FvH4_7g07641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000169
Physical Location & Seq
Reverse (-)
7526487 .. 7528433
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07641.t1

Sequence Viewer

Length: 516 bp
ATGTTGTCACAGCAAGCTGCGGCCTCTTTGGCTTTGGCTGCCGGTGGGGTTGCTCCAGACCTCGACAAGATTGGGGGTGGCCCTGTTTGCCGGTTTTTGGGTATTCCTCCTTTATTCGAAGAACTAGACAACCTGAAATTGGTTGGCAACCTTCTTGGTGGATATGTCAACTATGACAAGGAGTTCTTGCGAGTCCCTCCACCTGGTTATGCTTTTACAACCAAAACCTCAGGCACCTTGGCAGAGGCTACTGCTACGCATCCAAAGCCGCTGGGTCCGATTTTGCAAGGAAGCTCATCTACTGGTGATGGTGGTGAAGAGCCATTGGTTACAGCTACCTCTGCTTTGGCTTCCCCTAACCTGGTAAGATCTACTATTTCCAGGAAGCGAGAGAGGCAAGGGCATTATACTCCTTCTCCTAAGAAACTCAAAACCATTCTTGGTGGAAAGGTTCATGTGCTGCATGTTGAATCTCTAGGGCTATCAGAGTCTGATCTTGACTCAACCCTGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

17.8

Weight (kDa)

6.91

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AciI CCGC 2 cut(s) 20, 269
AfiI CCNNNNNNNGG 4 cut(s) 97, 139, 203, 361
AgsI TTSAA 1 cut(s) 470
AjnI CCWGG 4 cut(s) 202, 360, 380, 507
AluBI AGCT 3 cut(s) 17, 294, 335
AluI AGCT 3 cut(s) 17, 294, 335
AlwNI CAGNNNCTG 1 cut(s) 491
AoxI GGCC 2 cut(s) 21, 79
ApeKI GCWGC 3 cut(s) 17, 38, 460
AspS9I GGNCC 2 cut(s) 80, 275
AsuHPI GGTGA 2 cut(s) 317, 326
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 275
AxyI CCTNAGG 1 cut(s) 229
BanI GGYRCC 1 cut(s) 233
BarI GAAGNNNNNNTAC 2 cut(s) 283, 315
BbvI GCAGC 3 cut(s) 4, 25, 447
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 4 cut(s) 204, 362, 382, 509
BfaI CTAG 2 cut(s) 125, 476
BglI GCCNNNNNGGC 1 cut(s) 29
BglII AGATCT 1 cut(s) 368
BisI GCNGC 5 cut(s) 18, 21, 39, 269, 461
BlsI GCNGC 5 cut(s) 19, 22, 40, 270, 462
Bme1390I CCNGG 4 cut(s) 204, 362, 382, 509
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 80, 275
BmiI GGNNCC 2 cut(s) 235, 276
BmrFI CCNGG 4 cut(s) 204, 362, 382, 509
BmsI GCATC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 237, 507
BsaXI ACNNNNNCTCC 2 cut(s) 400, 430
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 139, 203, 361
Bse118I RCCGGY 2 cut(s) 41, 90
Bse1I ACTGG 1 cut(s) 307
Bse21I CCTNAGG 1 cut(s) 229
BseBI CCWGG 4 cut(s) 204, 362, 382, 509
BseDI CCNNGG 2 cut(s) 237, 507
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 4 cut(s) 97, 139, 203, 361
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 307
BseXI GCAGC 3 cut(s) 4, 25, 447
BseYI CCCAGC 1 cut(s) 271
BshFI GGCC 2 cut(s) 23, 81
BshNI GGYRCC 1 cut(s) 233
BsiSI CCGG 2 cut(s) 42, 91
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 4 cut(s) 97, 139, 203, 361
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 2 cut(s) 23, 81
Bsp119I TTCGAA 1 cut(s) 117
Bsp143I GATC 2 cut(s) 368, 493
BspACI CCGC 2 cut(s) 20, 269
BspANI GGCC 2 cut(s) 23, 81
BspCNI CTCAG 1 cut(s) 242
BspLI GGNNCC 2 cut(s) 235, 276
BspQI GCTCTTC 1 cut(s) 312
BspT104I TTCGAA 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 233
BsrFI RCCGGY 2 cut(s) 41, 90
BsrI ACTGG 1 cut(s) 307
BssAI RCCGGY 2 cut(s) 41, 90
BssECI CCNNGG 2 cut(s) 237, 507
BssMI GATC 2 cut(s) 368, 493
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 4 cut(s) 204, 362, 382, 509
Bst6I CTCTTC 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 229, 420
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 371, 496
BstMBI GATC 2 cut(s) 368, 493
BstMWI GCNNNNNNNGC 6 cut(s) 29, 38, 87, 265, 341, 394
BstNI CCWGG 4 cut(s) 204, 362, 382, 509
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 4 cut(s) 202, 360, 380, 507
BstV1I GCAGC 3 cut(s) 4, 25, 447
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
Bsu36I CCTNAGG 1 cut(s) 229
BsuRI GGCC 2 cut(s) 23, 81
BtsCI GGATG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 15
CaiI CAGNNNCTG 1 cut(s) 491
Cfr10I RCCGGY 2 cut(s) 41, 90
Cfr13I GGNCC 2 cut(s) 80, 275
CsiI ACCWGGT 2 cut(s) 202, 360
CviAII CATG 2 cut(s) 455, 464
DdeI CTNAG 2 cut(s) 229, 420
DpnI GATC 2 cut(s) 370, 495
DpnII GATC 2 cut(s) 368, 493
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 275
Eco81I CCTNAGG 1 cut(s) 229
EcoRII CCWGG 4 cut(s) 202, 360, 380, 507
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 2 cut(s) 458, 467
FaiI YATR 6 cut(s) 165, 174, 210, 408, 456, 465
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FaqI GGGAC 1 cut(s) 179
FatI CATG 2 cut(s) 454, 463
Fnu4HI GCNGC 5 cut(s) 18, 21, 39, 269, 461
FokI GGATG 1 cut(s) 246
Fsp4HI GCNGC 5 cut(s) 18, 21, 39, 269, 461
FspBI CTAG 2 cut(s) 125, 476
GluI GCNGC 5 cut(s) 18, 21, 39, 269, 461
GsaI CCCAGC 1 cut(s) 275
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 23, 81
HapII CCGG 2 cut(s) 42, 91
Hin1II CATG 2 cut(s) 458, 467
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 4 cut(s) 192, 470, 488, 500
HpaII CCGG 2 cut(s) 42, 91
HphI GGTGA 2 cut(s) 317, 326
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 279, 487, 493
Hpy188III TCNNGA 2 cut(s) 56, 497
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 161, 423
HpyCH4V TGCA 2 cut(s) 286, 463
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 38, 87, 265, 341, 394
HpyF3I CTNAG 2 cut(s) 229, 420
Hsp92II CATG 2 cut(s) 458, 467
Kzo9I GATC 2 cut(s) 368, 493
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 3 cut(s) 4, 25, 447
LweI GCATC 1 cut(s) 268
MabI ACCWGGT 2 cut(s) 202, 360
MaeI CTAG 2 cut(s) 125, 476
MaeIII GTNAC 2 cut(s) 6, 328
MalI GATC 2 cut(s) 370, 495
MboI GATC 2 cut(s) 368, 493
MboII GAAGA 2 cut(s) 131, 329
MflI RGATCY 1 cut(s) 368
MluCI AATT 1 cut(s) 137
MlyI GAGTC 3 cut(s) 201, 494, 497
MnlI CCTC 8 cut(s) 34, 71, 117, 207, 238, 238, 349, 387
MspA1I CMGCKG 1 cut(s) 271
MspI CCGG 2 cut(s) 42, 91
MspR9I CCNGG 4 cut(s) 204, 362, 382, 509
MvaI CCWGG 4 cut(s) 204, 362, 382, 509
MwoI GCNNNNNNNGC 6 cut(s) 29, 38, 87, 265, 341, 394
NdeII GATC 2 cut(s) 368, 493
NlaIII CATG 2 cut(s) 458, 467
NlaIV GGNNCC 2 cut(s) 235, 276
NmuCI GTSAC 1 cut(s) 6
NspI RCATGY 1 cut(s) 467
NspV TTCGAA 1 cut(s) 117
PciSI GCTCTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 470
PfoI TCCNGGA 1 cut(s) 380
PkrI GCNGC 5 cut(s) 19, 22, 40, 270, 462
PleI GAGTC 3 cut(s) 200, 494, 496
PpsI GAGTC 3 cut(s) 200, 494, 496
Psp6I CCWGG 4 cut(s) 202, 360, 380, 507
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 4 cut(s) 202, 360, 380, 507
PspN4I GGNNCC 2 cut(s) 235, 276
PspPI GGNCC 2 cut(s) 80, 275
PstNI CAGNNNCTG 1 cut(s) 491
PsuI RGATCY 1 cut(s) 368
SapI GCTCTTC 1 cut(s) 312
SatI GCNGC 5 cut(s) 18, 21, 39, 269, 461
Sau3AI GATC 2 cut(s) 368, 493
Sau96I GGNCC 2 cut(s) 80, 275
SchI GAGTC 3 cut(s) 201, 494, 497
ScrFI CCNGG 4 cut(s) 204, 362, 382, 509
SexAI ACCWGGT 2 cut(s) 202, 360
SfaNI GCATC 1 cut(s) 268
SfuI TTCGAA 1 cut(s) 117
SinI GGWCC 1 cut(s) 275
Sse9I AATT 1 cut(s) 137
SsiI CCGC 2 cut(s) 20, 269
SspMI CTAG 2 cut(s) 125, 476
StyD4I CCNGG 4 cut(s) 202, 360, 380, 507
StyI CCWWGG 1 cut(s) 237
TaqI TCGA 2 cut(s) 63, 117
TasI AATT 1 cut(s) 137
TauI GCSGC 2 cut(s) 23, 271
TfiI GAWTC 1 cut(s) 470
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 3 cut(s) 17, 38, 460
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 1 cut(s) 443
VpaK11BI GGWCC 1 cut(s) 275
XceI RCATGY 1 cut(s) 467
XspI CTAG 2 cut(s) 125, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.