Rmu_sc0002358.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002358.1
OG0000169
Physical Location & Seq
Reverse (-)
3389 .. 4581
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002358.1_g000003.1.cds

Sequence Viewer

Length: 1122 bp
atggcatccattgacgttgtcactgctagttttgcggcctccttggccctccttgaaggaggtcaagctcacgacctaggaaatattggtagaggccatgtgcccaaatcctcccaatctttcctccttggaaaatccctcactcgcaggcttgtggactccgcaaccttaaagtctcatttcctccgaacatggatggtggaaagggattttagggtacaggaaagaaatgacaatcttttcttgttctcattcgaatcaaccagggaccggaataaggttctcagaggaggagtttggtgctttcatcgtgctactgtctatctggaggaatacgacgggcttctacctattgctgaggttccgataaaacatgttagtatctgggttagggttttgggtaatcctccactgtatgaagaacctgataactttattcttattgggaatctcttgggaggttttctggattatgataggaaagagtttcagaaaggaattattcgcatcctcttctcacatgatatctcaaaaactattctgcttgaatgcaagattttctggactacagggattgagcctgtattgaagtttcagtttgaacatctcaagggtaggtactctcaatgtggccttattactcattatggggccaagtgtaaggaacctaatgcgacaatctcttcttctagggttttgcacattggtggcttttcaacatctagaggatccttctctttctcaacccagagtagaggtgaattacctaagccttccgttgctttgctgaagaaaaagaaacctgttattcaaaggttaaagagatcgccatcaggcttggacccatctcgtgttaccgtgcaagacatggctgaggaggaagcaagagagcctgttatgctgttgtgcatgatggagactacggtttacaagaaaagaagcaggaatggaggttgtactccctccccaaagaagtttaaaacaattctgggtggtaagcttcttactcttcaagcagatgctcttggtttggttgaagctgacaatgaaagtgagtacggaattttgaagaagaaggtgggaaggcctcttgggaatatgaacaagaaccctcgcccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

373

Amino Acids

41.84

Weight (kDa)

9.63

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 35, 162
AclWI GGATC 2 cut(s) 723, 736
AcsI RAATTY 1 cut(s) 1062
AcuI CTGAAG 1 cut(s) 809
AfaI GTAC 4 cut(s) 219, 620, 958, 1058
AfiI CCNNNNNNNGG 2 cut(s) 270, 277
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 9 cut(s) 56, 548, 589, 602, 717, 812, 1013, 1037, 1069
AjnI CCWGG 1 cut(s) 263
AleI CACNNNNGTG 1 cut(s) 705
AluBI AGCT 3 cut(s) 68, 1000, 1040
AluI AGCT 3 cut(s) 68, 1000, 1040
Alw26I GTCTC 2 cut(s) 180, 911
AlwI GGATC 2 cut(s) 723, 736
AoxI GGCC 6 cut(s) 36, 45, 94, 631, 651, 1085
ApoI RAATTY 1 cut(s) 1062
AspA2I CCTAGG 1 cut(s) 76
AspS9I GGNCC 4 cut(s) 46, 268, 651, 841
AsuHPI GGTGA 1 cut(s) 770
AsuII TTCGAA 1 cut(s) 255
AvaII GGWCC 2 cut(s) 268, 841
AvrII CCTAGG 1 cut(s) 76
BaeGI GKGCMC 1 cut(s) 105
BamHI GGATCC 1 cut(s) 728
BauI CACGAG 1 cut(s) 849
BbvCI CCTCAGC 2 cut(s) 357, 873
BccI CCATC 4 cut(s) 190, 838, 853, 907
BciT130I CCWGG 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 180, 911
BfaI CTAG 4 cut(s) 27, 77, 690, 723
BfmI CTRYAG 1 cut(s) 567
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 1 cut(s) 36
BlnI CCTAGG 1 cut(s) 76
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 265
Bme18I GGWCC 2 cut(s) 268, 841
BmgT120I GGNCC 4 cut(s) 46, 268, 651, 841
BmiI GGNNCC 6 cut(s) 269, 363, 652, 666, 730, 843
BmrFI CCNGG 1 cut(s) 265
BmsI GCATC 3 cut(s) 14, 516, 1009
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 3 cut(s) 357, 768, 873
Bpu14I TTCGAA 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 593
BsaBI GATNNNNATC 1 cut(s) 829
BsaJI CCNNGG 4 cut(s) 42, 76, 127, 264
BsaWI WCCGGW 1 cut(s) 270
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 277
Bse8I GATNNNNATC 1 cut(s) 829
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 4 cut(s) 42, 76, 127, 264
BseGI GGATG 3 cut(s) 5, 201, 507
BseJI GATNNNNATC 1 cut(s) 829
BseLI CCNNNNNNNGG 2 cut(s) 270, 277
BseMII CTCAG 3 cut(s) 298, 348, 864
BseRI GAGGAG 3 cut(s) 303, 306, 890
BseSI GKGCMC 1 cut(s) 105
BshFI GGCC 6 cut(s) 38, 47, 96, 633, 653, 1087
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 270, 277
BsmAI GTCTC 2 cut(s) 180, 911
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 6 cut(s) 38, 47, 96, 633, 653, 1087
Bsp119I TTCGAA 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 728, 824
BspACI CCGC 2 cut(s) 35, 162
BspANI GGCC 6 cut(s) 38, 47, 96, 633, 653, 1087
BspCNI CTCAG 3 cut(s) 297, 349, 865
BspLI GGNNCC 6 cut(s) 269, 363, 652, 666, 730, 843
BspPI GGATC 2 cut(s) 723, 736
BspT104I TTCGAA 1 cut(s) 255
BssECI CCNNGG 4 cut(s) 42, 76, 127, 264
BssMI GATC 2 cut(s) 728, 824
BssSI CACGAG 1 cut(s) 849
BssT1I CCWWGG 3 cut(s) 42, 76, 127
Bst2BI CACGAG 1 cut(s) 849
Bst2UI CCWGG 1 cut(s) 265
Bst4CI ACNGT 4 cut(s) 319, 414, 859, 925
Bst6I CTCTTC 3 cut(s) 518, 688, 1014
BstBI TTCGAA 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 4 cut(s) 284, 357, 768, 873
BstF5I GGATG 3 cut(s) 5, 201, 507
BstKTI GATC 2 cut(s) 731, 827
BstMAI GTCTC 2 cut(s) 180, 911
BstMBI GATC 2 cut(s) 728, 824
BstMWI GCNNNNNNNGC 3 cut(s) 32, 44, 898
BstNI CCWGG 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 263
BstSFI CTRYAG 1 cut(s) 567
BstSLI GKGCMC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 728
BstYI RGATCY 1 cut(s) 728
BsuRI GGCC 6 cut(s) 38, 47, 96, 633, 653, 1087
BtsCI GGATG 3 cut(s) 5, 201, 507
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 21, 410
Cac8I GCNNGC 1 cut(s) 149
Cfr13I GGNCC 4 cut(s) 46, 268, 651, 841
Csp6I GTAC 4 cut(s) 218, 619, 957, 1057
CviAII CATG 6 cut(s) 98, 192, 374, 521, 868, 910
CviQI GTAC 4 cut(s) 218, 619, 957, 1057
DdeI CTNAG 4 cut(s) 284, 357, 768, 873
DpnI GATC 2 cut(s) 730, 826
DpnII GATC 2 cut(s) 728, 824
DraI TTTAAA 1 cut(s) 979
Eam1104I CTCTTC 3 cut(s) 518, 688, 1014
EarI CTCTTC 3 cut(s) 518, 688, 1014
Eco130I CCWWGG 3 cut(s) 42, 76, 127
Eco147I AGGCCT 1 cut(s) 1087
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 2 cut(s) 268, 841
Eco57I CTGAAG 1 cut(s) 809
EcoRII CCWGG 1 cut(s) 263
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 3 cut(s) 42, 76, 127
ErhI CCWWGG 3 cut(s) 42, 76, 127
FaeI CATG 6 cut(s) 101, 195, 377, 524, 871, 913
FaqI GGGAC 1 cut(s) 281
FatI CATG 6 cut(s) 97, 191, 373, 520, 867, 909
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 208, 494
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 4 cut(s) 27, 77, 690, 723
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 6 cut(s) 38, 47, 96, 633, 653, 1087
HapII CCGG 1 cut(s) 271
Hin1II CATG 6 cut(s) 101, 195, 377, 524, 871, 913
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 3 cut(s) 158, 257, 448
HpaII CCGG 1 cut(s) 271
HphI GGTGA 1 cut(s) 770
Hpy166II GTNNAC 2 cut(s) 157, 928
Hpy188I TCNGA 4 cut(s) 188, 287, 366, 492
Hpy188III TCNNGA 5 cut(s) 71, 326, 467, 562, 723
Hpy8I GTNNAC 2 cut(s) 157, 928
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 5 cut(s) 50, 742, 783, 1069, 1077
HpyCH4III ACNGT 4 cut(s) 319, 414, 859, 925
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 552, 700, 862, 909
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 44, 898
HpyF3I CTNAG 4 cut(s) 284, 357, 768, 873
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 6 cut(s) 101, 195, 377, 524, 871, 913
Kzo9I GATC 2 cut(s) 728, 824
LweI GCATC 3 cut(s) 14, 516, 1009
MaeI CTAG 4 cut(s) 27, 77, 690, 723
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 19, 853
MalI GATC 2 cut(s) 730, 826
MboI GATC 2 cut(s) 728, 824
MboII GAAGA 8 cut(s) 431, 505, 675, 678, 802, 1001, 1081, 1084
MflI RGATCY 1 cut(s) 728
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 4 cut(s) 498, 761, 984, 1062
MlyI GAGTC 1 cut(s) 152
MseI TTAA 3 cut(s) 170, 818, 978
MslI CAYNNNNRTG 1 cut(s) 705
MspI CCGG 1 cut(s) 271
MspR9I CCNGG 1 cut(s) 265
Mva1269I GAATGC 1 cut(s) 554
MvaI CCWGG 1 cut(s) 265
MwoI GCNNNNNNNGC 3 cut(s) 32, 44, 898
NdeII GATC 2 cut(s) 728, 824
NlaIII CATG 6 cut(s) 101, 195, 377, 524, 871, 913
NlaIV GGNNCC 6 cut(s) 269, 363, 652, 666, 730, 843
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 377
NspV TTCGAA 1 cut(s) 255
OliI CACNNNNGTG 1 cut(s) 705
PceI AGGCCT 1 cut(s) 1087
PciI ACATGT 1 cut(s) 373
PctI GAATGC 1 cut(s) 554
PfeI GAWTC 2 cut(s) 257, 448
PflFI GACNNNGTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PscI ACATGT 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 263
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 6 cut(s) 269, 363, 652, 666, 730, 843
PspPI GGNCC 4 cut(s) 46, 268, 651, 841
PsuI RGATCY 1 cut(s) 728
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 4 cut(s) 219, 620, 958, 1058
RsaNI GTAC 4 cut(s) 218, 619, 957, 1057
RseI CAYNNNNRTG 1 cut(s) 705
SaqAI TTAA 3 cut(s) 170, 818, 978
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 728, 824
Sau96I GGNCC 4 cut(s) 46, 268, 651, 841
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 265
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 3 cut(s) 14, 516, 1009
SfcI CTRYAG 1 cut(s) 567
SfiI GGCCNNNNNGGCC 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 255
SinI GGWCC 2 cut(s) 268, 841
SmiMI CAYNNNNRTG 1 cut(s) 705
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 4 cut(s) 498, 761, 984, 1062
SseBI AGGCCT 1 cut(s) 1087
SsiI CCGC 2 cut(s) 35, 162
SspI AATATT 1 cut(s) 85
SspMI CTAG 4 cut(s) 27, 77, 690, 723
StuI AGGCCT 1 cut(s) 1087
StyD4I CCNGG 1 cut(s) 263
StyI CCWWGG 3 cut(s) 42, 76, 127
TaaI ACNGT 4 cut(s) 319, 414, 859, 925
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 255
TasI AATT 4 cut(s) 498, 761, 984, 1062
TatI WGTACW 1 cut(s) 956
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 2 cut(s) 257, 448
Tru1I TTAA 3 cut(s) 170, 818, 978
Tru9I TTAA 3 cut(s) 170, 818, 978
TscAI CASTG 2 cut(s) 28, 417
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 4 cut(s) 296, 432, 1062, 1115
TspGWI ACGGA 2 cut(s) 766, 1074
TspRI CASTG 2 cut(s) 28, 417
Tth111I GACNNNGTC 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 268, 841
XapI RAATTY 1 cut(s) 1062
XbaI TCTAGA 1 cut(s) 722
XceI RCATGY 1 cut(s) 377
XmaJI CCTAGG 1 cut(s) 76
XspI CTAG 4 cut(s) 27, 77, 690, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.