FvH4_6g17062

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000169
Physical Location & Seq
Reverse (-)
11028554 .. 11029868
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17062.t1

Sequence Viewer

Length: 558 bp
ATGGCTTTGCTACTGACGTGTGAGGAGCGTCCGGCTCTTAACCCGGTGGCTCCAACTCTGATTTTCCCTCATTCAGCCCCTCCACCTGGTTATGCCTTTGCTGTTAAATCTCCAGGTCCTTTGGTAGAGGCTGCCTCTGCACAGCCAAAGAAGAAGGAGAAGAAGAAGCCTGTAATTTGGCACTCGGAGTCAGTAGAGGCAACAACTTTGCCATCTGAGAATGCATGTACTGAGATTGGATTGCAAGGACCTATTCTGCAAGATAGCTCTTTGATCAGTGATGATGGTGGAGAACTAGGGATGACAATTAAACTCAAAACCATTCTTGGGGGAAAGGTTCATGTGTTGCATGCTGAATCTCTAGGGCTGTCAGAGTCTGATCTTGACTCAACCCTGGTCTCCCTGAAGAAGAAGAAGAAGGTTGGTAGGCCTCTTGGTAGCCTTAACAAAGTACCAAAGCCTGTGAAGGAATCAGTTGCTCCGCCTCAACGTATCTCAACCCCAAAGTTTGGCAAGGGAGAGGCTAGCCCTAATAACAACGGCAATGAGGTAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.46

Weight (kDa)

9.02

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 509
AciI CCGC 1 cut(s) 482
AcuI CTGAAG 1 cut(s) 425
AfaI GTAC 2 cut(s) 229, 453
AfiI CCNNNNNNNGG 3 cut(s) 86, 327, 509
AflIII ACRYGT 1 cut(s) 17
AjiI CACGTC 1 cut(s) 18
AjnI CCWGG 3 cut(s) 85, 112, 393
AluBI AGCT 2 cut(s) 267, 554
AluI AGCT 2 cut(s) 267, 554
Alw26I GTCTC 1 cut(s) 403
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 1 cut(s) 428
ApeKI GCWGC 1 cut(s) 131
AspS9I GGNCC 2 cut(s) 116, 248
AsuC2I CCSGG 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 524
AvaII GGWCC 2 cut(s) 116, 248
BbvI GCAGC 1 cut(s) 118
BccI CCATC 2 cut(s) 220, 278
BceAI ACGGC 1 cut(s) 556
BciT130I CCWGG 3 cut(s) 87, 114, 395
BclI TGATCA 1 cut(s) 273
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 3 cut(s) 296, 362, 525
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 4 cut(s) 44, 87, 114, 395
Bme18I GGWCC 2 cut(s) 116, 248
BmgBI CACGTC 1 cut(s) 18
BmgT120I GGNCC 2 cut(s) 116, 248
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 4 cut(s) 44, 87, 114, 395
BmtI GCTAGC 1 cut(s) 528
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 1 cut(s) 96
BpuMI CCSGG 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 393
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 327, 509
Bse3DI GCAATG 1 cut(s) 550
BseBI CCWGG 3 cut(s) 87, 114, 395
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 3 cut(s) 86, 327, 509
BseMI GCAATG 1 cut(s) 550
BseMII CTCAG 2 cut(s) 207, 222
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 118
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 1 cut(s) 430
BsiSI CCGG 2 cut(s) 32, 44
BslI CCNNNNNNNGG 3 cut(s) 86, 327, 509
BsmAI GTCTC 1 cut(s) 403
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 1 cut(s) 430
Bso31I GGTCTC 1 cut(s) 403
Bsp143I GATC 2 cut(s) 273, 379
BspACI CCGC 1 cut(s) 482
BspANI GGCC 1 cut(s) 430
BspCNI CTCAG 2 cut(s) 208, 223
BspLI GGNNCC 1 cut(s) 51
BspOI GCTAGC 1 cut(s) 528
BspTNI GGTCTC 1 cut(s) 403
BsrDI GCAATG 1 cut(s) 550
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 2 cut(s) 273, 379
Bst2UI CCWGG 3 cut(s) 87, 114, 395
BstC8I GCNNGC 2 cut(s) 351, 526
BstDEI CTNAG 2 cut(s) 216, 231
BstF5I GGATG 1 cut(s) 306
BstKTI GATC 2 cut(s) 276, 382
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 2 cut(s) 273, 379
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 3 cut(s) 87, 114, 395
BstNSI RCATGY 2 cut(s) 228, 353
BstSCI CCNGG 4 cut(s) 42, 85, 112, 393
BstV1I GCAGC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 430
BtrI CACGTC 1 cut(s) 18
BtsCI GGATG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 2 cut(s) 351, 526
CaiI CAGNNNCTG 1 cut(s) 377
Cfr13I GGNCC 2 cut(s) 116, 248
CseI GACGC 1 cut(s) 17
CsiI ACCWGGT 1 cut(s) 85
Csp6I GTAC 2 cut(s) 228, 452
CviAII CATG 3 cut(s) 225, 341, 350
CviQI GTAC 2 cut(s) 228, 452
DdeI CTNAG 2 cut(s) 216, 231
DpnI GATC 2 cut(s) 275, 381
DpnII GATC 2 cut(s) 273, 379
EciI GGCGGA 1 cut(s) 471
Eco147I AGGCCT 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 403
Eco47I GGWCC 2 cut(s) 116, 248
Eco57I CTGAAG 1 cut(s) 425
EcoO109I RGGNCCY 2 cut(s) 116, 248
EcoRII CCWGG 3 cut(s) 85, 112, 393
EcoT22I ATGCAT 1 cut(s) 226
FaeI CATG 3 cut(s) 228, 344, 353
FaiI YATR 4 cut(s) 93, 226, 342, 351
FatI CATG 3 cut(s) 224, 340, 349
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 3 cut(s) 296, 362, 525
GluI GCNGC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 430
HapII CCGG 2 cut(s) 32, 44
HgaI GACGC 1 cut(s) 17
Hin1II CATG 3 cut(s) 228, 344, 353
HinfI GANTC 5 cut(s) 188, 356, 374, 386, 470
HpaII CCGG 2 cut(s) 32, 44
Hpy188I TCNGA 5 cut(s) 60, 187, 217, 373, 379
Hpy188III TCNNGA 1 cut(s) 383
HpyAV CCTTC 3 cut(s) 148, 412, 460
HpyCH4IV ACGT 2 cut(s) 17, 490
HpyCH4V TGCA 5 cut(s) 140, 224, 244, 259, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 216, 231
HpySE526I ACGT 2 cut(s) 17, 490
Hsp92II CATG 3 cut(s) 228, 344, 353
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 2 cut(s) 273, 379
LmnI GCTCC 3 cut(s) 25, 55, 484
Lsp1109I GCAGC 1 cut(s) 118
MabI ACCWGGT 1 cut(s) 85
MaeI CTAG 3 cut(s) 296, 362, 525
MaeII ACGT 2 cut(s) 17, 490
MalI GATC 2 cut(s) 275, 381
MboI GATC 2 cut(s) 273, 379
MboII GAAGA 7 cut(s) 163, 172, 175, 418, 421, 424, 427
MluCI AATT 2 cut(s) 174, 306
MlyI GAGTC 3 cut(s) 197, 380, 383
MmeI TCCRAC 1 cut(s) 77
Mph1103I ATGCAT 1 cut(s) 226
MseI TTAA 5 cut(s) 39, 105, 309, 444, 556
MspI CCGG 2 cut(s) 32, 44
MspR9I CCNGG 4 cut(s) 44, 87, 114, 395
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 3 cut(s) 87, 114, 395
MwoI GCNNNNNNNGC 1 cut(s) 137
NciI CCSGG 1 cut(s) 44
NdeII GATC 2 cut(s) 273, 379
NheI GCTAGC 1 cut(s) 524
NlaIII CATG 3 cut(s) 228, 344, 353
NlaIV GGNNCC 1 cut(s) 51
NsiI ATGCAT 1 cut(s) 226
NspI RCATGY 2 cut(s) 228, 353
PaeI GCATGC 1 cut(s) 353
PceI AGGCCT 1 cut(s) 430
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 356, 470
PflMI CCANNNNNTGG 1 cut(s) 509
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 3 cut(s) 196, 380, 382
PpsI GAGTC 3 cut(s) 196, 380, 382
PpuMI RGGWCCY 2 cut(s) 116, 248
Psp5II RGGWCCY 2 cut(s) 116, 248
Psp6I CCWGG 3 cut(s) 85, 112, 393
PspGI CCWGG 3 cut(s) 85, 112, 393
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 2 cut(s) 116, 248
PspPPI RGGWCCY 2 cut(s) 116, 248
PstNI CAGNNNCTG 1 cut(s) 377
RsaI GTAC 2 cut(s) 229, 453
RsaNI GTAC 2 cut(s) 228, 452
SaqAI TTAA 5 cut(s) 39, 105, 309, 444, 556
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 273, 379
Sau96I GGNCC 2 cut(s) 116, 248
SchI GAGTC 3 cut(s) 197, 380, 383
ScrFI CCNGG 4 cut(s) 44, 87, 114, 395
SexAI ACCWGGT 1 cut(s) 85
SinI GGWCC 2 cut(s) 116, 248
SphI GCATGC 1 cut(s) 353
Sse9I AATT 2 cut(s) 174, 306
SseBI AGGCCT 1 cut(s) 430
SsiI CCGC 1 cut(s) 482
SspMI CTAG 3 cut(s) 296, 362, 525
StuI AGGCCT 1 cut(s) 430
StyD4I CCNGG 4 cut(s) 42, 85, 112, 393
TaiI ACGT 2 cut(s) 20, 493
TasI AATT 2 cut(s) 174, 306
TatI WGTACW 1 cut(s) 227
TfiI GAWTC 2 cut(s) 356, 470
Tru1I TTAA 5 cut(s) 39, 105, 309, 444, 556
Tru9I TTAA 5 cut(s) 39, 105, 309, 444, 556
TscAI CASTG 1 cut(s) 283
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 1 cut(s) 283
Van91I CCANNNNNTGG 1 cut(s) 509
VpaK11BI GGWCC 2 cut(s) 116, 248
XceI RCATGY 2 cut(s) 228, 353
XspI CTAG 3 cut(s) 296, 362, 525
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.