Rmu_sc0003720.1_g000001

Domain of unknown function (DUF4283)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003720.1
Physical Location & Seq
Reverse (-)
82 .. 591
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003720.1_g000001.1.cds

Sequence Viewer

Length: 510 bp
atggatgttacgagattttctctcctctccaaaaccctagcaaacggcgacctcatcgtttttcccctaccagcctcacgtctccctcctctgtggcctccattaacgttgtcactgctagctttgctgcctcattggccctcactaatggaggtcaatccccagactaaggaaagattggttgaggccctgtgcgcaaatcctcctaatcttttctccttggaaaatccctcactttgcaagcctgtggactctgcagccttcaagtctcacttcctccaaacatggatggtggtaagggactttagggtgcaagaaagagatgacaaccttttcttgttctcattcgaatcaacccaggattggaataaggttcttagaggaggagtttggtgctttgatcgtgctccagtctgtctggaggagtacgacagggtactccctattgctgaggttccgatgaaacatgttcatatctgggttagggtttcggatattcctctgccgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

169

Amino Acids

19.4

Weight (kDa)

5.78

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 196
AclI AACGTT 1 cut(s) 107
AfaI GTAC 2 cut(s) 428, 438
AfiI CCNNNNNNNGG 2 cut(s) 169, 363
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 1 cut(s) 265
AjiI CACGTC 1 cut(s) 80
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw21I GWGCWC 1 cut(s) 409
Alw26I GTCTC 2 cut(s) 86, 273
AoxI GGCC 3 cut(s) 95, 137, 186
ApeKI GCWGC 2 cut(s) 127, 257
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 2 cut(s) 138, 187
AsuII TTCGAA 1 cut(s) 348
AsuNHI GCTAGC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 409
BbvCI CCTCAGC 1 cut(s) 450
BbvI GCAGC 2 cut(s) 114, 269
BccI CCATC 1 cut(s) 283
BceAI ACGGC 2 cut(s) 61, 490
BciT130I CCWGG 1 cut(s) 359
BcoDI GTCTC 2 cut(s) 86, 273
BfaI CTAG 2 cut(s) 38, 119
BfmI CTRYAG 1 cut(s) 255
BglI GCCNNNNNGGC 1 cut(s) 136
BisI GCNGC 2 cut(s) 128, 258
BlsI GCNGC 2 cut(s) 129, 259
Bme1390I CCNGG 1 cut(s) 359
BmgBI CACGTC 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 138, 187
BmiI GGNNCC 1 cut(s) 456
BmrFI CCNGG 1 cut(s) 359
BmtI GCTAGC 1 cut(s) 122
BplI GAGNNNNNCTC 1 cut(s) 36
BpmI CTGGAG 2 cut(s) 393, 440
Bpu10I CCTNAGC 1 cut(s) 450
Bpu14I TTCGAA 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 219, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 363
Bse1I ACTGG 1 cut(s) 410
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 2 cut(s) 219, 357
BseGI GGATG 2 cut(s) 10, 294
BseLI CCNNNNNNNGG 2 cut(s) 169, 363
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 410
BseRI GAGGAG 5 cut(s) 14, 78, 396, 399, 437
BseXI GCAGC 2 cut(s) 114, 269
BshFI GGCC 3 cut(s) 97, 139, 188
BsiHKAI GWGCWC 1 cut(s) 409
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 2 cut(s) 169, 363
BsmAI GTCTC 2 cut(s) 86, 273
BsmBI CGTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 314
BsnI GGCC 3 cut(s) 97, 139, 188
Bsp119I TTCGAA 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 409
Bsp143I GATC 1 cut(s) 400
BspANI GGCC 3 cut(s) 97, 139, 188
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 456
BspMAI CTGCAG 1 cut(s) 259
BspOI GCTAGC 1 cut(s) 122
BspT104I TTCGAA 1 cut(s) 348
BsrI ACTGG 1 cut(s) 410
BssECI CCNNGG 2 cut(s) 219, 357
BssMI GATC 1 cut(s) 400
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 359
BstBI TTCGAA 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 120, 242
BstDEI CTNAG 3 cut(s) 168, 377, 450
BstF5I GGATG 2 cut(s) 10, 294
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 2 cut(s) 86, 273
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 3 cut(s) 124, 136, 194
BstNI CCWGG 1 cut(s) 359
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 357
BstSFI CTRYAG 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 114, 269
BsuRI GGCC 3 cut(s) 97, 139, 188
BtrI CACGTC 1 cut(s) 80
BtsCI GGATG 2 cut(s) 10, 294
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 120, 242
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 138, 187
Csp6I GTAC 2 cut(s) 427, 437
CviAII CATG 2 cut(s) 285, 467
CviJI RGCY 7 cut(s) 74, 97, 122, 139, 188, 244, 260
CviKI_1 RGCY 7 cut(s) 74, 97, 122, 139, 188, 244, 260
CviQI GTAC 2 cut(s) 427, 437
DdeI CTNAG 3 cut(s) 168, 377, 450
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
Eco130I CCWWGG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 2 cut(s) 288, 470
FaiI YATR 3 cut(s) 286, 468, 474
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 1 cut(s) 314
FatI CATG 2 cut(s) 284, 466
Fnu4HI GCNGC 2 cut(s) 128, 258
FokI GGATG 2 cut(s) 17, 301
Fsp4HI GCNGC 2 cut(s) 128, 258
FspBI CTAG 2 cut(s) 38, 119
FspI TGCGCA 1 cut(s) 196
GlaI GCGC 1 cut(s) 196
GluI GCNGC 2 cut(s) 128, 258
GsuI CTGGAG 2 cut(s) 393, 440
HaeIII GGCC 3 cut(s) 97, 139, 188
HhaI GCGC 1 cut(s) 197
Hin1II CATG 2 cut(s) 288, 470
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HinfI GANTC 2 cut(s) 251, 350
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 459, 493
Hpy188III TCNNGA 1 cut(s) 419
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 271
HpyCH4IV ACGT 2 cut(s) 79, 107
HpyCH4V TGCA 3 cut(s) 240, 257, 313
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 136, 194
HpyF3I CTNAG 3 cut(s) 168, 377, 450
HpySE526I ACGT 2 cut(s) 79, 107
Hsp92II CATG 2 cut(s) 288, 470
HspAI GCGC 1 cut(s) 195
Kzo9I GATC 1 cut(s) 400
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 2 cut(s) 114, 269
MaeI CTAG 2 cut(s) 38, 119
MaeII ACGT 2 cut(s) 79, 107
MaeIII GTNAC 2 cut(s) 7, 111
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 409
MlyI GAGTC 1 cut(s) 245
MseI TTAA 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 359
MvaI CCWGG 1 cut(s) 359
MwoI GCNNNNNNNGC 3 cut(s) 124, 136, 194
NdeII GATC 1 cut(s) 400
NheI GCTAGC 1 cut(s) 118
NlaIII CATG 2 cut(s) 288, 470
NlaIV GGNNCC 1 cut(s) 456
NmuCI GTSAC 1 cut(s) 111
NsbI TGCGCA 1 cut(s) 196
NspI RCATGY 1 cut(s) 470
NspV TTCGAA 1 cut(s) 348
PciI ACATGT 1 cut(s) 466
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 2 cut(s) 129, 259
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PscI ACATGT 1 cut(s) 466
Psp1406I AACGTT 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 357
PspGI CCWGG 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 456
PspPI GGNCC 2 cut(s) 138, 187
PstI CTGCAG 1 cut(s) 259
RsaI GTAC 2 cut(s) 428, 438
RsaNI GTAC 2 cut(s) 427, 437
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 2 cut(s) 128, 258
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 2 cut(s) 138, 187
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 359
SduI GDGCHC 1 cut(s) 409
SetI ASST 8 cut(s) 54, 82, 110, 124, 156, 333, 375, 456
SfcI CTRYAG 1 cut(s) 255
SfuI TTCGAA 1 cut(s) 348
SspMI CTAG 2 cut(s) 38, 119
StyD4I CCNGG 1 cut(s) 357
StyI CCWWGG 1 cut(s) 219
TaiI ACGT 2 cut(s) 82, 110
TaqI TCGA 1 cut(s) 348
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 1 cut(s) 111
TseI GCWGC 2 cut(s) 127, 257
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 2 cut(s) 461, 476
TspRI CASTG 1 cut(s) 120
XceI RCATGY 1 cut(s) 470
XspI CTAG 2 cut(s) 38, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.