Rmu_sc0002356.1_g000008

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002356.1
OG0000169
Physical Location & Seq
Forward (+)
32644 .. 33926
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002356.1_g000008.1.cds

Sequence Viewer

Length: 711 bp
atggcttccattgatgcagtcacagcgagctttgctgcctcccttgctcttgctaagggcggtagcgcccttgatctggggaaaattggtggtgagtatgatggagtcaaaccattgcatgaagtccaattcaagcatctccgagtttgggttagggtttctagaataccacatctttatgaagagcttgagaatctcacactgattgggagcctcctcgggggttttttggattatgataagaatgagttcaagaaaggctcgattaggtttcaatttgaacatttgaaagggagatgctctcagtgtggacttgtcactcatgccggaattgcttgtgcggaactgtgtatggcaaaccctactcatagggtattgcattttcctggaccatcggcatctggaggggattttggtatgactaatgcttctttggagcacgagttagagaaggatcagagtcccatgttagaaccttccatagagacttgtgatttggatggttctgcaggtatgcaagtgcatcaagaagctgatgacagtgatgttgctttgctaactttgaagaagaagaccggcaggcctcttggcagcaagaataagaatcagtgcactagtaaaaagactaatggtagtcttctgaagctcacctatcctccaaccattggttctgcttccagccctagagagaagggcaaaggaaaactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 RVT_3 zf-CCHC_4

Protein Analysis

236

Amino Acids

25.36

Weight (kDa)

7.66

Isoelectric Point (pI)

24.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 500
AccB7I CCANNNNNTGG 1 cut(s) 665
AciI CCGC 2 cut(s) 60, 341
AclWI GGATC 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 662
AfiI CCNNNNNNNGG 4 cut(s) 76, 148, 220, 665
AgsI TTSAA 6 cut(s) 133, 253, 275, 281, 289, 565
AhlI ACTAGT 1 cut(s) 614
AjnI CCWGG 1 cut(s) 385
AjuI GAANNNNNNNTTGG 2 cut(s) 652, 684
AluBI AGCT 4 cut(s) 30, 187, 533, 646
AluI AGCT 4 cut(s) 30, 187, 533, 646
Alw21I GWGCWC 2 cut(s) 441, 614
Alw26I GTCTC 1 cut(s) 479
Alw44I GTGCAC 1 cut(s) 610
AlwI GGATC 1 cut(s) 462
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 1 cut(s) 581
ApaLI GTGCAC 1 cut(s) 610
ApeKI GCWGC 2 cut(s) 35, 591
ArsI GACNNNNNNTTYG 2 cut(s) 478, 510
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 389
AsuHPI GGTGA 2 cut(s) 104, 640
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 1 cut(s) 389
BaeGI GKGCMC 1 cut(s) 614
BauI CACGAG 1 cut(s) 440
BbsI GAAGAC 2 cut(s) 578, 629
Bbv12I GWGCWC 2 cut(s) 441, 614
BbvI GCAGC 2 cut(s) 22, 603
BccI CCATC 3 cut(s) 95, 400, 494
BciT130I CCWGG 1 cut(s) 387
BcoDI GTCTC 1 cut(s) 479
BcuI ACTAGT 1 cut(s) 614
BfaI CTAG 3 cut(s) 162, 615, 684
BfmI CTRYAG 1 cut(s) 507
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 500
BisI GCNGC 2 cut(s) 36, 592
BlsI GCNGC 2 cut(s) 37, 593
Bme1390I CCNGG 1 cut(s) 387
Bme18I GGWCC 1 cut(s) 389
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 387
BmsI GCATC 5 cut(s) 4, 145, 287, 407, 532
BpiI GAAGAC 2 cut(s) 578, 629
BplI GAGNNNNNCTC 2 cut(s) 286, 318
BpmI CTGGAG 1 cut(s) 423
Bpu10I CCTNAGC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 217
BsaXI ACNNNNNCTCC 4 cut(s) 428, 458, 640, 670
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 148, 220, 665
Bse118I RCCGGY 1 cut(s) 575
Bse3DI GCAATG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 4 cut(s) 76, 148, 220, 665
BseMI GCAATG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 614
BseXI GCAGC 2 cut(s) 22, 603
BshFI GGCC 1 cut(s) 583
BsiHKAI GWGCWC 2 cut(s) 441, 614
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 2 cut(s) 327, 576
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 4 cut(s) 76, 148, 220, 665
BsmAI GTCTC 1 cut(s) 479
BsmFI GGGAC 1 cut(s) 447
BsnI GGCC 1 cut(s) 583
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 441, 614
Bsp143I GATC 2 cut(s) 73, 454
BspACI CCGC 2 cut(s) 60, 341
BspANI GGCC 1 cut(s) 583
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 212
BspMAI CTGCAG 1 cut(s) 511
BspMI ACCTGC 1 cut(s) 500
BspPI GGATC 1 cut(s) 462
BspQI GCTCTTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 575
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 2 cut(s) 73, 454
BssSI CACGAG 1 cut(s) 440
Bst2BI CACGAG 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 348, 542
Bst6I CTCTTC 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 28, 581
BstDEI CTNAG 2 cut(s) 54, 303
BstF5I GGATG 1 cut(s) 505
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 2 cut(s) 76, 457
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 2 cut(s) 73, 454
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 332
BstNI CCWGG 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 614
BstV1I GCAGC 2 cut(s) 22, 603
BstV2I GAAGAC 2 cut(s) 578, 629
BsuRI GGCC 1 cut(s) 583
BtsCI GGATG 1 cut(s) 505
BtsIMutI CAGTG 4 cut(s) 200, 311, 547, 614
BveI ACCTGC 1 cut(s) 500
Cac8I GCNNGC 2 cut(s) 28, 581
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 575
Cfr13I GGNCC 1 cut(s) 389
CviAII CATG 3 cut(s) 119, 323, 466
CviJI RGCY 9 cut(s) 5, 30, 187, 213, 261, 533, 583, 646, 681
CviKI_1 RGCY 9 cut(s) 5, 30, 187, 213, 261, 533, 583, 646, 681
DdeI CTNAG 2 cut(s) 54, 303
DpnI GATC 2 cut(s) 75, 456
DpnII GATC 2 cut(s) 73, 454
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 662
Eco88I CYCGRG 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 385
FaeI CATG 3 cut(s) 122, 326, 469
FalI AAGNNNNNCTT 1 cut(s) 690
FaqI GGGAC 1 cut(s) 447
FatI CATG 3 cut(s) 118, 322, 465
Fnu4HI GCNGC 2 cut(s) 36, 592
FokI GGATG 1 cut(s) 512
Fsp4HI GCNGC 2 cut(s) 36, 592
FspBI CTAG 3 cut(s) 162, 615, 684
GlaI GCGC 1 cut(s) 67
GluI GCNGC 2 cut(s) 36, 592
GsuI CTGGAG 1 cut(s) 423
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 583
HapII CCGG 2 cut(s) 327, 576
HhaI GCGC 1 cut(s) 68
Hin1II CATG 3 cut(s) 122, 326, 469
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 4 cut(s) 105, 193, 460, 604
HpaII CCGG 2 cut(s) 327, 576
HphI GGTGA 2 cut(s) 104, 640
Hpy166II GTNNAC 2 cut(s) 311, 612
Hpy188I TCNGA 3 cut(s) 143, 459, 642
Hpy188III TCNNGA 4 cut(s) 162, 253, 402, 527
Hpy8I GTNNAC 2 cut(s) 311, 612
HpyAV CCTTC 3 cut(s) 445, 486, 685
HpyCH4III ACNGT 2 cut(s) 348, 542
HpyCH4V TGCA 7 cut(s) 17, 118, 379, 509, 517, 523, 612
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 332
HpyF3I CTNAG 2 cut(s) 54, 303
Hsp92II CATG 3 cut(s) 122, 326, 469
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 2 cut(s) 73, 454
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 2 cut(s) 210, 436
LpnPI CCDG 9 cut(s) 62, 340, 372, 387, 399, 495, 565, 589, 691
Lsp1109I GCAGC 2 cut(s) 22, 603
LweI GCATC 5 cut(s) 4, 145, 287, 407, 532
MaeI CTAG 3 cut(s) 162, 615, 684
MaeIII GTNAC 2 cut(s) 19, 316
MalI GATC 2 cut(s) 75, 456
MboI GATC 2 cut(s) 73, 454
MboII GAAGA 5 cut(s) 194, 577, 580, 583, 629
MhlI GDGCHC 2 cut(s) 441, 614
MluCI AATT 4 cut(s) 84, 128, 275, 330
MlyI GAGTC 2 cut(s) 114, 469
MmeI TCCRAC 1 cut(s) 683
MnlI CCTC 6 cut(s) 49, 224, 227, 398, 594, 666
MroXI GAANNNNTTC 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 2 cut(s) 327, 576
MspR9I CCNGG 1 cut(s) 387
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 332
NdeII GATC 2 cut(s) 73, 454
NlaIII CATG 3 cut(s) 122, 326, 469
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 2 cut(s) 19, 316
PceI AGGCCT 1 cut(s) 583
PciSI GCTCTTC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 2 cut(s) 193, 604
PflMI CCANNNNNTGG 1 cut(s) 665
PfoI TCCNGGA 1 cut(s) 385
PkrI GCNGC 2 cut(s) 37, 593
PleI GAGTC 2 cut(s) 113, 468
PpsI GAGTC 2 cut(s) 113, 468
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 1 cut(s) 389
PstI CTGCAG 1 cut(s) 511
RseI CAYNNNNRTG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 177
SatI GCNGC 2 cut(s) 36, 592
Sau3AI GATC 2 cut(s) 73, 454
Sau96I GGNCC 1 cut(s) 389
SchI GAGTC 2 cut(s) 114, 469
ScrFI CCNGG 1 cut(s) 387
SduI GDGCHC 2 cut(s) 441, 614
SetI ASST 8 cut(s) 32, 189, 272, 478, 514, 535, 648, 653
SfaNI GCATC 5 cut(s) 4, 145, 287, 407, 532
SfcI CTRYAG 1 cut(s) 507
SinI GGWCC 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SpeI ACTAGT 1 cut(s) 614
Sse9I AATT 4 cut(s) 84, 128, 275, 330
SseBI AGGCCT 1 cut(s) 583
SsiI CCGC 2 cut(s) 60, 341
SspMI CTAG 3 cut(s) 162, 615, 684
StuI AGGCCT 1 cut(s) 583
StyD4I CCNGG 1 cut(s) 385
TaaI ACNGT 2 cut(s) 348, 542
TaqI TCGA 1 cut(s) 263
TasI AATT 4 cut(s) 84, 128, 275, 330
TfiI GAWTC 2 cut(s) 193, 604
TscAI CASTG 4 cut(s) 207, 311, 547, 614
TseFI GTSAC 2 cut(s) 19, 316
TseI GCWGC 2 cut(s) 35, 591
Tsp45I GTSAC 2 cut(s) 19, 316
TspDTI ATGAA 2 cut(s) 135, 195
TspRI CASTG 4 cut(s) 207, 311, 547, 614
Van91I CCANNNNNTGG 1 cut(s) 665
VneI GTGCAC 1 cut(s) 610
VpaK11BI GGWCC 1 cut(s) 389
XbaI TCTAGA 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 3 cut(s) 162, 615, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.