Rroxscaffold_2G00088790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000169
Physical Location & Seq
Forward (+)
10701310 .. 10718179
16870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088790.1

Sequence Viewer

Length: 882 bp
ATGGCGGCCATGTTCGTCGGTCTTTCAAATCTTTTTCGATTGGGAAGCCTCGACCCGCTAATCGGTCAACCCTGCGACCTTCAACGCTCACTTCCTTCGTACCTGGTTGGATGTCACTCGGTGATGTTGAAGAAGTTGGGCAAGTTACTTGGGAGTATGAACAAGAATCATCGCCGTAGCAAGAAGCCGAATGTCGCTACTTTACGACTCTCTTACCCTACAGTTATTGGTATTGATCCTAACCCTAGCGACAAGGACATAAATTATGGGAGATCAATTCTCTTCCTTGTGAGTTCTGATGATGACCTGGTTGAGTGTGATTACAGAAGTGATAGACTGATAGGGGTGCTAGAACTTAGCATTAAGGGTCGTCAATGGGTTGGGCTGGACTTTATTATAAATTTCAAGATCCAAGACCGTTCATATAAACCGGGACTTGCAGGCTTTTTCAGTCTAATAACCCTCGTTTATCCGGGAGTAATTGACGTTGCTATTAAACGTTGCCTATTTGTATACATCATGTACTCCTATATAAACCCCTCATGCGAGCGAATTGACACTGAAAAACTAAACACATATGAGGCGGTGATCATTGATCGGAAACTTTGTCTCTCATTGCTGTTGGTCGAGTTTGGACTAGAACGTCGGACTGATCGAATGGACAAAGGGTATTTGGGTCAAGAAAGCACAAGAGGCACATGGGCTTCATGCGTGCCCATCACCATCACCATCACCTCCCCAGAACACTCCCAAAGAGCCACTATCCAACTCCACATCCGCCCACATGTCCCTCTCCTCCATATCATATCAGATCCATTATCCTCCGAAAGATCCGTTTTACCAATAACAGTTTATTCGATTATAGTGATGTTTTACTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.12

Weight (kDa)

8.89

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 398
AasI GACNNNNNNGTC 1 cut(s) 642
AccI GTMKAC 1 cut(s) 513
AciI CCGC 4 cut(s) 5, 56, 584, 778
AclI AACGTT 1 cut(s) 499
AclWI GGATC 4 cut(s) 230, 403, 806, 825
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 400
AdeI CACNNNGTG 1 cut(s) 121
AfaI GTAC 2 cut(s) 101, 524
AfiI CCNNNNNNNGG 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 784
AgsI TTSAA 4 cut(s) 27, 83, 130, 406
AjnI CCWGG 2 cut(s) 102, 306
Alw26I GTCTC 1 cut(s) 614
AlwI GGATC 4 cut(s) 230, 403, 806, 825
AoxI GGCC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 400
AsuC2I CCSGG 2 cut(s) 432, 474
AsuHPI GGTGA 5 cut(s) 133, 598, 712, 718, 724
BaeGI GKGCMC 1 cut(s) 717
BccI CCATC 3 cut(s) 725, 731, 737
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 2 cut(s) 104, 308
BclI TGATCA 1 cut(s) 588
BcnI CCSGG 2 cut(s) 432, 474
BcoDI GTCTC 1 cut(s) 614
BfaI CTAG 3 cut(s) 246, 350, 638
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 4 cut(s) 104, 308, 432, 474
BmrFI CCNGG 4 cut(s) 104, 308, 432, 474
BpuMI CCSGG 2 cut(s) 432, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse3DI GCAATG 1 cut(s) 614
BseBI CCWGG 2 cut(s) 104, 308
BseGI GGATG 2 cut(s) 116, 774
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 614
BseRI GAGGAG 1 cut(s) 785
BseSI GKGCMC 1 cut(s) 717
BshFI GGCC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 431, 473
BslFI GGGAC 2 cut(s) 447, 773
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 614
BsmFI GGGAC 2 cut(s) 447, 773
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 717
Bsp143I GATC 8 cut(s) 235, 272, 408, 588, 595, 652, 811, 830
BspACI CCGC 4 cut(s) 5, 56, 584, 778
BspANI GGCC 1 cut(s) 8
BspPI GGATC 4 cut(s) 230, 403, 806, 825
BsrDI GCAATG 1 cut(s) 614
BssMI GATC 8 cut(s) 235, 272, 408, 588, 595, 652, 811, 830
BssNAI GTATAC 1 cut(s) 514
Bst1107I GTATAC 1 cut(s) 514
Bst2UI CCWGG 2 cut(s) 104, 308
Bst4CI ACNGT 3 cut(s) 223, 419, 850
Bst6I CTCTTC 1 cut(s) 287
BstC8I GCNNGC 3 cut(s) 442, 548, 713
BstDEI CTNAG 1 cut(s) 356
BstF5I GGATG 2 cut(s) 116, 774
BstKTI GATC 8 cut(s) 238, 275, 411, 591, 598, 655, 814, 833
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 8 cut(s) 235, 272, 408, 588, 595, 652, 811, 830
BstMWI GCNNNNNNNGC 1 cut(s) 693
BstNI CCWGG 2 cut(s) 104, 308
BstNSI RCATGY 1 cut(s) 788
BstSCI CCNGG 4 cut(s) 102, 306, 430, 472
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 717
BstX2I RGATCY 3 cut(s) 408, 811, 830
BstYI RGATCY 3 cut(s) 408, 811, 830
BstZ17I GTATAC 1 cut(s) 514
BsuRI GGCC 1 cut(s) 8
BtgZI GCGATG 1 cut(s) 155
BtsCI GGATG 2 cut(s) 116, 774
BtsIMutI CAGTG 1 cut(s) 558
Cac8I GCNNGC 3 cut(s) 442, 548, 713
CsiI ACCWGGT 2 cut(s) 102, 306
Csp6I GTAC 2 cut(s) 100, 523
CviAII CATG 6 cut(s) 10, 520, 543, 699, 708, 785
CviJI RGCY 7 cut(s) 8, 48, 187, 385, 444, 704, 758
CviKI_1 RGCY 7 cut(s) 8, 48, 187, 385, 444, 704, 758
CviQI GTAC 2 cut(s) 100, 523
DdeI CTNAG 1 cut(s) 356
DpnI GATC 8 cut(s) 237, 274, 410, 590, 597, 654, 813, 832
DpnII GATC 8 cut(s) 235, 272, 408, 588, 595, 652, 811, 830
DraIII CACNNNGTG 1 cut(s) 121
DrdI GACNNNNNNGTC 1 cut(s) 642
DseDI GACNNNNNNGTC 1 cut(s) 642
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
EciI GGCGGA 1 cut(s) 767
EcoRII CCWGG 2 cut(s) 102, 306
FaeI CATG 6 cut(s) 13, 523, 546, 702, 711, 788
FaqI GGGAC 2 cut(s) 447, 773
FatI CATG 6 cut(s) 9, 519, 542, 698, 707, 784
FauI CCCGC 1 cut(s) 63
FauNDI CATATG 1 cut(s) 577
FbaI TGATCA 1 cut(s) 588
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 123, 761
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 3 cut(s) 246, 350, 638
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 8
HapII CCGG 2 cut(s) 431, 473
Hin1II CATG 6 cut(s) 13, 523, 546, 702, 711, 788
HincII GTYRAC 1 cut(s) 68
HindII GTYRAC 1 cut(s) 68
HinfI GANTC 2 cut(s) 166, 207
HpaII CCGG 2 cut(s) 431, 473
HphI GGTGA 5 cut(s) 133, 598, 712, 718, 724
Hpy166II GTNNAC 2 cut(s) 68, 514
Hpy188I TCNGA 5 cut(s) 298, 600, 648, 811, 826
Hpy188III TCNNGA 2 cut(s) 406, 680
Hpy8I GTNNAC 2 cut(s) 68, 514
Hpy99I CGWCG 2 cut(s) 20, 648
HpyAV CCTTC 2 cut(s) 89, 105
HpyCH4III ACNGT 3 cut(s) 223, 419, 850
HpyCH4IV ACGT 3 cut(s) 486, 499, 643
HpyCH4V TGCA 1 cut(s) 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 693
HpyF3I CTNAG 1 cut(s) 356
HpySE526I ACGT 3 cut(s) 486, 499, 643
Hsp92II CATG 6 cut(s) 13, 523, 546, 702, 711, 788
Ksp22I TGATCA 1 cut(s) 588
Kzo9I GATC 8 cut(s) 235, 272, 408, 588, 595, 652, 811, 830
MabI ACCWGGT 2 cut(s) 102, 306
MaeI CTAG 3 cut(s) 246, 350, 638
MaeII ACGT 3 cut(s) 486, 499, 643
MaeIII GTNAC 2 cut(s) 113, 144
MalI GATC 8 cut(s) 237, 274, 410, 590, 597, 654, 813, 832
MboI GATC 8 cut(s) 235, 272, 408, 588, 595, 652, 811, 830
MboII GAAGA 2 cut(s) 142, 274
MflI RGATCY 3 cut(s) 408, 811, 830
MhlI GDGCHC 1 cut(s) 717
MluCI AATT 5 cut(s) 262, 276, 400, 480, 552
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 3 cut(s) 88, 626, 790
MnlI CCTC 9 cut(s) 59, 473, 550, 574, 686, 745, 801, 806, 832
MseI TTAA 2 cut(s) 363, 495
MspI CCGG 2 cut(s) 431, 473
MspR9I CCNGG 4 cut(s) 104, 308, 432, 474
MvaI CCWGG 2 cut(s) 104, 308
MwoI GCNNNNNNNGC 1 cut(s) 693
NciI CCSGG 2 cut(s) 432, 474
NdeI CATATG 1 cut(s) 577
NdeII GATC 8 cut(s) 235, 272, 408, 588, 595, 652, 811, 830
NlaIII CATG 6 cut(s) 13, 523, 546, 702, 711, 788
NmuCI GTSAC 1 cut(s) 113
NspI RCATGY 1 cut(s) 788
PciI ACATGT 1 cut(s) 784
PcsI WCGNNNNNNNCGW 1 cut(s) 652
PfeI GAWTC 1 cut(s) 166
PfoI TCCNGGA 1 cut(s) 472
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PscI ACATGT 1 cut(s) 784
PsiI TTATAA 1 cut(s) 398
Psp1406I AACGTT 1 cut(s) 499
Psp6I CCWGG 2 cut(s) 102, 306
PspGI CCWGG 2 cut(s) 102, 306
PsuI RGATCY 3 cut(s) 408, 811, 830
RsaI GTAC 2 cut(s) 101, 524
RsaNI GTAC 2 cut(s) 100, 523
SaqAI TTAA 2 cut(s) 363, 495
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 8 cut(s) 235, 272, 408, 588, 595, 652, 811, 830
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 4 cut(s) 104, 308, 432, 474
SduI GDGCHC 1 cut(s) 717
SetI ASST 7 cut(s) 81, 105, 309, 489, 502, 646, 737
SexAI ACCWGGT 2 cut(s) 102, 306
SfcI CTRYAG 1 cut(s) 219
Sse9I AATT 5 cut(s) 262, 276, 400, 480, 552
SsiI CCGC 4 cut(s) 5, 56, 584, 778
SspMI CTAG 3 cut(s) 246, 350, 638
StyD4I CCNGG 4 cut(s) 102, 306, 430, 472
TaaI ACNGT 3 cut(s) 223, 419, 850
TaiI ACGT 3 cut(s) 489, 502, 646
TaqI TCGA 5 cut(s) 37, 51, 627, 655, 857
TaqII GACCGA 2 cut(s) 8, 53
TasI AATT 5 cut(s) 262, 276, 400, 480, 552
TatI WGTACW 1 cut(s) 522
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 2 cut(s) 363, 495
Tru9I TTAA 2 cut(s) 363, 495
TscAI CASTG 1 cut(s) 565
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 173, 411, 696
TspGWI ACGGA 1 cut(s) 823
TspRI CASTG 1 cut(s) 565
XapI RAATTY 1 cut(s) 400
XceI RCATGY 1 cut(s) 788
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 3 cut(s) 246, 350, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.