Rmu_sc0030397.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030397.1
OG0000169
Physical Location & Seq
Reverse (-)
355 .. 894
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030397.1_g000001.1.cds

Sequence Viewer

Length: 540 bp
atggcttccatagacgctgtgactgctagctttgccgcttctctggcacttgctgatggaggcaaagctccagatctgggaaggattggaggaggacctgttcgcaggtcttctcaatcttttcttcttggcaagccgctcacccggaaaccagttgatcccttcgccttcaaggctcactttctccggacgtggctggtggacaaggagtttagggttcaggaacgtgcagacaaccacttcttattctcttttggctctgttcgggatcggaacaaagttctaaagggtggtgtgtggtgttacgatcgtgccccggtctgtctggaggaatatgatggcgttctatccattggggacgtccctatgaaacatatcagaatctgggttagggattcgggtatccctcccctctatgaggagccagacaacctcattctcgtcggaaatctgctaggaagctacctggactatgacaagaaggaattttgcaaaggtatcgtcgagttttcttggccacaggtgttgaacctacactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

179

Amino Acids

20.04

Weight (kDa)

7.73

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 363
Acc36I ACCTGC 1 cut(s) 96
AccBSI CCGCTC 1 cut(s) 139
AccIII TCCGGA 1 cut(s) 186
AciI CCGC 2 cut(s) 36, 137
AclWI GGATC 2 cut(s) 152, 276
AcoI YGGCCR 1 cut(s) 515
AcsI RAATTY 1 cut(s) 485
AcyI GRCGYC 1 cut(s) 360
AfiI CCNNNNNNNGG 2 cut(s) 77, 418
AgsI TTSAA 2 cut(s) 172, 529
AjiI CACGTC 1 cut(s) 192
AjnI CCWGG 1 cut(s) 465
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 3 cut(s) 30, 68, 462
AluI AGCT 3 cut(s) 30, 68, 462
AlwI GGATC 2 cut(s) 152, 276
AlwNI CAGNNNCTG 1 cut(s) 384
Aor13HI TCCGGA 1 cut(s) 186
AoxI GGCC 1 cut(s) 515
ApoI RAATTY 1 cut(s) 485
ArsI GACNNNNNNTTYG 2 cut(s) 486, 518
AspS9I GGNCC 1 cut(s) 95
AsuC2I CCSGG 2 cut(s) 145, 317
AsuHPI GGTGA 1 cut(s) 133
AsuNHI GCTAGC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 316
BalI TGGCCA 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 102
BccI CCATC 2 cut(s) 50, 332
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 1 cut(s) 467
BciVI GTATCC 1 cut(s) 413
BcnI CCSGG 2 cut(s) 145, 317
BfaI CTAG 2 cut(s) 27, 455
BfuAI ACCTGC 1 cut(s) 96
BfuI GTATCC 1 cut(s) 413
BglI GCCNNNNNGGC 1 cut(s) 173
BglII AGATCT 1 cut(s) 73
BisI GCNGC 2 cut(s) 36, 137
BlsI GCNGC 2 cut(s) 37, 138
Bme1390I CCNGG 3 cut(s) 145, 317, 467
Bme18I GGWCC 1 cut(s) 95
BmgBI CACGTC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 3 cut(s) 145, 317, 467
BmtI GCTAGC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 102
BpmI CTGGAG 2 cut(s) 54, 347
BpuMI CCSGG 2 cut(s) 145, 317
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 315
BsaWI WCCGGW 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 418
Bse1I ACTGG 1 cut(s) 152
BseAI TCCGGA 1 cut(s) 186
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 1 cut(s) 315
BseLI CCNNNNNNNGG 2 cut(s) 77, 418
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 2 cut(s) 105, 434
BseSI GKGCMC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 249
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 1 cut(s) 517
BsiEI CGRYCG 1 cut(s) 310
BsiSI CCGG 3 cut(s) 145, 187, 317
BslFI GGGAC 2 cut(s) 347, 371
BslI CCNNNNNNNGG 2 cut(s) 77, 418
BsmFI GGGAC 2 cut(s) 347, 371
BsnI GGCC 1 cut(s) 517
Bsp1286I GDGCHC 1 cut(s) 316
Bsp13I TCCGGA 1 cut(s) 186
Bsp143I GATC 4 cut(s) 73, 157, 268, 307
BspACI CCGC 2 cut(s) 36, 137
BspANI GGCC 1 cut(s) 517
BspEI TCCGGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 96
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 2 cut(s) 152, 276
BsrBI CCGCTC 1 cut(s) 139
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 4 cut(s) 73, 157, 268, 307
BssNI GRCGYC 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 467
BstACI GRCGYC 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 28, 134
BstENI CCTNNNNNAGG 1 cut(s) 416
BstKTI GATC 4 cut(s) 76, 160, 271, 310
BstMBI GATC 4 cut(s) 73, 157, 268, 307
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 173
BstNI CCWGG 1 cut(s) 467
BstSCI CCNGG 3 cut(s) 143, 315, 465
BstSLI GKGCMC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 1 cut(s) 517
BtrI CACGTC 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 535
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 2 cut(s) 28, 134
CaiI CAGNNNCTG 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 95
CseI GACGC 1 cut(s) 23
CspCI CAANNNNNGTGG 1 cut(s) 507
DpnI GATC 4 cut(s) 75, 159, 270, 309
DpnII GATC 4 cut(s) 73, 157, 268, 307
EaeI YGGCCR 1 cut(s) 515
Eco47I GGWCC 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 416
EcoO109I RGGNCCY 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 465
FaiI YATR 6 cut(s) 11, 336, 368, 375, 417, 474
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 2 cut(s) 347, 371
Fnu4HI GCNGC 2 cut(s) 36, 137
Fsp4HI GCNGC 2 cut(s) 36, 137
FspBI CTAG 2 cut(s) 27, 455
GluI GCNGC 2 cut(s) 36, 137
GsuI CTGGAG 2 cut(s) 54, 347
HaeIII GGCC 1 cut(s) 517
HapII CCGG 3 cut(s) 145, 187, 317
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 360
HinfI GANTC 2 cut(s) 381, 395
HpaII CCGG 3 cut(s) 145, 187, 317
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 3 cut(s) 273, 380, 446
Hpy188III TCNNGA 5 cut(s) 71, 187, 221, 266, 326
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 2 cut(s) 446, 506
HpyAV CCTTC 4 cut(s) 75, 172, 178, 475
HpyCH4IV ACGT 3 cut(s) 191, 226, 360
HpyCH4V TGCA 2 cut(s) 230, 492
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 173
HpySE526I ACGT 3 cut(s) 191, 226, 360
Hsp92I GRCGYC 1 cut(s) 360
Kpn2I TCCGGA 1 cut(s) 186
Kzo9I GATC 4 cut(s) 73, 157, 268, 307
LmnI GCTCC 2 cut(s) 73, 421
MaeI CTAG 2 cut(s) 27, 455
MaeII ACGT 3 cut(s) 191, 226, 360
MaeIII GTNAC 2 cut(s) 19, 302
MalI GATC 4 cut(s) 75, 159, 270, 309
MbiI CCGCTC 1 cut(s) 139
MboI GATC 4 cut(s) 73, 157, 268, 307
MboII GAAGA 2 cut(s) 102, 116
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 316
MlsI TGGCCA 1 cut(s) 517
MluCI AATT 1 cut(s) 485
MluNI TGGCCA 1 cut(s) 517
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 8 cut(s) 53, 83, 86, 322, 412, 417, 422, 443
Mox20I TGGCCA 1 cut(s) 517
MroI TCCGGA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 517
Msp20I TGGCCA 1 cut(s) 517
MspI CCGG 3 cut(s) 145, 187, 317
MspR9I CCNGG 3 cut(s) 145, 317, 467
MvaI CCWGG 1 cut(s) 467
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 173
NciI CCSGG 2 cut(s) 145, 317
NdeII GATC 4 cut(s) 73, 157, 268, 307
NheI GCTAGC 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 423
NmuCI GTSAC 1 cut(s) 19
PfeI GAWTC 2 cut(s) 381, 395
PkrI GCNGC 2 cut(s) 37, 138
Ple19I CGATCG 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 465
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 1 cut(s) 95
PspPPI RGGWCCY 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 384
PsuI RGATCY 1 cut(s) 73
PvuI CGATCG 1 cut(s) 310
SatI GCNGC 2 cut(s) 36, 137
Sau3AI GATC 4 cut(s) 73, 157, 268, 307
Sau96I GGNCC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 145, 317, 467
SduI GDGCHC 1 cut(s) 316
SinI GGWCC 1 cut(s) 95
Sse9I AATT 1 cut(s) 485
SsiI CCGC 2 cut(s) 36, 137
SspMI CTAG 2 cut(s) 27, 455
StyD4I CCNGG 3 cut(s) 143, 315, 465
TaiI ACGT 3 cut(s) 194, 229, 363
TaqI TCGA 1 cut(s) 504
TasI AATT 1 cut(s) 485
TauI GCSGC 2 cut(s) 38, 139
TfiI GAWTC 2 cut(s) 381, 395
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 416
XapI RAATTY 1 cut(s) 485
XspI CTAG 2 cut(s) 27, 455
ZraI GACGTC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.