Rorug02G0411500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000169
Physical Location & Seq
Reverse (-)
52749585 .. 52751449
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0411500.1

Sequence Viewer

Length: 417 bp
ATGCTCTGCACTTCGCTCCTCGCAGCTCATCGTGATCAAGAGTTTGTCTGTGATGGCAAAGACGACTCTTCCAGTGGTGAGGAAAACACAGAGACCCAGCAAAGCTTCGTAGAGAGGAAGCATCAGTTTCCTGGAATGGAGTTGATCGTTCGAGAATTTTCATTTCATCAGCTGAATGCCAATTTCCTCTGGCCGGGGACATTTGCATTTGCAGAATGGTTAATTCAAAACAGGCCATTGATTGAGGGACGACATTGTATTGAACTGGCCAGTTCGACTGATTTCTCAGGAAAACCTTTGCAAAGATATGGCCCCTGTGTTCGCAAATTCAATCAAGCTCCAACTTCAATGGGGAAACAAGAGGCATCCGTAAGTGTTGAATTTATCATGAAGATCCAAGTAAAGCTGTTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.8

Weight (kDa)

5.79

Isoelectric Point (pI)

35.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 388
AcoI YGGCCR 2 cut(s) 191, 267
AcsI RAATTY 3 cut(s) 155, 326, 380
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 5 cut(s) 227, 263, 331, 348, 380
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 5 cut(s) 26, 105, 172, 338, 406
AluI AGCT 5 cut(s) 26, 105, 172, 338, 406
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 388
AoxI GGCC 4 cut(s) 191, 233, 267, 310
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 3 cut(s) 155, 326, 380
AspS9I GGNCC 1 cut(s) 311
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 89
BalI TGGCCA 1 cut(s) 269
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 132
BclI TGATCA 1 cut(s) 34
BcnI CCSGG 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 86
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 2 cut(s) 132, 195
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 2 cut(s) 132, 195
BmsI GCATC 2 cut(s) 130, 374
BpuMI CCSGG 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 3 cut(s) 72, 270, 270
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 365
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 3 cut(s) 72, 270, 270
BseRI GAGGAG 1 cut(s) 8
BseXI GCAGC 1 cut(s) 35
BseYI CCCAGC 1 cut(s) 96
BshFI GGCC 4 cut(s) 193, 235, 269, 312
BsiSI CCGG 1 cut(s) 194
BslFI GGGAC 2 cut(s) 211, 261
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 2 cut(s) 211, 261
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 4 cut(s) 193, 235, 269, 312
Bso31I GGTCTC 1 cut(s) 86
Bsp143I GATC 3 cut(s) 34, 144, 393
BspANI GGCC 4 cut(s) 193, 235, 269, 312
BspCNI CTCAG 1 cut(s) 299
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 313
BspPI GGATC 1 cut(s) 388
BspTNI GGTCTC 1 cut(s) 86
BsrI ACTGG 3 cut(s) 72, 270, 270
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 3 cut(s) 34, 144, 393
Bst2UI CCWGG 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 286
BstF5I GGATG 1 cut(s) 365
BstKTI GATC 3 cut(s) 37, 147, 396
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 3 cut(s) 34, 144, 393
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 130, 193
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 393
BstYI RGATCY 1 cut(s) 393
BsuRI GGCC 4 cut(s) 193, 235, 269, 312
BtsCI GGATG 1 cut(s) 365
BtsIMutI CAGTG 1 cut(s) 79
CciI TCATGA 1 cut(s) 387
Cfr13I GGNCC 1 cut(s) 311
CviAII CATG 1 cut(s) 388
CviJI RGCY 9 cut(s) 26, 105, 172, 193, 235, 269, 312, 338, 406
CviKI_1 RGCY 9 cut(s) 26, 105, 172, 193, 235, 269, 312, 338, 406
DdeI CTNAG 1 cut(s) 286
DpnI GATC 3 cut(s) 36, 146, 395
DpnII GATC 3 cut(s) 34, 144, 393
EaeI YGGCCR 2 cut(s) 191, 267
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 391
FaiI YATR 2 cut(s) 309, 389
FalI AAGNNNNNCTT 1 cut(s) 395
FaqI GGGAC 2 cut(s) 211, 261
FatI CATG 1 cut(s) 387
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 24
GsaI CCCAGC 1 cut(s) 100
HaeIII GGCC 4 cut(s) 193, 235, 269, 312
HapII CCGG 1 cut(s) 194
Hin1II CATG 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 103
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 194
HphI GGTGA 1 cut(s) 89
Hpy188III TCNNGA 5 cut(s) 32, 38, 152, 288, 388
HpyCH4V TGCA 4 cut(s) 9, 206, 212, 301
HpyF3I CTNAG 1 cut(s) 286
Hsp92II CATG 1 cut(s) 391
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 3 cut(s) 34, 144, 393
LmnI GCTCC 2 cut(s) 21, 343
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 2 cut(s) 130, 374
MalI GATC 3 cut(s) 36, 146, 395
MboI GATC 3 cut(s) 34, 144, 393
MboII GAAGA 2 cut(s) 60, 403
MflI RGATCY 1 cut(s) 393
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 5 cut(s) 155, 181, 222, 326, 380
MluNI TGGCCA 1 cut(s) 269
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 6 cut(s) 29, 73, 108, 197, 238, 355
Mox20I TGGCCA 1 cut(s) 269
MscI TGGCCA 1 cut(s) 269
MseI TTAA 2 cut(s) 221, 415
Msp20I TGGCCA 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 132, 195
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 1 cut(s) 132
NciI CCSGG 1 cut(s) 195
NdeII GATC 3 cut(s) 34, 144, 393
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 1 cut(s) 313
PagI TCATGA 1 cut(s) 387
PctI GAATGC 1 cut(s) 181
PfoI TCCNGGA 1 cut(s) 130
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 96
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 311
PsuI RGATCY 1 cut(s) 393
PvuII CAGCTG 1 cut(s) 172
SaqAI TTAA 2 cut(s) 221, 415
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 3 cut(s) 34, 144, 393
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 132, 195
SetI ASST 6 cut(s) 28, 107, 174, 298, 340, 408
SfaNI GCATC 2 cut(s) 130, 374
Sse9I AATT 5 cut(s) 155, 181, 222, 326, 380
StyD4I CCNGG 2 cut(s) 130, 193
TaqI TCGA 2 cut(s) 151, 275
TasI AATT 5 cut(s) 155, 181, 222, 326, 380
Tru1I TTAA 2 cut(s) 221, 415
Tru9I TTAA 2 cut(s) 221, 415
TscAI CASTG 1 cut(s) 79
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 3 cut(s) 150, 155, 404
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 1 cut(s) 79
XapI RAATTY 3 cut(s) 155, 326, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.