Rmu_sc0010317.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010317.1
OG0000169
Physical Location & Seq
Reverse (-)
26548 .. 27818
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010317.1_g000011.1.cds

Sequence Viewer

Length: 948 bp
atggctaccattgatgccgtcactgctagctttgctgcctccttggctctggctgagggtggtaaagccctggaccttggaaagatgggtggagaccctgagtatgatggagtcctacctattgctaaggtttcgatgaaacatgttcgtatctgggttagggtttcgggcattccgccgctgtatgaggaacctgataattttactctcattgggaaccttctgggaggttttctgaattatgacaagaaagaattccagaaaggaattattcgcatattctttttgcatgatatctccaaacccattctccttgaacgcaggattttcttggcgacaggaaatgagcctttggtattgcacttcggcggcccctctactactgatggttctttctccttctcggcccaagctagttgtgagttacctttctcttctcctgctttaataaagaaaaagaagcctgtcattagaagaaaggaaggatcagtttctgggttagattcttctgctggtattgtgcaaactatggcagaggaagagatattacagccaacgacgaatatggatgaggtggtggtctcgggatcggcctccatggagggtgttctgaaatccattcctcctactgaagatgtgcaggtggaacctaaggtttacatgaagagaagcaggaatggaggctgtaccccctccccgaagaagtttaaaactatcctgaggggtaagcttcttactcttcaagtagatgctttgggtttggtggaaactgacaaagagagtgagcaaggcatcctgaagaagaaggttggcaggcctctggggagtaagaataagaatcctcgtcctcagaatatggtaggtaggacccctctgtgtcttacttacccttttattgaaactggtcaagagagtagccttatagagaagggcaaaggtaatctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

34.13

Weight (kDa)

9.06

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 631
Acc36I ACCTGC 1 cut(s) 631
AciI CCGC 3 cut(s) 176, 179, 369
AclWI GGATC 2 cut(s) 493, 595
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 2 cut(s) 651, 818
AfaI GTAC 1 cut(s) 688
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 3 cut(s) 317, 743, 899
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 3 cut(s) 30, 413, 730
AluI AGCT 3 cut(s) 30, 413, 730
Alw26I GTCTC 2 cut(s) 87, 586
AlwI GGATC 2 cut(s) 493, 595
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 583
AoxI GGCC 4 cut(s) 370, 405, 591, 815
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 254
AspS9I GGNCC 4 cut(s) 73, 371, 406, 867
AsuNHI GCTAGC 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 583
AvaII GGWCC 2 cut(s) 73, 867
AxyI CCTNAGG 2 cut(s) 651, 719
BarI GAAGNNNNNNTAC 2 cut(s) 531, 563
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 22
BccI CCATC 3 cut(s) 79, 101, 380
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 71
BcoDI GTCTC 2 cut(s) 87, 586
BfaI CTAG 2 cut(s) 27, 414
BfuAI ACCTGC 1 cut(s) 631
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 3 cut(s) 36, 179, 370
BlsI GCNGC 3 cut(s) 37, 180, 371
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 2 cut(s) 73, 867
BmeT110I CYCGRG 1 cut(s) 583
BmgT120I GGNCC 4 cut(s) 73, 371, 406, 867
BmiI GGNNCC 5 cut(s) 192, 218, 373, 648, 869
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 3 cut(s) 4, 739, 801
BmtI GCTAGC 1 cut(s) 30
Bpu10I CCTNAGC 2 cut(s) 54, 126
BsaI GGTCTC 2 cut(s) 87, 586
BsaJI CCNNGG 4 cut(s) 42, 69, 76, 597
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bse1I ACTGG 1 cut(s) 907
Bse21I CCTNAGG 2 cut(s) 651, 719
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 4 cut(s) 42, 69, 76, 597
BseGI GGATG 2 cut(s) 574, 792
BseMII CTCAG 4 cut(s) 45, 90, 710, 863
BseNI ACTGG 1 cut(s) 907
BseXI GCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 659
BshFI GGCC 4 cut(s) 372, 407, 593, 817
BsiHKCI CYCGRG 1 cut(s) 583
BsmAI GTCTC 2 cut(s) 87, 586
BsmI GAATGC 1 cut(s) 171
BsnI GGCC 4 cut(s) 372, 407, 593, 817
Bso31I GGTCTC 2 cut(s) 87, 586
BsoBI CYCGRG 1 cut(s) 583
Bsp143I GATC 2 cut(s) 485, 587
Bsp19I CCATGG 1 cut(s) 597
BspACI CCGC 3 cut(s) 176, 179, 369
BspANI GGCC 4 cut(s) 372, 407, 593, 817
BspCNI CTCAG 4 cut(s) 46, 91, 711, 862
BspLI GGNNCC 5 cut(s) 192, 218, 373, 648, 869
BspMI ACCTGC 1 cut(s) 631
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 2 cut(s) 493, 595
BspTNI GGTCTC 2 cut(s) 87, 586
BsrI ACTGG 1 cut(s) 907
BssECI CCNNGG 4 cut(s) 42, 69, 76, 597
BssMI GATC 2 cut(s) 485, 587
BssT1I CCWWGG 3 cut(s) 42, 76, 597
Bst2UI CCWGG 1 cut(s) 71
Bst6I CTCTTC 4 cut(s) 439, 534, 659, 744
BstC8I GCNNGC 2 cut(s) 28, 815
BstDEI CTNAG 6 cut(s) 54, 99, 126, 651, 719, 849
BstDSI CCRYGG 1 cut(s) 597
BstF5I GGATG 2 cut(s) 574, 792
BstKTI GATC 2 cut(s) 488, 590
BstMAI GTCTC 2 cut(s) 87, 586
BstMBI GATC 2 cut(s) 485, 587
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 44
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 22
Bsu36I CCTNAGG 2 cut(s) 651, 719
BsuRI GGCC 4 cut(s) 372, 407, 593, 817
BtgI CCRYGG 1 cut(s) 597
BtsCI GGATG 2 cut(s) 574, 792
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 2 cut(s) 28, 815
CaiI CAGNNNCTG 1 cut(s) 494
Cfr13I GGNCC 4 cut(s) 73, 371, 406, 867
Csp6I GTAC 1 cut(s) 687
CviAII CATG 4 cut(s) 143, 290, 598, 661
CviQI GTAC 1 cut(s) 687
DdeI CTNAG 6 cut(s) 54, 99, 126, 651, 719, 849
DpnI GATC 2 cut(s) 487, 589
DpnII GATC 2 cut(s) 485, 587
DraI TTTAAA 1 cut(s) 709
Eam1104I CTCTTC 4 cut(s) 439, 534, 659, 744
EarI CTCTTC 4 cut(s) 439, 534, 659, 744
EciI GGCGGA 1 cut(s) 165
Eco130I CCWWGG 3 cut(s) 42, 76, 597
Eco147I AGGCCT 1 cut(s) 817
Eco31I GGTCTC 2 cut(s) 87, 586
Eco32I GATATC 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 73, 867
Eco57I CTGAAG 2 cut(s) 651, 818
Eco81I CCTNAGG 2 cut(s) 651, 719
Eco88I CYCGRG 1 cut(s) 583
EcoO109I RGGNCCY 1 cut(s) 867
EcoRI GAATTC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 69
EcoRV GATATC 1 cut(s) 295
EcoT14I CCWWGG 3 cut(s) 42, 76, 597
ErhI CCWWGG 3 cut(s) 42, 76, 597
FaeI CATG 4 cut(s) 146, 293, 601, 664
FatI CATG 4 cut(s) 142, 289, 597, 660
Fnu4HI GCNGC 3 cut(s) 36, 179, 370
FokI GGATG 2 cut(s) 581, 779
Fsp4HI GCNGC 3 cut(s) 36, 179, 370
FspBI CTAG 2 cut(s) 27, 414
GluI GCNGC 3 cut(s) 36, 179, 370
HaeIII GGCC 4 cut(s) 372, 407, 593, 817
Hin1II CATG 4 cut(s) 146, 293, 601, 664
HindIII AAGCTT 1 cut(s) 728
HinfI GANTC 3 cut(s) 111, 503, 838
Hpy166II GTNNAC 1 cut(s) 658
Hpy188I TCNGA 3 cut(s) 237, 612, 852
Hpy188III TCNNGA 5 cut(s) 259, 585, 718, 796, 908
Hpy8I GTNNAC 1 cut(s) 658
Hpy99I CGWCG 1 cut(s) 562
HpyAV CCTTC 5 cut(s) 230, 409, 476, 799, 922
HpyCH4V TGCA 4 cut(s) 289, 361, 523, 640
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 44
HpyF3I CTNAG 6 cut(s) 54, 99, 126, 651, 719, 849
Hsp92II CATG 4 cut(s) 146, 293, 601, 664
Kzo9I GATC 2 cut(s) 485, 587
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 3 cut(s) 4, 739, 801
MaeI CTAG 2 cut(s) 27, 414
MaeIII GTNAC 2 cut(s) 19, 423
MalI GATC 2 cut(s) 487, 589
MboI GATC 2 cut(s) 485, 587
MluCI AATT 4 cut(s) 199, 238, 254, 267
MlyI GAGTC 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 2 cut(s) 446, 708
MspA1I CMGCKG 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 171
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 44
NcoI CCATGG 1 cut(s) 597
NdeII GATC 2 cut(s) 485, 587
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 4 cut(s) 146, 293, 601, 664
NlaIV GGNNCC 5 cut(s) 192, 218, 373, 648, 869
NmeAIII GCCGAG 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 146
PaqCI CACCTGC 1 cut(s) 631
PceI AGGCCT 1 cut(s) 817
PciI ACATGT 1 cut(s) 142
PctI GAATGC 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 503, 838
PkrI GCNGC 3 cut(s) 37, 180, 371
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PpuMI RGGWCCY 1 cut(s) 867
PscI ACATGT 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 867
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 5 cut(s) 192, 218, 373, 648, 869
PspPI GGNCC 4 cut(s) 73, 371, 406, 867
PspPPI RGGWCCY 1 cut(s) 867
PstNI CAGNNNCTG 1 cut(s) 494
RsaI GTAC 1 cut(s) 688
RsaNI GTAC 1 cut(s) 687
SaqAI TTAA 2 cut(s) 446, 708
SatI GCNGC 3 cut(s) 36, 179, 370
Sau3AI GATC 2 cut(s) 485, 587
Sau96I GGNCC 4 cut(s) 73, 371, 406, 867
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 71
SfaNI GCATC 3 cut(s) 4, 739, 801
SinI GGWCC 2 cut(s) 73, 867
Sse9I AATT 4 cut(s) 199, 238, 254, 267
SseBI AGGCCT 1 cut(s) 817
SsiI CCGC 3 cut(s) 176, 179, 369
SspMI CTAG 2 cut(s) 27, 414
StuI AGGCCT 1 cut(s) 817
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 3 cut(s) 42, 76, 597
TaqI TCGA 1 cut(s) 134
TasI AATT 4 cut(s) 199, 238, 254, 267
TauI GCSGC 2 cut(s) 181, 372
TfiI GAWTC 2 cut(s) 503, 838
Tru1I TTAA 2 cut(s) 446, 708
Tru9I TTAA 2 cut(s) 446, 708
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 152, 677
TspRI CASTG 1 cut(s) 28
VpaK11BI GGWCC 2 cut(s) 73, 867
XapI RAATTY 1 cut(s) 254
XceI RCATGY 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 2 cut(s) 27, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.