Rmu_sc0001081.1_g000001

Domain of unknown function (DUF4283)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001081.1
Physical Location & Seq
Forward (+)
1003 .. 1484
482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001081.1_g000001.1.cds

Sequence Viewer

Length: 354 bp
atggcttcaatcgacaccgtcactgccagttttgcagcctctctggctcttgctgaaggggacgtggatggtggagaaggatttcaggattcaagagaagactggcaacctattcctgttctccttgattcggtccgggatcagaacaaggtgctttggggtggtgtgtggtgctttgacaaagccctaatatgtctggaggagtatgatggtgttcttcccatcgttgaagtctctctgaagcatgttaggatgtgggttagggttgctgacatccctcctctctacgaggaacctgacaatttcatcctcattggaaacctgatgggtggttatctggacaacgataagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

12.98

Weight (kDa)

4.09

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 147
AcuI CTGAAG 2 cut(s) 75, 260
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 3 cut(s) 9, 93, 230
AjiI CACGTC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 1 cut(s) 137
AvaII GGWCC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 47
BccI CCATC 4 cut(s) 62, 203, 230, 319
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 238
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 27, 107
BseGI GGATG 4 cut(s) 73, 258, 273, 306
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 2 cut(s) 27, 107
BseRI GAGGAG 2 cut(s) 215, 270
BseXI GCAGC 1 cut(s) 47
BsiSI CCGG 1 cut(s) 136
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 1 cut(s) 147
BsrI ACTGG 2 cut(s) 27, 107
BssMI GATC 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 19
BstF5I GGATG 4 cut(s) 73, 258, 273, 306
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 32, 44
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 105
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 4 cut(s) 73, 258, 273, 306
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 133
CpoI CGGWCCG 1 cut(s) 133
CspI CGGWCCG 1 cut(s) 133
CviAII CATG 1 cut(s) 245
CviJI RGCY 4 cut(s) 5, 38, 47, 185
CviKI_1 RGCY 4 cut(s) 5, 38, 47, 185
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 2 cut(s) 75, 260
FaeI CATG 1 cut(s) 248
FaiI YATR 3 cut(s) 193, 207, 246
FaqI GGGAC 1 cut(s) 74
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 4 cut(s) 80, 260, 265, 293
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 218
HapII CCGG 1 cut(s) 136
Hin1II CATG 1 cut(s) 248
HinfI GANTC 2 cut(s) 89, 128
HpaII CCGG 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 144, 240
Hpy188III TCNNGA 4 cut(s) 86, 93, 197, 338
HpyAV CCTTC 2 cut(s) 50, 71
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 44
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 1 cut(s) 248
Kzo9I GATC 1 cut(s) 139
Lsp1109I GCAGC 1 cut(s) 47
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 110, 209
MluCI AATT 1 cut(s) 301
MnlI CCTC 6 cut(s) 49, 193, 283, 288, 291, 320
MroXI GAANNNNTTC 1 cut(s) 81
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 32, 44
NciI CCSGG 1 cut(s) 137
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 2 cut(s) 89, 128
PflFI GACNNNGTC 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 135
PkrI GCNGC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 1 cut(s) 133
PsyI GACNNNGTC 1 cut(s) 17
Rsr2I CGGWCCG 1 cut(s) 133
RsrII CGGWCCG 1 cut(s) 133
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 137
SetI ASST 5 cut(s) 66, 112, 153, 298, 324
SinI GGWCC 1 cut(s) 133
Sse9I AATT 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 12
TaqII GACCGA 1 cut(s) 121
TasI AATT 1 cut(s) 301
TfiI GAWTC 2 cut(s) 89, 128
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 295
TspRI CASTG 1 cut(s) 28
Tth111I GACNNNGTC 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 133
XceI RCATGY 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.