Rroxscaffold_2G00097170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000169
Physical Location & Seq
Forward (+)
18439462 .. 18439821
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00097170.1

Sequence Viewer

Length: 360 bp
ATGGCCTCCATTGATGCTATCACCGCTAGTTATGCAGCCTCCCTTGCACTTGTAAAGGGTGGTAATGCTCCCGATGCGGGGAGAATTGGTGGCAGCCACTGTTTGTCGGTTTTCCAAATATTTTCGATTGGGAAGCCTCGACCCGCTGACCGGTCAACTCGCGCCCTTCAAGGCTCACTTCCTTCATACCTGGATGGATGTCACTCGGTGATGTTGAAGCAAAAGTCGAGCAAGCTACTTGGGAGTAGGATCAAGAATCATCACCACGCCAAGAAGCCGAATGTTGCTACTTTGCAATTCTCTTACCCCAATTACGGTACCGATCCCAGCCCTAGCGACAAGGGCAAGGGAAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.55

Weight (kDa)

9.96

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 317
AccII CGCG 1 cut(s) 162
AciI CCGC 3 cut(s) 24, 77, 144
AclWI GGATC 2 cut(s) 257, 317
AdeI CACNNNGTG 1 cut(s) 208
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 4 cut(s) 77, 78, 150, 314
AgeI ACCGGT 1 cut(s) 150
AgsI TTSAA 2 cut(s) 170, 217
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 2 cut(s) 235, 355
AluI AGCT 2 cut(s) 235, 355
AlwI GGATC 2 cut(s) 257, 317
AlwNI CAGNNNCTG 1 cut(s) 99
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 35, 93
AsiGI ACCGGT 1 cut(s) 150
Asp718I GGTACC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 164
AsuHPI GGTGA 3 cut(s) 13, 220, 254
BanI GGYRCC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 47, 105
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 191
BfaI CTAG 2 cut(s) 27, 333
BisI GCNGC 2 cut(s) 36, 94
BlsI GCNGC 2 cut(s) 37, 95
Bme1390I CCNGG 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 2 cut(s) 4, 64
BsaWI WCCGGW 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 78, 150, 314
Bse118I RCCGGY 1 cut(s) 150
BseBI CCWGG 1 cut(s) 191
BseGI GGATG 2 cut(s) 199, 203
BseLI CCNNNNNNNGG 4 cut(s) 77, 78, 150, 314
BseXI GCAGC 2 cut(s) 47, 105
BseYI CCCAGC 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 317
BshTI ACCGGT 1 cut(s) 150
BsiSI CCGG 1 cut(s) 151
BslI CCNNNNNNNGG 4 cut(s) 77, 78, 150, 314
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 249, 322
BspACI CCGC 3 cut(s) 24, 77, 144
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 319
BspPI GGATC 2 cut(s) 257, 317
BspT107I GGYRCC 1 cut(s) 317
BsrFI RCCGGY 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 150
BssMI GATC 2 cut(s) 249, 322
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 101, 317
BstC8I GCNNGC 1 cut(s) 233
BstF5I GGATG 2 cut(s) 199, 203
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 2 cut(s) 252, 325
BstMBI GATC 2 cut(s) 249, 322
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 74, 342
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 47, 105
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 199, 203
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 233
CaiI CAGNNNCTG 1 cut(s) 99
CfoI GCGC 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 150
Csp6I GTAC 1 cut(s) 318
CspAI ACCGGT 1 cut(s) 150
CviJI RGCY 9 cut(s) 5, 38, 96, 136, 174, 235, 277, 330, 355
CviKI_1 RGCY 9 cut(s) 5, 38, 96, 136, 174, 235, 277, 330, 355
CviQI GTAC 1 cut(s) 318
DpnI GATC 2 cut(s) 251, 324
DpnII GATC 2 cut(s) 249, 322
DraIII CACNNNGTG 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 189
FaiI YATR 2 cut(s) 33, 187
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FauI CCCGC 2 cut(s) 70, 151
Fnu4HI GCNGC 2 cut(s) 36, 94
FokI GGATG 2 cut(s) 206, 210
Fsp4HI GCNGC 2 cut(s) 36, 94
FspBI CTAG 2 cut(s) 27, 333
GlaI GCGC 1 cut(s) 163
GluI GCNGC 2 cut(s) 36, 94
GsaI CCCAGC 1 cut(s) 330
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 151
HhaI GCGC 1 cut(s) 164
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 1 cut(s) 256
HpaII CCGG 1 cut(s) 151
HphI GGTGA 3 cut(s) 13, 220, 254
Hpy166II GTNNAC 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 71, 253
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 176, 192
HpyCH4III ACNGT 2 cut(s) 101, 317
HpyCH4V TGCA 3 cut(s) 35, 47, 295
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 74, 342
HspAI GCGC 1 cut(s) 162
KpnI GGTACC 1 cut(s) 321
Kzo9I GATC 2 cut(s) 249, 322
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 4 cut(s) 164, 176, 203, 340
Lsp1109I GCAGC 2 cut(s) 47, 105
LweI GCATC 2 cut(s) 4, 64
MaeI CTAG 2 cut(s) 27, 333
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 251, 324
MboI GATC 2 cut(s) 249, 322
MluCI AATT 3 cut(s) 84, 296, 310
MnlI CCTC 3 cut(s) 16, 49, 147
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 74, 342
NdeII GATC 2 cut(s) 249, 322
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 256
PinAI ACCGGT 1 cut(s) 150
PkrI GCNGC 2 cut(s) 37, 95
Psp6I CCWGG 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 319
PstNI CAGNNNCTG 1 cut(s) 99
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SatI GCNGC 2 cut(s) 36, 94
Sau3AI GATC 2 cut(s) 249, 322
ScrFI CCNGG 1 cut(s) 191
SetI ASST 3 cut(s) 192, 237, 357
SfaNI GCATC 2 cut(s) 4, 64
Sse9I AATT 3 cut(s) 84, 296, 310
SsiI CCGC 3 cut(s) 24, 77, 144
SspI AATATT 1 cut(s) 120
SspMI CTAG 2 cut(s) 27, 333
StyD4I CCNGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 101, 317
TaqI TCGA 3 cut(s) 125, 139, 227
TasI AATT 3 cut(s) 84, 296, 310
TfiI GAWTC 1 cut(s) 256
TscAI CASTG 1 cut(s) 104
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 35, 93
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 1 cut(s) 104
XspI CTAG 2 cut(s) 27, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.