RLG00000007550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000169
Physical Location & Seq
Forward (+)
18045125 .. 18046657
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007550

Sequence Viewer

Length: 426 bp
ATGGCACTGGTGGCTTTCGCTCAAGCAGTGACATTCGAAACTGTTCTCATCGCGGCATTGCTTCTCGCACGTATGGCAGTCCCACCGGAGCTTCTCAAGTCCCATGGCTTTGGGCGTGAGGAAGTCGTTCTTCCCCATAGTGATGGTTCACGGAGATTGGGGTTGGATTTTGGTTTGGGAGAAATTGGGAATGGAAATCTTAACCCTAGGATTGGATTTTTAGGGGAAGTTGCTAAACGTCTTGTCAAGTTAGTAATAACTTCTTCCATCCTACACAACCACCTTGTGAAGAAAAACCACCCCCACGCCACCCCACTCAACCACCACTGCATAAGCGAAGCCAATTACCAGCCGGCAGGGAGTGACTCGAAACCCTTGTCCACCCCTCTAAACCTAACCCTCACTGGAGAGAAGGGACTGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.15

Weight (kDa)

9.3

Isoelectric Point (pI)

30.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 53
AciI CCGC 1 cut(s) 53
AdeI CACNNNGTG 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 212
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
Asp700I GAANNNNTTC 2 cut(s) 42, 126
AspA2I CCTAGG 1 cut(s) 206
AsuII TTCGAA 1 cut(s) 36
AvrII CCTAGG 1 cut(s) 206
BccI CCATC 2 cut(s) 137, 275
BfaI CTAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 54
BlnI CCTAGG 1 cut(s) 206
BlsI GCNGC 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 426
Bpu14I TTCGAA 1 cut(s) 36
BpuEI CTTGAG 2 cut(s) 6, 80
BsaAI YACGTR 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 103, 206
BsaWI WCCGGW 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse118I RCCGGY 1 cut(s) 352
Bse1I ACTGG 2 cut(s) 12, 409
Bse3DI GCAATG 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 103, 206
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMI GCAATG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 2 cut(s) 12, 409
Bsh1236I CGCG 1 cut(s) 53
BsiSI CCGG 2 cut(s) 86, 353
BslFI GGGAC 2 cut(s) 65, 85
BslI CCNNNNNNNGG 1 cut(s) 212
BsmFI GGGAC 2 cut(s) 65, 85
Bsp119I TTCGAA 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 411
BspFNI CGCG 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 352
BsrI ACTGG 2 cut(s) 12, 409
BssAI RCCGGY 1 cut(s) 352
BssECI CCNNGG 2 cut(s) 103, 206
BssT1I CCWWGG 2 cut(s) 103, 206
Bst4CI ACNGT 1 cut(s) 43
BstBAI YACGTR 1 cut(s) 71
BstBI TTCGAA 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 419
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 267
BstFNI CGCG 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 11, 74
BstUI CGCG 1 cut(s) 53
BstXI CCANNNNNNTGG 2 cut(s) 110, 143
BtgI CCRYGG 1 cut(s) 103
BtgZI GCGATG 1 cut(s) 34
BtsCI GGATG 1 cut(s) 267
BtsI GCAGTG 2 cut(s) 33, 325
BtsIMutI CAGTG 4 cut(s) 5, 33, 325, 402
Cac8I GCNNGC 1 cut(s) 354
Cfr10I RCCGGY 1 cut(s) 352
CviAII CATG 1 cut(s) 104
CviJI RGCY 5 cut(s) 14, 91, 108, 341, 352
CviKI_1 RGCY 5 cut(s) 14, 91, 108, 341, 352
DdeI CTNAG 1 cut(s) 419
DraIII CACNNNGTG 1 cut(s) 286
Eco130I CCWWGG 2 cut(s) 103, 206
EcoT14I CCWWGG 2 cut(s) 103, 206
ErhI CCWWGG 2 cut(s) 103, 206
FaeI CATG 1 cut(s) 107
FaiI YATR 4 cut(s) 74, 105, 138, 332
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 2 cut(s) 65, 85
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 207
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 426
HapII CCGG 2 cut(s) 86, 353
Hin1II CATG 1 cut(s) 107
HinfI GANTC 1 cut(s) 365
HpaII CCGG 2 cut(s) 86, 353
Hpy166II GTNNAC 2 cut(s) 149, 381
Hpy8I GTNNAC 2 cut(s) 149, 381
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 2 cut(s) 70, 238
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 74
HpyF3I CTNAG 1 cut(s) 419
HpySE526I ACGT 2 cut(s) 70, 238
Hsp92II CATG 1 cut(s) 107
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 5 cut(s) 99, 342, 362, 366, 390
MaeI CTAG 1 cut(s) 207
MaeII ACGT 2 cut(s) 70, 238
MaeIII GTNAC 2 cut(s) 28, 362
MboII GAAGA 3 cut(s) 122, 255, 301
MluCI AATT 2 cut(s) 183, 343
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 3 cut(s) 112, 396, 410
MroNI GCCGGC 1 cut(s) 352
MroXI GAANNNNTTC 2 cut(s) 42, 126
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 2 cut(s) 86, 353
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 11, 74
NaeI GCCGGC 1 cut(s) 354
NcoI CCATGG 1 cut(s) 103
NgoMIV GCCGGC 1 cut(s) 352
NlaIII CATG 1 cut(s) 107
NmuCI GTSAC 2 cut(s) 28, 362
NspV TTCGAA 1 cut(s) 36
PdiI GCCGGC 1 cut(s) 354
PdmI GAANNNNTTC 2 cut(s) 42, 126
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Ppu21I YACGTR 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 54
SchI GAGTC 1 cut(s) 359
SetI ASST 5 cut(s) 73, 93, 241, 285, 396
SfuI TTCGAA 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 2 cut(s) 21, 95
SmoI CTYRAG 2 cut(s) 21, 95
Sse9I AATT 2 cut(s) 183, 343
SsiI CCGC 1 cut(s) 53
SspMI CTAG 1 cut(s) 207
StyI CCWWGG 2 cut(s) 103, 206
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 2 cut(s) 73, 241
TaqI TCGA 2 cut(s) 36, 368
TasI AATT 2 cut(s) 183, 343
TauI GCSGC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 4 cut(s) 12, 33, 332, 409
TseFI GTSAC 2 cut(s) 28, 362
Tsp45I GTSAC 2 cut(s) 28, 362
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 4 cut(s) 12, 33, 332, 409
XmaJI CCTAGG 1 cut(s) 206
XmnI GAANNNNTTC 2 cut(s) 42, 126
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.