Rmu_sc0006898.1_g000008

Helicase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006898.1
OG0000169
Physical Location & Seq
Reverse (-)
31182 .. 33535
2354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006898.1_g000008.1.cds

Sequence Viewer

Length: 936 bp
atggtgcaagccagtttaattaatgcttccttttggaaggatgtgaagatccttcatttgagacaaaatatgagatctatcaatgatcctgagttcttagagtttttactccaagttggtaatggagaacaacagactgtgattgaagacatgatacaattaccttcacctatgatcataccacgggagggtgaagaaccaatcaaccaattagtcaatgaagtgtttcctaatttgaattgccatgttaatgatgtttcgtatatggttgaaagggcaataattactccagaaaacgatgatgtggatgtactcaatgaaatgatcataaagcggtttccgggaccagtgcgcatcttatactctttcgactctgttgaggatgacacaagaaatatgtacgaacaagaattcttaaattcaatttccccttctgtgtctgctaagcatcagggagaccttctctccccttccccgactgtcccaaggaagaagcggcctggttttcatcgagtggagcgcccaacctccttttctcccagtgagtcggctccaaaaatagtcaatactggtgaggttcccgaactggctattcctagcgacactgttactactccaggtacacagaagcaccagcctgttttgctatccaaaaaacgggagcgtggtggtgctggccatcctagtcccaagaagtttaaaacaatcttgggtggcaagattccaacactgcacgctgaggctcttggtctcattgaggaggatgacgacctcactttggtctcgttgaaaaagaaatctggtaggcctcttggaagcaagaataaggctcatcgtgcaaacaagaagctggatggtattcccctgaagattacctatcctactagtactgaaactggtcctagccctagggacaagggcaaaggaaagagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

311

Amino Acids

34.55

Weight (kDa)

7.82

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 353
AciI CCGC 2 cut(s) 334, 496
AclWI GGATC 2 cut(s) 43, 80
AcoI YGGCCR 1 cut(s) 676
AcsI RAATTY 2 cut(s) 410, 418
AcuI CTGAAG 1 cut(s) 887
AfaI GTAC 4 cut(s) 312, 401, 622, 889
AfiI CCNNNNNNNGG 3 cut(s) 188, 657, 778
AgsI TTSAA 5 cut(s) 146, 238, 272, 423, 790
AhlI ACTAGT 1 cut(s) 884
AjnI CCWGG 2 cut(s) 499, 616
AjuI GAANNNNNNNTTGG 2 cut(s) 517, 549
AluBI AGCT 1 cut(s) 850
AluI AGCT 1 cut(s) 850
Alw26I GTCTC 4 cut(s) 55, 450, 755, 787
AlwI GGATC 2 cut(s) 43, 80
AoxI GGCC 3 cut(s) 497, 676, 806
ApoI RAATTY 2 cut(s) 410, 418
AseI ATTAAT 1 cut(s) 21
Asp700I GAANNNNTTC 1 cut(s) 225
AspA2I CCTAGG 1 cut(s) 908
AspLEI GCGC 2 cut(s) 354, 522
AspS9I GGNCC 2 cut(s) 344, 899
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 3 cut(s) 159, 203, 584
AvaII GGWCC 2 cut(s) 344, 899
AvrII CCTAGG 1 cut(s) 908
BalI TGGCCA 1 cut(s) 678
BarI GAAGNNNNNNTAC 2 cut(s) 138, 170
BbsI GAAGAC 1 cut(s) 153
BbvCI CCTCAGC 1 cut(s) 738
BccI CCATC 2 cut(s) 687, 848
BciT130I CCWGG 2 cut(s) 501, 618
BclI TGATCA 2 cut(s) 174, 324
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 4 cut(s) 55, 450, 755, 787
BcuI ACTAGT 1 cut(s) 884
BfaI CTAG 5 cut(s) 597, 684, 885, 903, 909
BfoI RGCGCY 1 cut(s) 523
BglII AGATCT 1 cut(s) 74
BisI GCNGC 1 cut(s) 497
BlnI CCTAGG 1 cut(s) 908
BlpI GCTNAGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 498
BmcAI AGTACT 1 cut(s) 889
Bme1390I CCNGG 3 cut(s) 342, 501, 618
Bme18I GGWCC 2 cut(s) 344, 899
BmgT120I GGNCC 2 cut(s) 344, 899
BmiI GGNNCC 3 cut(s) 345, 552, 579
BmrFI CCNGG 3 cut(s) 342, 501, 618
BmrI ACTGGG 1 cut(s) 534
BmsI GCATC 2 cut(s) 363, 457
BmuI ACTGGG 1 cut(s) 534
BpiI GAAGAC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 447, 479
BpmI CTGGAG 2 cut(s) 273, 600
Bpu10I CCTNAGC 1 cut(s) 738
Bpu1102I GCTNAGC 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 342
BsaI GGTCTC 3 cut(s) 450, 755, 787
BsaJI CCNNGG 3 cut(s) 182, 485, 908
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 657, 778
Bse1I ACTGG 6 cut(s) 12, 347, 540, 574, 591, 901
BseBI CCWGG 2 cut(s) 501, 618
BseDI CCNNGG 3 cut(s) 182, 485, 908
BseGI GGATG 6 cut(s) 46, 313, 388, 679, 769, 859
BseLI CCNNNNNNNGG 3 cut(s) 188, 657, 778
BseMII CTCAG 2 cut(s) 81, 729
BseNI ACTGG 6 cut(s) 12, 347, 540, 574, 591, 901
BseRI GAGGAG 1 cut(s) 773
BsgI GTGCAG 1 cut(s) 716
BshFI GGCC 3 cut(s) 499, 678, 808
BsiSI CCGG 1 cut(s) 341
BslFI GGGAC 4 cut(s) 357, 467, 672, 926
BslI CCNNNNNNNGG 3 cut(s) 188, 657, 778
BsmAI GTCTC 4 cut(s) 55, 450, 755, 787
BsmFI GGGAC 4 cut(s) 357, 467, 672, 926
BsnI GGCC 3 cut(s) 499, 678, 808
Bso31I GGTCTC 3 cut(s) 450, 755, 787
Bsp143I GATC 5 cut(s) 48, 74, 85, 174, 324
Bsp1720I GCTNAGC 1 cut(s) 444
BspACI CCGC 2 cut(s) 334, 496
BspANI GGCC 3 cut(s) 499, 678, 808
BspCNI CTCAG 2 cut(s) 82, 730
BspLI GGNNCC 3 cut(s) 345, 552, 579
BspPI GGATC 2 cut(s) 43, 80
BspTNI GGTCTC 3 cut(s) 450, 755, 787
BsrI ACTGG 6 cut(s) 12, 347, 540, 574, 591, 901
BssECI CCNNGG 3 cut(s) 182, 485, 908
BssMI GATC 5 cut(s) 48, 74, 85, 174, 324
BssT1I CCWWGG 2 cut(s) 485, 908
Bst2UI CCWGG 2 cut(s) 501, 618
Bst4CI ACNGT 3 cut(s) 139, 481, 607
BstC8I GCNNGC 3 cut(s) 9, 676, 735
BstDEI CTNAG 4 cut(s) 90, 97, 444, 738
BstDSI CCRYGG 1 cut(s) 182
BstF5I GGATG 6 cut(s) 46, 313, 388, 679, 769, 859
BstH2I RGCGCY 1 cut(s) 523
BstHHI GCGC 2 cut(s) 354, 522
BstKTI GATC 5 cut(s) 51, 77, 88, 177, 327
BstMAI GTCTC 4 cut(s) 55, 450, 755, 787
BstMBI GATC 5 cut(s) 48, 74, 85, 174, 324
BstMWI GCNNNNNNNGC 2 cut(s) 643, 836
BstNI CCWGG 2 cut(s) 501, 618
BstSCI CCNGG 3 cut(s) 340, 499, 616
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 2 cut(s) 48, 74
BstYI RGATCY 2 cut(s) 48, 74
BsuRI GGCC 3 cut(s) 499, 678, 808
BtgI CCRYGG 1 cut(s) 182
BtsCI GGATG 6 cut(s) 46, 313, 388, 679, 769, 859
BtsI GCAGTG 1 cut(s) 728
BtsIMutI CAGTG 4 cut(s) 354, 547, 603, 728
Cac8I GCNNGC 3 cut(s) 9, 676, 735
CfoI GCGC 2 cut(s) 354, 522
Cfr13I GGNCC 2 cut(s) 344, 899
Csp6I GTAC 4 cut(s) 311, 400, 621, 888
CviAII CATG 2 cut(s) 151, 245
CviQI GTAC 4 cut(s) 311, 400, 621, 888
DdeI CTNAG 4 cut(s) 90, 97, 444, 738
DpnI GATC 5 cut(s) 50, 76, 87, 176, 326
DpnII GATC 5 cut(s) 48, 74, 85, 174, 324
DraI TTTAAA 1 cut(s) 700
EaeI YGGCCR 1 cut(s) 676
Eco130I CCWWGG 2 cut(s) 485, 908
Eco147I AGGCCT 1 cut(s) 808
Eco31I GGTCTC 3 cut(s) 450, 755, 787
Eco47I GGWCC 2 cut(s) 344, 899
Eco57I CTGAAG 1 cut(s) 887
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 499, 616
EcoT14I CCWWGG 2 cut(s) 485, 908
ErhI CCWWGG 2 cut(s) 485, 908
FaeI CATG 2 cut(s) 154, 248
FaqI GGGAC 4 cut(s) 357, 467, 672, 926
FatI CATG 2 cut(s) 150, 244
FbaI TGATCA 2 cut(s) 174, 324
Fnu4HI GCNGC 1 cut(s) 497
FokI GGATG 6 cut(s) 53, 320, 395, 666, 776, 866
Fsp4HI GCNGC 1 cut(s) 497
FspAI RTGCGCAY 1 cut(s) 353
FspBI CTAG 5 cut(s) 597, 684, 885, 903, 909
FspI TGCGCA 1 cut(s) 353
GlaI GCGC 2 cut(s) 353, 521
GluI GCNGC 1 cut(s) 497
GsuI CTGGAG 2 cut(s) 273, 600
HaeII RGCGCY 1 cut(s) 523
HaeIII GGCC 3 cut(s) 499, 678, 808
HapII CCGG 1 cut(s) 341
HhaI GCGC 2 cut(s) 354, 522
Hin1II CATG 2 cut(s) 154, 248
Hin6I GCGC 2 cut(s) 352, 520
HinP1I GCGC 2 cut(s) 352, 520
HinfI GANTC 3 cut(s) 371, 545, 721
HpaII CCGG 1 cut(s) 341
HphI GGTGA 3 cut(s) 159, 203, 584
Hpy166II GTNNAC 1 cut(s) 623
Hpy188III TCNNGA 3 cut(s) 89, 290, 581
Hpy8I GTNNAC 1 cut(s) 623
HpyAV CCTTC 6 cut(s) 31, 62, 174, 441, 470, 480
HpyCH4III ACNGT 3 cut(s) 139, 481, 607
HpyCH4V TGCA 3 cut(s) 7, 733, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 643, 836
HpyF3I CTNAG 4 cut(s) 90, 97, 444, 738
Hsp92II CATG 2 cut(s) 154, 248
HspAI GCGC 2 cut(s) 352, 520
Ksp22I TGATCA 2 cut(s) 174, 324
Kzo9I GATC 5 cut(s) 48, 74, 85, 174, 324
LmnI GCTCC 3 cut(s) 517, 556, 661
LweI GCATC 2 cut(s) 363, 457
MaeI CTAG 5 cut(s) 597, 684, 885, 903, 909
MaeIII GTNAC 1 cut(s) 607
MalI GATC 5 cut(s) 50, 76, 87, 176, 326
MboI GATC 5 cut(s) 48, 74, 85, 174, 324
MboII GAAGA 5 cut(s) 58, 158, 206, 502, 880
MflI RGATCY 2 cut(s) 48, 74
MlsI TGGCCA 1 cut(s) 678
MluCI AATT 9 cut(s) 18, 158, 209, 232, 238, 282, 410, 418, 423
MluNI TGGCCA 1 cut(s) 678
MlyI GAGTC 2 cut(s) 365, 554
MmeI TCCRAC 1 cut(s) 749
MnlI CCTC 9 cut(s) 181, 373, 538, 568, 733, 751, 754, 782, 819
Mox20I TGGCCA 1 cut(s) 678
MroXI GAANNNNTTC 1 cut(s) 225
MscI TGGCCA 1 cut(s) 678
MseI TTAA 6 cut(s) 17, 21, 249, 416, 699, 934
MslI CAYNNNNRTG 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 678
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 3 cut(s) 342, 501, 618
MvaI CCWGG 2 cut(s) 501, 618
MwoI GCNNNNNNNGC 2 cut(s) 643, 836
NciI CCSGG 1 cut(s) 342
NdeII GATC 5 cut(s) 48, 74, 85, 174, 324
NlaIII CATG 2 cut(s) 154, 248
NlaIV GGNNCC 3 cut(s) 345, 552, 579
NsbI TGCGCA 1 cut(s) 353
PacI TTAATTAA 1 cut(s) 21
PceI AGGCCT 1 cut(s) 808
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 721
PfoI TCCNGGA 1 cut(s) 340
PkrI GCNGC 1 cut(s) 498
PleI GAGTC 2 cut(s) 365, 553
PpsI GAGTC 2 cut(s) 365, 553
PshBI ATTAAT 1 cut(s) 21
Psp6I CCWGG 2 cut(s) 499, 616
PspGI CCWGG 2 cut(s) 499, 616
PspN4I GGNNCC 3 cut(s) 345, 552, 579
PspPI GGNCC 2 cut(s) 344, 899
PsuI RGATCY 2 cut(s) 48, 74
RsaI GTAC 4 cut(s) 312, 401, 622, 889
RsaNI GTAC 4 cut(s) 311, 400, 621, 888
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 6 cut(s) 17, 21, 249, 416, 699, 934
SatI GCNGC 1 cut(s) 497
Sau3AI GATC 5 cut(s) 48, 74, 85, 174, 324
Sau96I GGNCC 2 cut(s) 344, 899
ScaI AGTACT 1 cut(s) 889
SchI GAGTC 2 cut(s) 365, 554
ScrFI CCNGG 3 cut(s) 342, 501, 618
SetI ASST 9 cut(s) 166, 172, 462, 530, 579, 622, 774, 852, 878
SfaNI GCATC 2 cut(s) 363, 457
SinI GGWCC 2 cut(s) 344, 899
SmiMI CAYNNNNRTG 1 cut(s) 249
SpeI ACTAGT 1 cut(s) 884
Sse9I AATT 9 cut(s) 18, 158, 209, 232, 238, 282, 410, 418, 423
SseBI AGGCCT 1 cut(s) 808
SsiI CCGC 2 cut(s) 334, 496
SspMI CTAG 5 cut(s) 597, 684, 885, 903, 909
StuI AGGCCT 1 cut(s) 808
StyD4I CCNGG 3 cut(s) 340, 499, 616
StyI CCWWGG 2 cut(s) 485, 908
TaaI ACNGT 3 cut(s) 139, 481, 607
TaqI TCGA 2 cut(s) 369, 511
TasI AATT 9 cut(s) 18, 158, 209, 232, 238, 282, 410, 418, 423
TatI WGTACW 2 cut(s) 310, 887
TauI GCSGC 1 cut(s) 499
TfiI GAWTC 1 cut(s) 721
Tru1I TTAA 6 cut(s) 17, 21, 249, 416, 699, 934
Tru9I TTAA 6 cut(s) 17, 21, 249, 416, 699, 934
TscAI CASTG 4 cut(s) 354, 547, 610, 735
TspDTI ATGAA 4 cut(s) 44, 234, 333, 497
TspRI CASTG 4 cut(s) 354, 547, 610, 735
VpaK11BI GGWCC 2 cut(s) 344, 899
VspI ATTAAT 1 cut(s) 21
XapI RAATTY 2 cut(s) 410, 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XmaJI CCTAGG 1 cut(s) 908
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 5 cut(s) 597, 684, 885, 903, 909
ZrmI AGTACT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.