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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 462 |
| AciI | CCGC | 2 cut(s) | 421, 494 |
| AclI | AACGTT | 1 cut(s) | 154 |
| AcsI | RAATTY | 1 cut(s) | 178 |
| AfaI | GTAC | 1 cut(s) | 366 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 107, 278 |
| AgsI | TTSAA | 2 cut(s) | 45, 226 |
| AluBI | AGCT | 4 cut(s) | 319, 389, 482, 563 |
| AluI | AGCT | 4 cut(s) | 319, 389, 482, 563 |
| Alw26I | GTCTC | 2 cut(s) | 392, 500 |
| AoxI | GGCC | 1 cut(s) | 436 |
| ApoI | RAATTY | 1 cut(s) | 178 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 170, 202, 455, 487 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 21 |
| AspA2I | CCTAGG | 1 cut(s) | 101 |
| AsuC2I | CCSGG | 1 cut(s) | 202 |
| AsuHPI | GGTGA | 3 cut(s) | 47, 137, 351 |
| AvrII | CCTAGG | 1 cut(s) | 101 |
| BccI | CCATC | 1 cut(s) | 32 |
| BclI | TGATCA | 1 cut(s) | 532 |
| BcnI | CCSGG | 1 cut(s) | 202 |
| BcoDI | GTCTC | 2 cut(s) | 392, 500 |
| BfaI | CTAG | 5 cut(s) | 102, 342, 384, 390, 542 |
| BfmI | CTRYAG | 1 cut(s) | 145 |
| BglII | AGATCT | 1 cut(s) | 333 |
| BlnI | CCTAGG | 1 cut(s) | 101 |
| BmcAI | AGTACT | 1 cut(s) | 366 |
| Bme1390I | CCNGG | 1 cut(s) | 202 |
| BmrFI | CCNGG | 1 cut(s) | 202 |
| BmsI | GCATC | 3 cut(s) | 182, 243, 408 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 220, 252 |
| Bpu10I | CCTNAGC | 1 cut(s) | 564 |
| BpuMI | CCSGG | 1 cut(s) | 202 |
| BsaJI | CCNNGG | 2 cut(s) | 31, 101 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 480, 510 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 107, 278 |
| Bse1I | ACTGG | 2 cut(s) | 362, 372 |
| Bse3DI | GCAATG | 1 cut(s) | 360 |
| BseDI | CCNNGG | 2 cut(s) | 31, 101 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 107, 278 |
| BseMI | GCAATG | 1 cut(s) | 360 |
| BseMII | CTCAG | 1 cut(s) | 321 |
| BseNI | ACTGG | 2 cut(s) | 362, 372 |
| BseRI | GAGGAG | 1 cut(s) | 228 |
| BshFI | GGCC | 1 cut(s) | 438 |
| BsiSI | CCGG | 1 cut(s) | 201 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 107, 278 |
| BsmAI | GTCTC | 2 cut(s) | 392, 500 |
| BsnI | GGCC | 1 cut(s) | 438 |
| Bsp143I | GATC | 3 cut(s) | 136, 333, 532 |
| Bsp19I | CCATGG | 1 cut(s) | 31 |
| BspACI | CCGC | 2 cut(s) | 421, 494 |
| BspANI | GGCC | 1 cut(s) | 438 |
| BspCNI | CTCAG | 1 cut(s) | 322 |
| BsrDI | GCAATG | 1 cut(s) | 360 |
| BsrI | ACTGG | 2 cut(s) | 362, 372 |
| BssECI | CCNNGG | 2 cut(s) | 31, 101 |
| BssMI | GATC | 3 cut(s) | 136, 333, 532 |
| BssT1I | CCWWGG | 2 cut(s) | 31, 101 |
| Bst6I | CTCTTC | 3 cut(s) | 213, 221, 306 |
| BstDEI | CTNAG | 3 cut(s) | 330, 519, 564 |
| BstDSI | CCRYGG | 1 cut(s) | 31 |
| BstKTI | GATC | 3 cut(s) | 139, 336, 535 |
| BstMAI | GTCTC | 2 cut(s) | 392, 500 |
| BstMBI | GATC | 3 cut(s) | 136, 333, 532 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 141, 262 |
| BstSCI | CCNGG | 1 cut(s) | 200 |
| BstSFI | CTRYAG | 1 cut(s) | 145 |
| BstX2I | RGATCY | 1 cut(s) | 333 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 38 |
| BstYI | RGATCY | 1 cut(s) | 333 |
| BsuRI | GGCC | 1 cut(s) | 438 |
| BtgI | CCRYGG | 1 cut(s) | 31 |
| Csp6I | GTAC | 1 cut(s) | 365 |
| CviAII | CATG | 1 cut(s) | 32 |
| CviJI | RGCY | 8 cut(s) | 5, 319, 389, 438, 471, 482, 538, 563 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 319, 389, 438, 471, 482, 538, 563 |
| CviQI | GTAC | 1 cut(s) | 365 |
| DdeI | CTNAG | 3 cut(s) | 330, 519, 564 |
| DpnI | GATC | 3 cut(s) | 138, 335, 534 |
| DpnII | GATC | 3 cut(s) | 136, 333, 532 |
| Eam1104I | CTCTTC | 3 cut(s) | 213, 221, 306 |
| EarI | CTCTTC | 3 cut(s) | 213, 221, 306 |
| Eco130I | CCWWGG | 2 cut(s) | 31, 101 |
| EcoT14I | CCWWGG | 2 cut(s) | 31, 101 |
| ErhI | CCWWGG | 2 cut(s) | 31, 101 |
| FaeI | CATG | 1 cut(s) | 35 |
| FaiI | YATR | 4 cut(s) | 33, 207, 452, 572 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 9, 41, 275, 307, 303, 335 |
| FatI | CATG | 1 cut(s) | 31 |
| FbaI | TGATCA | 1 cut(s) | 532 |
| FblI | GTMKAC | 1 cut(s) | 462 |
| FspBI | CTAG | 5 cut(s) | 102, 342, 384, 390, 542 |
| HaeIII | GGCC | 1 cut(s) | 438 |
| HapII | CCGG | 1 cut(s) | 201 |
| Hin1II | CATG | 1 cut(s) | 35 |
| HindIII | AAGCTT | 2 cut(s) | 317, 480 |
| HinfI | GANTC | 3 cut(s) | 185, 326, 400 |
| HpaII | CCGG | 1 cut(s) | 201 |
| HphI | GGTGA | 3 cut(s) | 47, 137, 351 |
| Hpy166II | GTNNAC | 1 cut(s) | 463 |
| Hpy188I | TCNGA | 4 cut(s) | 96, 190, 331, 447 |
| Hpy8I | GTNNAC | 1 cut(s) | 463 |
| HpyAV | CCTTC | 3 cut(s) | 116, 414, 428 |
| HpyCH4IV | ACGT | 1 cut(s) | 154 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 141, 262 |
| HpyF3I | CTNAG | 3 cut(s) | 330, 519, 564 |
| HpySE526I | ACGT | 1 cut(s) | 154 |
| Hsp92II | CATG | 1 cut(s) | 35 |
| Ksp22I | TGATCA | 1 cut(s) | 532 |
| Kzo9I | GATC | 3 cut(s) | 136, 333, 532 |
| LpnPI | CCDG | 5 cut(s) | 154, 214, 270, 353, 375 |
| LweI | GCATC | 3 cut(s) | 182, 243, 408 |
| MaeI | CTAG | 5 cut(s) | 102, 342, 384, 390, 542 |
| MaeII | ACGT | 1 cut(s) | 154 |
| MaeIII | GTNAC | 1 cut(s) | 357 |
| MalI | GATC | 3 cut(s) | 138, 335, 534 |
| MboI | GATC | 3 cut(s) | 136, 333, 532 |
| MboII | GAAGA | 6 cut(s) | 17, 203, 230, 238, 323, 427 |
| MflI | RGATCY | 1 cut(s) | 333 |
| MluCI | AATT | 3 cut(s) | 78, 178, 297 |
| MlyI | GAGTC | 3 cut(s) | 194, 320, 394 |
| MmeI | TCCRAC | 2 cut(s) | 39, 168 |
| MnlI | CCTC | 2 cut(s) | 206, 283 |
| MroXI | GAANNNNTTC | 1 cut(s) | 21 |
| MseI | TTAA | 1 cut(s) | 300 |
| MslI | CAYNNNNRTG | 1 cut(s) | 36 |
| MspI | CCGG | 1 cut(s) | 201 |
| MspR9I | CCNGG | 1 cut(s) | 202 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 141, 262 |
| NciI | CCSGG | 1 cut(s) | 202 |
| NcoI | CCATGG | 1 cut(s) | 31 |
| NdeII | GATC | 3 cut(s) | 136, 333, 532 |
| NlaIII | CATG | 1 cut(s) | 35 |
| NmuCI | GTSAC | 1 cut(s) | 357 |
| PdmI | GAANNNNTTC | 1 cut(s) | 21 |
| PleI | GAGTC | 3 cut(s) | 193, 320, 394 |
| PpsI | GAGTC | 3 cut(s) | 193, 320, 394 |
| Psp1406I | AACGTT | 1 cut(s) | 154 |
| PsuI | RGATCY | 1 cut(s) | 333 |
| RsaI | GTAC | 1 cut(s) | 366 |
| RsaNI | GTAC | 1 cut(s) | 365 |
| RseI | CAYNNNNRTG | 1 cut(s) | 36 |
| SaqAI | TTAA | 1 cut(s) | 300 |
| Sau3AI | GATC | 3 cut(s) | 136, 333, 532 |
| ScaI | AGTACT | 1 cut(s) | 366 |
| SchI | GAGTC | 3 cut(s) | 194, 320, 394 |
| ScrFI | CCNGG | 1 cut(s) | 202 |
| SfaNI | GCATC | 3 cut(s) | 182, 243, 408 |
| SfcI | CTRYAG | 1 cut(s) | 145 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 36 |
| Sse9I | AATT | 3 cut(s) | 78, 178, 297 |
| SsiI | CCGC | 2 cut(s) | 421, 494 |
| SspMI | CTAG | 5 cut(s) | 102, 342, 384, 390, 542 |
| StyD4I | CCNGG | 1 cut(s) | 200 |
| StyI | CCWWGG | 2 cut(s) | 31, 101 |
| TaiI | ACGT | 1 cut(s) | 157 |
| TasI | AATT | 3 cut(s) | 78, 178, 297 |
| TatI | WGTACW | 1 cut(s) | 364 |
| Tru1I | TTAA | 1 cut(s) | 300 |
| Tru9I | TTAA | 1 cut(s) | 300 |
| TseFI | GTSAC | 1 cut(s) | 357 |
| Tsp45I | GTSAC | 1 cut(s) | 357 |
| TspDTI | ATGAA | 2 cut(s) | 222, 222 |
| XapI | RAATTY | 1 cut(s) | 178 |
| XmaJI | CCTAGG | 1 cut(s) | 101 |
| XmiI | GTMKAC | 1 cut(s) | 462 |
| XmnI | GAANNNNTTC | 1 cut(s) | 21 |
| XspI | CTAG | 5 cut(s) | 102, 342, 384, 390, 542 |
| ZrmI | AGTACT | 1 cut(s) | 366 |