Rmu_sc0003541.1_g000036

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003541.1
OG0000169
Physical Location & Seq
Forward (+)
179688 .. 181276
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003541.1_g000036.1.cds

Sequence Viewer

Length: 813 bp
atggtctccattgatgcggtaacagcgagctttgctgcctcgcttgctcttgctgaagggggtcgtgcccctgacttggggaagatcggcggaggtcctgtgcgcaagtcctcccaatcttttctcattggtaagcctttgactcggaaacctattgatccaaaggcattcatgtctcactttaatcaaacctggatggtggataaggagtttagggttcaggaacgggctggtgatctgttcttgttctcatttgcttctgcacgtgatcgtaacaaggttcttcaggggggagtctggtgctttgatcgagcccctgtctgttttgaagaagggctaaatactgaatatgatggtgttaagccattgcatgagattcagtttaagtatcttcggatctggactagggtttctggcataccgcctctgtataaagaacccgagaacctcactctgattggtaatcttttgggcggtttcttggactgcgacaagaaggagtttaagaaggggaacaagggagaccttctctctacttccccgaccattccaaagaagaagcggcctgtctttcgtcaactggagcgtccgagctcggattcttcttctcccacagatccggttccagcagtaaagaatcagaatgaactgccttctaagaaacgggagcgtagtggtgatagccatccttctcccaagaaattcaaaacaatcttggatggcaagattcctacactgcaggcggaggcacttggcctcattgaggaggatagtgacctcactttggtcactctgaaaaaagaagtctggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

270

Amino Acids

30.01

Weight (kDa)

9.3

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 104
AciI CCGC 6 cut(s) 17, 90, 422, 474, 562, 743
AclWI GGATC 3 cut(s) 152, 404, 611
AcsI RAATTY 1 cut(s) 701
AcuI CTGAAG 2 cut(s) 75, 269
AcvI CACGTG 1 cut(s) 266
AfiI CCNNNNNNNGG 4 cut(s) 76, 77, 763, 784
AgsI TTSAA 2 cut(s) 329, 706
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 2 cut(s) 30, 594
AluI AGCT 2 cut(s) 30, 594
Alw21I GWGCWC 1 cut(s) 596
Alw26I GTCTC 3 cut(s) 10, 180, 516
AlwI GGATC 3 cut(s) 152, 404, 611
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 2 cut(s) 563, 754
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 701
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 245, 689
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 70
BanII GRGCYC 2 cut(s) 316, 596
BbrPI CACGTG 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 596
BbvI GCAGC 1 cut(s) 22
BccI CCATC 4 cut(s) 190, 347, 693, 713
BciT130I CCWGG 1 cut(s) 193
BcoDI GTCTC 3 cut(s) 10, 180, 516
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 737
BisI GCNGC 2 cut(s) 36, 563
BlsI GCNGC 2 cut(s) 37, 564
Bme1390I CCNGG 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 624
BmrFI CCNGG 1 cut(s) 193
BmsI GCATC 1 cut(s) 4
BplI GAGNNNNNCTC 2 cut(s) 513, 545
BpmI CTGGAG 1 cut(s) 602
BsaAI YACGTR 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 684
BsaI GGTCTC 2 cut(s) 10, 516
BsaWI WCCGGW 1 cut(s) 619
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 77, 763, 784
Bse1I ACTGG 1 cut(s) 585
Bse3DI GCAATG 1 cut(s) 365
Bse8I GATNNNNATC 1 cut(s) 684
BseBI CCWGG 1 cut(s) 193
BseGI GGATG 3 cut(s) 201, 685, 724
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 4 cut(s) 76, 77, 763, 784
BseMI GCAATG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 585
BseRI GAGGAG 1 cut(s) 779
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 2 cut(s) 565, 756
BsiHKAI GWGCWC 1 cut(s) 596
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 1 cut(s) 620
BslI CCNNNNNNNGG 4 cut(s) 76, 77, 763, 784
BsmAI GTCTC 3 cut(s) 10, 180, 516
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 2 cut(s) 565, 756
Bso31I GGTCTC 2 cut(s) 10, 516
BsoBI CYCGRG 1 cut(s) 440
Bsp1286I GDGCHC 3 cut(s) 70, 316, 596
Bsp143I GATC 7 cut(s) 84, 157, 235, 268, 307, 396, 616
BspACI CCGC 6 cut(s) 17, 90, 422, 474, 562, 743
BspANI GGCC 2 cut(s) 565, 756
BspLI GGNNCC 1 cut(s) 624
BspMAI CTGCAG 1 cut(s) 741
BspPI GGATC 3 cut(s) 152, 404, 611
BspTNI GGTCTC 2 cut(s) 10, 516
BsrDI GCAATG 1 cut(s) 365
BsrI ACTGG 1 cut(s) 585
BssMI GATC 7 cut(s) 84, 157, 235, 268, 307, 396, 616
Bst2UI CCWGG 1 cut(s) 193
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 3 cut(s) 28, 45, 741
BstDEI CTNAG 1 cut(s) 657
BstENI CCTNNNNNAGG 1 cut(s) 761
BstF5I GGATG 3 cut(s) 201, 685, 724
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 7 cut(s) 87, 160, 238, 271, 310, 399, 619
BstMAI GTCTC 3 cut(s) 10, 180, 516
BstMBI GATC 7 cut(s) 84, 157, 235, 268, 307, 396, 616
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 44
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 737
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 2 cut(s) 396, 616
BstYI RGATCY 2 cut(s) 396, 616
BsuRI GGCC 2 cut(s) 565, 756
BtsCI GGATG 3 cut(s) 201, 685, 724
BtsI GCAGTG 1 cut(s) 734
BtsIMutI CAGTG 1 cut(s) 734
Cac8I GCNNGC 3 cut(s) 28, 45, 741
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 95
CseI GACGC 1 cut(s) 575
CviAII CATG 2 cut(s) 172, 371
DdeI CTNAG 1 cut(s) 657
DpnI GATC 7 cut(s) 86, 159, 237, 270, 309, 398, 618
DpnII GATC 7 cut(s) 84, 157, 235, 268, 307, 396, 616
EciI GGCGGA 2 cut(s) 105, 758
Ecl136II GAGCTC 1 cut(s) 594
Eco24I GRGCYC 2 cut(s) 316, 596
Eco31I GGTCTC 2 cut(s) 10, 516
Eco47I GGWCC 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 594
Eco57I CTGAAG 2 cut(s) 75, 269
Eco72I CACGTG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 440
EcoICRI GAGCTC 1 cut(s) 594
EcoNI CCTNNNNNAGG 1 cut(s) 761
EcoO109I RGGNCCY 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 191
EcoT38I GRGCYC 2 cut(s) 316, 596
FaeI CATG 2 cut(s) 175, 374
FaiI YATR 5 cut(s) 173, 351, 372, 419, 432
FatI CATG 2 cut(s) 171, 370
Fnu4HI GCNGC 2 cut(s) 36, 563
FokI GGATG 3 cut(s) 208, 672, 731
FriOI GRGCYC 2 cut(s) 316, 596
Fsp4HI GCNGC 2 cut(s) 36, 563
FspBI CTAG 1 cut(s) 405
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 1 cut(s) 104
GluI GCNGC 2 cut(s) 36, 563
GsuI CTGGAG 1 cut(s) 602
HaeIII GGCC 2 cut(s) 565, 756
HapII CCGG 1 cut(s) 620
HgaI GACGC 1 cut(s) 575
HhaI GCGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 175, 374
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 578
HindII GTYRAC 1 cut(s) 578
HinfI GANTC 6 cut(s) 142, 294, 376, 599, 637, 727
HpaII CCGG 1 cut(s) 620
HphI GGTGA 2 cut(s) 245, 689
Hpy166II GTNNAC 1 cut(s) 578
Hpy188I TCNGA 7 cut(s) 147, 396, 456, 591, 598, 642, 795
Hpy188III TCNNGA 2 cut(s) 221, 400
Hpy8I GTNNAC 1 cut(s) 578
HpyAV CCTTC 7 cut(s) 50, 326, 490, 502, 536, 663, 699
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 3 cut(s) 263, 370, 739
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 44
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 2 cut(s) 175, 374
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 7 cut(s) 84, 157, 235, 268, 307, 396, 616
LmnI GCTCC 2 cut(s) 583, 667
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 405
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 4 cut(s) 19, 272, 773, 787
MalI GATC 7 cut(s) 86, 159, 237, 270, 309, 398, 618
MboI GATC 7 cut(s) 84, 157, 235, 268, 307, 396, 616
MboII GAAGA 7 cut(s) 94, 275, 341, 383, 568, 594, 597
MflI RGATCY 2 cut(s) 396, 616
MhlI GDGCHC 3 cut(s) 70, 316, 596
MluCI AATT 1 cut(s) 701
MlyI GAGTC 2 cut(s) 136, 303
MseI TTAA 4 cut(s) 183, 360, 384, 504
MspI CCGG 1 cut(s) 620
MspR9I CCNGG 1 cut(s) 193
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 44
NdeII GATC 7 cut(s) 84, 157, 235, 268, 307, 396, 616
NlaIII CATG 2 cut(s) 175, 374
NlaIV GGNNCC 1 cut(s) 624
NmuCI GTSAC 2 cut(s) 773, 787
NsbI TGCGCA 1 cut(s) 104
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 4 cut(s) 376, 599, 637, 727
PkrI GCNGC 2 cut(s) 37, 564
PleI GAGTC 2 cut(s) 136, 302
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
PpsI GAGTC 2 cut(s) 136, 302
Ppu21I YACGTR 1 cut(s) 266
PpuMI RGGWCCY 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 596
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 191
PspCI CACGTG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 624
PspPI GGNCC 1 cut(s) 95
PspPPI RGGWCCY 1 cut(s) 95
PstI CTGCAG 1 cut(s) 741
PsuI RGATCY 2 cut(s) 396, 616
SacI GAGCTC 1 cut(s) 596
SaqAI TTAA 4 cut(s) 183, 360, 384, 504
SatI GCNGC 2 cut(s) 36, 563
Sau3AI GATC 7 cut(s) 84, 157, 235, 268, 307, 396, 616
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 2 cut(s) 136, 303
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 3 cut(s) 70, 316, 596
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 737
SinI GGWCC 1 cut(s) 95
Sse9I AATT 1 cut(s) 701
SsiI CCGC 6 cut(s) 17, 90, 422, 474, 562, 743
SspMI CTAG 1 cut(s) 405
SstI GAGCTC 1 cut(s) 596
StyD4I CCNGG 1 cut(s) 191
TaiI ACGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 310
TasI AATT 1 cut(s) 701
TauI GCSGC 1 cut(s) 565
TfiI GAWTC 4 cut(s) 376, 599, 637, 727
Tru1I TTAA 4 cut(s) 183, 360, 384, 504
Tru9I TTAA 4 cut(s) 183, 360, 384, 504
TscAI CASTG 1 cut(s) 741
TseFI GTSAC 2 cut(s) 773, 787
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 2 cut(s) 773, 787
TspDTI ATGAA 2 cut(s) 160, 660
TspRI CASTG 1 cut(s) 741
VpaK11BI GGWCC 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 761
XapI RAATTY 1 cut(s) 701
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.