 557, 728
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 3 cut(s) 621, 646, 844
Bso31I GGTCTC 1 cut(s) 66
Bsp143I GATC 6 cut(s) 21, 40, 112, 342, 703, 929
BspACI CCGC 1 cut(s) 618
BspANI GGCC 3 cut(s) 621, 646, 844
BspCNI CTCAG 2 cut(s) 223, 442
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 23, 254, 592
BspPI GGATC 4 cut(s) 16, 29, 48, 937
BspTNI GGTCTC 1 cut(s) 66
BsrBI CCGCTC 1 cut(s) 618
BsrI ACTGG 2 cut(s) 586, 931
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 6 cut(s) 21, 40, 112, 342, 703, 929
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 5 cut(s) 474, 528, 600, 667, 803
Bst6I CTCTTC 2 cut(s) 56, 219
BstC8I GCNNGC 4 cut(s) 533, 537, 541, 571
BstDEI CTNAG 3 cut(s) 231, 429, 888
BstF5I GGATG 3 cut(s) 376, 664, 754
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 6 cut(s) 24, 43, 115, 345, 706, 932
BstMAI GTCTC 3 cut(s) 66, 557, 728
BstMBI GATC 6 cut(s) 21, 40, 112, 342, 703, 929
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 756
BstV1I GCAGC 1 cut(s) 864
BstV2I GAAGAC 3 cut(s) 839, 890, 890
BstX2I RGATCY 3 cut(s) 21, 40, 929
BstXI CCANNNNNNTGG 1 cut(s) 531
BstYI RGATCY 3 cut(s) 21, 40, 929
BsuRI GGCC 3 cut(s) 621, 646, 844
BtsCI GGATG 3 cut(s) 376, 664, 754
BtsIMutI CAGTG 5 cut(s) 242, 437, 533, 669, 808
Cac8I GCNNGC 4 cut(s) 533, 537, 541, 571
CciI TCATGA 1 cut(s) 325
CfoI GCGC 1 cut(s) 545
Cfr13I GGNCC 1 cut(s) 645
CviAII CATG 5 cut(s) 161, 326, 449, 649, 689
DdeI CTNAG 3 cut(s) 231, 429, 888
DpnI GATC 6 cut(s) 23, 42, 114, 344, 705, 931
DpnII GATC 6 cut(s) 21, 40, 112, 342, 703, 929
EaeI YGGCCR 1 cut(s) 619
Eam1104I CTCTTC 2 cut(s) 56, 219
EarI CTCTTC 2 cut(s) 56, 219
Eco130I CCWWGG 1 cut(s) 259
Eco147I AGGCCT 1 cut(s) 844
Eco31I GGTCTC 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 377, 923
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 781
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 5 cut(s) 164, 329, 452, 652, 692
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 1 cut(s) 696
FatI CATG 5 cut(s) 160, 325, 448, 648, 688
FbaI TGATCA 1 cut(s) 703
Fnu4HI GCNGC 2 cut(s) 619, 853
FokI GGATG 3 cut(s) 383, 671, 761
Fsp4HI GCNGC 2 cut(s) 619, 853
FspBI CTAG 4 cut(s) 195, 837, 876, 945
FspI TGCGCA 1 cut(s) 544
GlaI GCGC 1 cut(s) 544
GluI GCNGC 2 cut(s) 619, 853
HaeIII GGCC 3 cut(s) 621, 646, 844
HhaI GCGC 1 cut(s) 545
Hin1II CATG 5 cut(s) 164, 329, 452, 652, 692
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HinfI GANTC 6 cut(s) 62, 147, 227, 235, 388, 865
Hpy166II GTNNAC 2 cut(s) 7, 437
Hpy188I TCNGA 5 cut(s) 185, 232, 274, 414, 903
Hpy188III TCNNGA 3 cut(s) 19, 71, 326
Hpy8I GTNNAC 2 cut(s) 7, 437
Hpy99I CGWCG 2 cut(s) 478, 611
HpyAV CCTTC 2 cut(s) 280, 650
HpyCH4III ACNGT 5 cut(s) 474, 528, 600, 667, 803
HpyCH4V TGCA 8 cut(s) 134, 160, 467, 519, 573, 652, 766, 779
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 3 cut(s) 231, 429, 888
Hsp92II CATG 5 cut(s) 164, 329, 452, 652, 692
HspAI GCGC 1 cut(s) 543
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 6 cut(s) 21, 40, 112, 342, 703, 929
LmnI GCTCC 2 cut(s) 590, 615
Lsp1109I GCAGC 1 cut(s) 864
LweI GCATC 4 cut(s) 187, 413, 664, 766
MaeI CTAG 4 cut(s) 195, 837, 876, 945
MaeIII GTNAC 3 cut(s) 442, 661, 667
MalI GATC 6 cut(s) 23, 42, 114, 344, 705, 931
MbiI CCGCTC 1 cut(s) 618
MboI GATC 6 cut(s) 21, 40, 112, 342, 703, 929
MflI RGATCY 3 cut(s) 21, 40, 929
MluCI AATT 6 cut(s) 14, 170, 401, 456, 623, 966
MlyI GAGTC 2 cut(s) 156, 236
MmeI TCCRAC 1 cut(s) 675
MnlI CCTC 9 cut(s) 24, 59, 89, 225, 266, 639, 735, 855, 927
Mph1103I ATGCAT 1 cut(s) 781
MroXI GAANNNNTTC 2 cut(s) 66, 387
MseI TTAA 2 cut(s) 294, 497
MslI CAYNNNNRTG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 458
NdeII GATC 6 cut(s) 21, 40, 112, 342, 703, 929
NlaIII CATG 5 cut(s) 164, 329, 452, 652, 692
NlaIV GGNNCC 3 cut(s) 23, 254, 592
NmuCI GTSAC 2 cut(s) 442, 667
NsbI TGCGCA 1 cut(s) 544
NsiI ATGCAT 1 cut(s) 781
OliI CACNNNNGTG 1 cut(s) 122
PagI TCATGA 1 cut(s) 325
PceI AGGCCT 1 cut(s) 844
PdmI GAANNNNTTC 2 cut(s) 66, 387
PfeI GAWTC 4 cut(s) 62, 235, 388, 865
PflMI CCANNNNNTGG 1 cut(s) 926
PfoI TCCNGGA 1 cut(s) 24
PkrI GCNGC 2 cut(s) 620, 854
PleI GAGTC 2 cut(s) 155, 235
PpsI GAGTC 2 cut(s) 155, 235
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 3 cut(s) 23, 254, 592
PspPI GGNCC 1 cut(s) 645
PsuI RGATCY 3 cut(s) 21, 40, 929
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 2 cut(s) 294, 497
SatI GCNGC 2 cut(s) 619, 853
Sau3AI GATC 6 cut(s) 21, 40, 112, 342, 703, 929
Sau96I GGNCC 1 cut(s) 645
SchI GAGTC 2 cut(s) 156, 236
ScrFI CCNGG 1 cut(s) 26
SetI ASST 8 cut(s) 217, 258, 497, 571, 727, 763, 909, 925
SfaNI GCATC 4 cut(s) 187, 413, 664, 766
SfcI CTRYAG 1 cut(s) 756
SmiMI CAYNNNNRTG 1 cut(s) 122
SpeI ACTAGT 2 cut(s) 836, 875
Sse9I AATT 6 cut(s) 14, 170, 401, 456, 623, 966
SseBI AGGCCT 1 cut(s) 844
SsiI CCGC 1 cut(s) 618
SspMI CTAG 4 cut(s) 195, 837, 876, 945
StuI AGGCCT 1 cut(s) 844
StyD4I CCNGG 1 cut(s) 24
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 5 cut(s) 474, 528, 600, 667, 803
TaqI TCGA 4 cut(s) 70, 305, 381, 609
TasI AATT 6 cut(s) 14, 170, 401, 456, 623, 966
TauI GCSGC 1 cut(s) 621
TfiI GAWTC 4 cut(s) 62, 235, 388, 865
Tru1I TTAA 2 cut(s) 294, 497
Tru9I TTAA 2 cut(s) 294, 497
TscAI CASTG 5 cut(s) 249, 437, 533, 676, 808
TseFI GTSAC 2 cut(s) 442, 667
TseI GCWGC 1 cut(s) 852
Tsp45I GTSAC 2 cut(s) 442, 667
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 5 cut(s) 249, 437, 533, 676, 808
Van91I CCANNNNNTGG 1 cut(s) 926
XapI RAATTY 2 cut(s) 14, 966
XmnI GAANNNNTTC 2 cut(s) 66, 387
XspI CTAG 4 cut(s) 195, 837, 876, 945
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.