Rroxscaffold_1G00046590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000169
Physical Location & Seq
Reverse (-)
65832107 .. 65832839
733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046590.1

Sequence Viewer

Length: 342 bp
ATGGCCTCCATTGATGCTATCACCGCTAGCTGTGCTGCCTTCATTGCGCTTGCAAAGGGAGGTAGTGCTCCCGATCCGGGGAGAATTGGTGGCGGCCACGTTTGTCGGTCTCCCAAATCTTTTCGATTGGGAAGCCTCGATACGTCGACCGGTCAACCCTACGGCCTTCAAGGCTCCCCTCCTTTGTACCCGGATGGATGTCACTCGGTGATGTTGAAGAAGAAGTTGGGCAAGAATCATCGCCCTAGCACGAAGCCGAATGTCGCCGCTTTACGACTCTCTTACCCTGCGATTCTTGGTATTGATCTCAATCCTAGCGACAAGGGCAAGGGAAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

11.63

Weight (kDa)

9.84

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 146
AciI CCGC 3 cut(s) 24, 93, 267
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 94
AdeI CACNNNGTG 1 cut(s) 208
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 77, 78
AgeI ACCGGT 1 cut(s) 149
AgsI TTSAA 2 cut(s) 170, 217
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 2 cut(s) 30, 337
AluI AGCT 2 cut(s) 30, 337
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 1 cut(s) 68
AoxI GGCC 3 cut(s) 3, 94, 163
ApeKI GCWGC 1 cut(s) 35
AsiGI ACCGGT 1 cut(s) 149
AspLEI GCGC 1 cut(s) 49
AsuC2I CCSGG 2 cut(s) 78, 191
AsuHPI GGTGA 2 cut(s) 13, 220
AsuNHI GCTAGC 1 cut(s) 26
BarI GAAGNNNNNNTAC 2 cut(s) 124, 156
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 178
BcnI CCSGG 2 cut(s) 78, 191
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 3 cut(s) 27, 246, 315
BglI GCCNNNNNGGC 1 cut(s) 171
BisI GCNGC 3 cut(s) 36, 94, 267
BlsI GCNGC 3 cut(s) 37, 95, 268
Bme1390I CCNGG 2 cut(s) 78, 191
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 2 cut(s) 78, 191
BmsI GCATC 1 cut(s) 4
BmtI GCTAGC 1 cut(s) 30
BpuMI CCSGG 2 cut(s) 78, 191
BsaBI GATNNNNATC 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 78
Bse118I RCCGGY 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 2 cut(s) 199, 203
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 77, 78
BseMI GCAATG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 3 cut(s) 5, 96, 165
BshTI ACCGGT 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 3 cut(s) 77, 150, 191
BslI CCNNNNNNNGG 2 cut(s) 77, 78
BsmAI GTCTC 1 cut(s) 114
BsnI GGCC 3 cut(s) 5, 96, 165
Bso31I GGTCTC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 73, 304
BspACI CCGC 3 cut(s) 24, 93, 267
BspANI GGCC 3 cut(s) 5, 96, 165
BspLI GGNNCC 1 cut(s) 175
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 2 cut(s) 73, 304
BstC8I GCNNGC 2 cut(s) 28, 51
BstF5I GGATG 2 cut(s) 199, 203
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 2 cut(s) 76, 307
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 2 cut(s) 73, 304
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 171, 324
BstSCI CCNGG 2 cut(s) 76, 189
BstV1I GCAGC 1 cut(s) 22
BsuRI GGCC 3 cut(s) 5, 96, 165
BtgZI GCGATG 1 cut(s) 224
BtsCI GGATG 2 cut(s) 199, 203
Cac8I GCNNGC 2 cut(s) 28, 51
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 149
Csp6I GTAC 1 cut(s) 187
CspAI ACCGGT 1 cut(s) 149
CviJI RGCY 8 cut(s) 5, 30, 96, 135, 165, 174, 256, 337
CviKI_1 RGCY 8 cut(s) 5, 30, 96, 135, 165, 174, 256, 337
CviQI GTAC 1 cut(s) 187
DpnI GATC 2 cut(s) 75, 306
DpnII GATC 2 cut(s) 73, 304
DraIII CACNNNGTG 1 cut(s) 208
EaeI YGGCCR 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 114
FblI GTMKAC 1 cut(s) 146
Fnu4HI GCNGC 3 cut(s) 36, 94, 267
FokI GGATG 2 cut(s) 206, 210
Fsp4HI GCNGC 3 cut(s) 36, 94, 267
FspBI CTAG 3 cut(s) 27, 246, 315
GlaI GCGC 1 cut(s) 48
GluI GCNGC 3 cut(s) 36, 94, 267
HaeIII GGCC 3 cut(s) 5, 96, 165
HapII CCGG 3 cut(s) 77, 150, 191
HhaI GCGC 1 cut(s) 49
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HincII GTYRAC 2 cut(s) 147, 155
HindII GTYRAC 2 cut(s) 147, 155
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 3 cut(s) 235, 276, 292
HpaII CCGG 3 cut(s) 77, 150, 191
HphI GGTGA 2 cut(s) 13, 220
Hpy166II GTNNAC 2 cut(s) 147, 155
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 2 cut(s) 147, 155
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 2 cut(s) 49, 176
HpyCH4IV ACGT 2 cut(s) 99, 143
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 171, 324
HpySE526I ACGT 2 cut(s) 99, 143
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 2 cut(s) 73, 304
LmnI GCTCC 2 cut(s) 73, 179
LpnPI CCDG 4 cut(s) 90, 163, 204, 300
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 4
MaeI CTAG 3 cut(s) 27, 246, 315
MaeII ACGT 2 cut(s) 99, 143
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 75, 306
MboI GATC 2 cut(s) 73, 304
MboII GAAGA 2 cut(s) 229, 232
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 1 cut(s) 84
MlyI GAGTC 1 cut(s) 270
MnlI CCTC 4 cut(s) 16, 53, 146, 189
MspI CCGG 3 cut(s) 77, 150, 191
MspR9I CCNGG 2 cut(s) 78, 191
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 171, 324
NciI CCSGG 2 cut(s) 78, 191
NdeII GATC 2 cut(s) 73, 304
NheI GCTAGC 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 235, 292
PinAI ACCGGT 1 cut(s) 149
PkrI GCNGC 3 cut(s) 37, 95, 268
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 175
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SalI GTCGAC 1 cut(s) 145
SatI GCNGC 3 cut(s) 36, 94, 267
Sau3AI GATC 2 cut(s) 73, 304
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 2 cut(s) 78, 191
SduI GDGCHC 1 cut(s) 70
SetI ASST 5 cut(s) 32, 64, 102, 146, 339
SfaNI GCATC 1 cut(s) 4
Sse9I AATT 1 cut(s) 84
SsiI CCGC 3 cut(s) 24, 93, 267
SspMI CTAG 3 cut(s) 27, 246, 315
StyD4I CCNGG 2 cut(s) 76, 189
TaiI ACGT 2 cut(s) 102, 146
TaqI TCGA 3 cut(s) 124, 138, 146
TaqII GACCGA 1 cut(s) 96
TasI AATT 1 cut(s) 84
TauI GCSGC 2 cut(s) 96, 269
TfiI GAWTC 2 cut(s) 235, 292
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 146
XspI CTAG 3 cut(s) 27, 246, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.