Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 880 |
| Acc36I | ACCTGC | 1 cut(s) | 880 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 64 |
| AciI | CCGC | 1 cut(s) | 931 |
| AclWI | GGATC | 3 cut(s) | 65, 87, 421 |
| AcsI | RAATTY | 3 cut(s) | 148, 401, 567 |
| AcuI | CTGAAG | 1 cut(s) | 660 |
| AdeI | CACNNNGTG | 1 cut(s) | 545 |
| AfaI | GTAC | 3 cut(s) | 103, 176, 194 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 733, 924 |
| AgeI | ACCGGT | 1 cut(s) | 451 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 743, 775 |
| AluBI | AGCT | 2 cut(s) | 64, 265 |
| AluI | AGCT | 2 cut(s) | 64, 265 |
| Alw26I | GTCTC | 2 cut(s) | 554, 601 |
| AlwI | GGATC | 3 cut(s) | 65, 87, 421 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 791 |
| AoxI | GGCC | 1 cut(s) | 633 |
| ApeKI | GCWGC | 1 cut(s) | 898 |
| ApoI | RAATTY | 3 cut(s) | 148, 401, 567 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 994, 1026 |
| AsiGI | ACCGGT | 1 cut(s) | 451 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 401, 498 |
| AspLEI | GCGC | 1 cut(s) | 741 |
| AspS9I | GGNCC | 2 cut(s) | 54, 928 |
| AsuC2I | CCSGG | 1 cut(s) | 233 |
| AsuHPI | GGTGA | 2 cut(s) | 315, 768 |
| AsuII | TTCGAA | 1 cut(s) | 1055 |
| AvaII | GGWCC | 2 cut(s) | 54, 928 |
| BanII | GRGCYC | 1 cut(s) | 585 |
| BbvI | GCAGC | 1 cut(s) | 910 |
| BccI | CCATC | 5 cut(s) | 103, 248, 707, 799, 980 |
| BclI | TGATCA | 1 cut(s) | 223 |
| BcnI | CCSGG | 1 cut(s) | 233 |
| BcoDI | GTCTC | 2 cut(s) | 554, 601 |
| BfaI | CTAG | 2 cut(s) | 731, 1099 |
| BfmI | CTRYAG | 2 cut(s) | 503, 780 |
| BfoI | RGCGCY | 1 cut(s) | 742 |
| BfuAI | ACCTGC | 1 cut(s) | 880 |
| BglII | AGATCT | 1 cut(s) | 1095 |
| BisI | GCNGC | 1 cut(s) | 899 |
| BlsI | GCNGC | 1 cut(s) | 900 |
| Bme1390I | CCNGG | 1 cut(s) | 233 |
| Bme18I | GGWCC | 2 cut(s) | 54, 928 |
| BmgT120I | GGNCC | 2 cut(s) | 54, 928 |
| BmiI | GGNNCC | 7 cut(s) | 56, 582, 646, 834, 846, 929, 990 |
| BmrFI | CCNGG | 1 cut(s) | 233 |
| BmsI | GCATC | 5 cut(s) | 4, 524, 529, 876, 997 |
| Bpu14I | TTCGAA | 1 cut(s) | 1055 |
| BpuMI | CCSGG | 1 cut(s) | 233 |
| BsaI | GGTCTC | 1 cut(s) | 554 |
| BsaJI | CCNNGG | 2 cut(s) | 50, 231 |
| BsaWI | WCCGGW | 1 cut(s) | 451 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 733, 924 |
| Bse118I | RCCGGY | 1 cut(s) | 451 |
| Bse1I | ACTGG | 2 cut(s) | 772, 1072 |
| Bse3DI | GCAATG | 1 cut(s) | 940 |
| BseDI | CCNNGG | 2 cut(s) | 50, 231 |
| BseGI | GGATG | 3 cut(s) | 114, 487, 699 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 733, 924 |
| BseMI | GCAATG | 1 cut(s) | 940 |
| BseMII | CTCAG | 1 cut(s) | 333 |
| BseNI | ACTGG | 2 cut(s) | 772, 1072 |
| BseRI | GAGGAG | 2 cut(s) | 593, 685 |
| BseXI | GCAGC | 1 cut(s) | 910 |
| BseYI | CCCAGC | 1 cut(s) | 143 |
| BsgI | GTGCAG | 1 cut(s) | 917 |
| BshFI | GGCC | 1 cut(s) | 635 |
| BshTI | ACCGGT | 1 cut(s) | 451 |
| BsiSI | CCGG | 2 cut(s) | 233, 452 |
| BslFI | GGGAC | 1 cut(s) | 941 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 733, 924 |
| BsmAI | GTCTC | 2 cut(s) | 554, 601 |
| BsmFI | GGGAC | 1 cut(s) | 941 |
| BsmI | GAATGC | 1 cut(s) | 913 |
| BsnI | GGCC | 1 cut(s) | 635 |
| Bso31I | GGTCTC | 1 cut(s) | 554 |
| Bsp119I | TTCGAA | 1 cut(s) | 1055 |
| Bsp1286I | GDGCHC | 1 cut(s) | 585 |
| Bsp143I | GATC | 9 cut(s) | 70, 79, 180, 223, 357, 413, 676, 826, 1095 |
| BspACI | CCGC | 1 cut(s) | 931 |
| BspANI | GGCC | 1 cut(s) | 635 |
| BspCNI | CTCAG | 1 cut(s) | 334 |
| BspHI | TCATGA | 1 cut(s) | 436 |
| BspLI | GGNNCC | 7 cut(s) | 56, 582, 646, 834, 846, 929, 990 |
| BspMAI | CTGCAG | 1 cut(s) | 507 |
| BspMI | ACCTGC | 1 cut(s) | 880 |
| BspPI | GGATC | 3 cut(s) | 65, 87, 421 |
| BspT104I | TTCGAA | 1 cut(s) | 1055 |
| BspTNI | GGTCTC | 1 cut(s) | 554 |
| BsrDI | GCAATG | 1 cut(s) | 940 |
| BsrFI | RCCGGY | 1 cut(s) | 451 |
| BsrI | ACTGG | 2 cut(s) | 772, 1072 |
| BssAI | RCCGGY | 1 cut(s) | 451 |
| BssECI | CCNNGG | 2 cut(s) | 50, 231 |
| BssMI | GATC | 9 cut(s) | 70, 79, 180, 223, 357, 413, 676, 826, 1095 |
| Bst4CI | ACNGT | 2 cut(s) | 270, 862 |
| Bst6I | CTCTTC | 2 cut(s) | 686, 1055 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 895 |
| BstBI | TTCGAA | 1 cut(s) | 1055 |
| BstC8I | GCNNGC | 1 cut(s) | 1073 |
| BstDEI | CTNAG | 4 cut(s) | 198, 342, 605, 663 |
| BstF5I | GGATG | 3 cut(s) | 114, 487, 699 |
| BstH2I | RGCGCY | 1 cut(s) | 742 |
| BstHHI | GCGC | 1 cut(s) | 741 |
| BstKTI | GATC | 9 cut(s) | 73, 82, 183, 226, 360, 416, 679, 829, 1098 |
| BstMAI | GTCTC | 2 cut(s) | 554, 601 |
| BstMBI | GATC | 9 cut(s) | 70, 79, 180, 223, 357, 413, 676, 826, 1095 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 895 |
| BstNSI | RCATGY | 3 cut(s) | 293, 563, 1075 |
| BstSCI | CCNGG | 1 cut(s) | 231 |
| BstSFI | CTRYAG | 2 cut(s) | 503, 780 |
| BstV1I | GCAGC | 1 cut(s) | 910 |
| BstX2I | RGATCY | 2 cut(s) | 79, 1095 |
| BstYI | RGATCY | 2 cut(s) | 79, 1095 |
| BsuRI | GGCC | 1 cut(s) | 635 |
| BtgZI | GCGATG | 1 cut(s) | 818 |
| BtsCI | GGATG | 3 cut(s) | 114, 487, 699 |
| BtsI | GCAGTG | 2 cut(s) | 684, 792 |
| BtsIMutI | CAGTG | 3 cut(s) | 684, 792, 858 |
| BveI | ACCTGC | 1 cut(s) | 880 |
| Cac8I | GCNNGC | 1 cut(s) | 1073 |
| CaiI | CAGNNNCTG | 1 cut(s) | 791 |
| CciI | TCATGA | 1 cut(s) | 436 |
| CfoI | GCGC | 1 cut(s) | 741 |
| Cfr10I | RCCGGY | 1 cut(s) | 451 |
| Cfr13I | GGNCC | 2 cut(s) | 54, 928 |
| Csp6I | GTAC | 3 cut(s) | 102, 175, 193 |
| CspAI | ACCGGT | 1 cut(s) | 451 |
| CviAII | CATG | 6 cut(s) | 178, 290, 437, 560, 812, 1072 |
| CviQI | GTAC | 3 cut(s) | 102, 175, 193 |
| DdeI | CTNAG | 4 cut(s) | 198, 342, 605, 663 |
| DpnI | GATC | 9 cut(s) | 72, 81, 182, 225, 359, 415, 678, 828, 1097 |
| DpnII | GATC | 9 cut(s) | 70, 79, 180, 223, 357, 413, 676, 826, 1095 |
| DraIII | CACNNNGTG | 1 cut(s) | 545 |
| Eam1104I | CTCTTC | 2 cut(s) | 686, 1055 |
| EarI | CTCTTC | 2 cut(s) | 686, 1055 |
| Eco24I | GRGCYC | 1 cut(s) | 585 |
| Eco31I | GGTCTC | 1 cut(s) | 554 |
| Eco32I | GATATC | 1 cut(s) | 442 |
| Eco47I | GGWCC | 2 cut(s) | 54, 928 |
| Eco57I | CTGAAG | 1 cut(s) | 660 |
| EcoRI | GAATTC | 1 cut(s) | 401 |
| EcoRV | GATATC | 1 cut(s) | 442 |
| EcoT38I | GRGCYC | 1 cut(s) | 585 |
| FaeI | CATG | 6 cut(s) | 181, 293, 440, 563, 815, 1075 |
| FaqI | GGGAC | 1 cut(s) | 941 |
| FatI | CATG | 6 cut(s) | 177, 289, 436, 559, 811, 1071 |
| FbaI | TGATCA | 1 cut(s) | 223 |
| Fnu4HI | GCNGC | 1 cut(s) | 899 |
| FokI | GGATG | 3 cut(s) | 121, 494, 686 |
| FriOI | GRGCYC | 1 cut(s) | 585 |
| Fsp4HI | GCNGC | 1 cut(s) | 899 |
| FspBI | CTAG | 2 cut(s) | 731, 1099 |
| GlaI | GCGC | 1 cut(s) | 740 |
| GluI | GCNGC | 1 cut(s) | 899 |
| GsaI | CCCAGC | 1 cut(s) | 147 |
| HaeII | RGCGCY | 1 cut(s) | 742 |
| HaeIII | GGCC | 1 cut(s) | 635 |
| HapII | CCGG | 2 cut(s) | 233, 452 |
| HhaI | GCGC | 1 cut(s) | 741 |
| Hin1II | CATG | 6 cut(s) | 181, 293, 440, 563, 815, 1075 |
| Hin6I | GCGC | 1 cut(s) | 739 |
| HinP1I | GCGC | 1 cut(s) | 739 |
| HinfI | GANTC | 5 cut(s) | 130, 169, 318, 797, 872 |
| HpaII | CCGG | 2 cut(s) | 233, 452 |
| HphI | GGTGA | 2 cut(s) | 315, 768 |
| Hpy166II | GTNNAC | 1 cut(s) | 238 |
| Hpy188I | TCNGA | 3 cut(s) | 54, 357, 640 |
| Hpy188III | TCNNGA | 8 cut(s) | 127, 134, 315, 406, 437, 479, 623, 836 |
| Hpy8I | GTNNAC | 1 cut(s) | 238 |
| HpyAV | CCTTC | 7 cut(s) | 391, 403, 635, 639, 658, 664, 960 |
| HpyCH4III | ACNGT | 2 cut(s) | 270, 862 |
| HpyCH4V | TGCA | 5 cut(s) | 505, 889, 898, 913, 945 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 895 |
| HpyF3I | CTNAG | 4 cut(s) | 198, 342, 605, 663 |
| Hsp92II | CATG | 6 cut(s) | 181, 293, 440, 563, 815, 1075 |
| HspAI | GCGC | 1 cut(s) | 739 |
| Ksp22I | TGATCA | 1 cut(s) | 223 |
| Kzo9I | GATC | 9 cut(s) | 70, 79, 180, 223, 357, 413, 676, 826, 1095 |
| LmnI | GCTCC | 5 cut(s) | 580, 650, 736, 808, 844 |
| Lsp1109I | GCAGC | 1 cut(s) | 910 |
| LweI | GCATC | 5 cut(s) | 4, 524, 529, 876, 997 |
| MaeI | CTAG | 2 cut(s) | 731, 1099 |
| MaeIII | GTNAC | 5 cut(s) | 19, 184, 774, 1039, 1048 |
| MalI | GATC | 9 cut(s) | 72, 81, 182, 225, 359, 415, 678, 828, 1097 |
| MboI | GATC | 9 cut(s) | 70, 79, 180, 223, 357, 413, 676, 826, 1095 |
| MboII | GAAGA | 8 cut(s) | 257, 347, 673, 721, 724, 1037, 1069, 1072 |
| MflI | RGATCY | 2 cut(s) | 79, 1095 |
| MhlI | GDGCHC | 1 cut(s) | 585 |
| MluCI | AATT | 6 cut(s) | 39, 148, 401, 417, 512, 567 |
| MmeI | TCCRAC | 1 cut(s) | 1016 |
| MnlI | CCTC | 9 cut(s) | 60, 571, 646, 703, 706, 737, 898, 1056, 1086 |
| MroXI | GAANNNNTTC | 2 cut(s) | 401, 498 |
| MseI | TTAA | 2 cut(s) | 261, 420 |
| MspI | CCGG | 2 cut(s) | 233, 452 |
| MspR9I | CCNGG | 1 cut(s) | 233 |
| Mva1269I | GAATGC | 1 cut(s) | 913 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 895 |
| NciI | CCSGG | 1 cut(s) | 233 |
| NdeII | GATC | 9 cut(s) | 70, 79, 180, 223, 357, 413, 676, 826, 1095 |
| NlaIII | CATG | 6 cut(s) | 181, 293, 440, 563, 815, 1075 |
| NlaIV | GGNNCC | 7 cut(s) | 56, 582, 646, 834, 846, 929, 990 |
| NmuCI | GTSAC | 2 cut(s) | 19, 774 |
| NspI | RCATGY | 3 cut(s) | 293, 563, 1075 |
| NspV | TTCGAA | 1 cut(s) | 1055 |
| PaeI | GCATGC | 1 cut(s) | 1075 |
| PagI | TCATGA | 1 cut(s) | 436 |
| PaqCI | CACCTGC | 1 cut(s) | 880 |
| PctI | GAATGC | 1 cut(s) | 913 |
| PdmI | GAANNNNTTC | 2 cut(s) | 401, 498 |
| PfeI | GAWTC | 5 cut(s) | 130, 169, 318, 797, 872 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 64 |
| PinAI | ACCGGT | 1 cut(s) | 451 |
| PkrI | GCNGC | 1 cut(s) | 900 |
| PspFI | CCCAGC | 1 cut(s) | 143 |
| PspN4I | GGNNCC | 7 cut(s) | 56, 582, 646, 834, 846, 929, 990 |
| PspPI | GGNCC | 2 cut(s) | 54, 928 |
| PstI | CTGCAG | 1 cut(s) | 507 |
| PstNI | CAGNNNCTG | 1 cut(s) | 791 |
| PsuI | RGATCY | 2 cut(s) | 79, 1095 |
| RsaI | GTAC | 3 cut(s) | 103, 176, 194 |
| RsaNI | GTAC | 3 cut(s) | 102, 175, 193 |
| SaqAI | TTAA | 2 cut(s) | 261, 420 |
| SatI | GCNGC | 1 cut(s) | 899 |
| Sau3AI | GATC | 9 cut(s) | 70, 79, 180, 223, 357, 413, 676, 826, 1095 |
| Sau96I | GGNCC | 2 cut(s) | 54, 928 |
| ScrFI | CCNGG | 1 cut(s) | 233 |
| SduI | GDGCHC | 1 cut(s) | 585 |
| SfaNI | GCATC | 5 cut(s) | 4, 524, 529, 876, 997 |
| SfcI | CTRYAG | 2 cut(s) | 503, 780 |
| SfuI | TTCGAA | 1 cut(s) | 1055 |
| SinI | GGWCC | 2 cut(s) | 54, 928 |
| SphI | GCATGC | 1 cut(s) | 1075 |
| Sse9I | AATT | 6 cut(s) | 39, 148, 401, 417, 512, 567 |
| SsiI | CCGC | 1 cut(s) | 931 |
| SspMI | CTAG | 2 cut(s) | 731, 1099 |
| StyD4I | CCNGG | 1 cut(s) | 231 |
| TaaI | ACNGT | 2 cut(s) | 270, 862 |
| TaqI | TCGA | 2 cut(s) | 295, 1055 |
| TasI | AATT | 6 cut(s) | 39, 148, 401, 417, 512, 567 |
| TatI | WGTACW | 1 cut(s) | 174 |
| TfiI | GAWTC | 5 cut(s) | 130, 169, 318, 797, 872 |
| Tru1I | TTAA | 2 cut(s) | 261, 420 |
| Tru9I | TTAA | 2 cut(s) | 261, 420 |
| TscAI | CASTG | 3 cut(s) | 691, 792, 865 |
| TseFI | GTSAC | 2 cut(s) | 19, 774 |
| TseI | GCWGC | 1 cut(s) | 898 |
| Tsp45I | GTSAC | 2 cut(s) | 19, 774 |
| TspDTI | ATGAA | 3 cut(s) | 288, 348, 885 |
| TspRI | CASTG | 3 cut(s) | 691, 792, 865 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 64 |
| VpaK11BI | GGWCC | 2 cut(s) | 54, 928 |
| XapI | RAATTY | 3 cut(s) | 148, 401, 567 |
| XceI | RCATGY | 3 cut(s) | 293, 563, 1075 |
| XmnI | GAANNNNTTC | 2 cut(s) | 401, 498 |
| XspI | CTAG | 2 cut(s) | 731, 1099 |