Rmu_sc0008835.1_g000011

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008835.1
OG0000169
Physical Location & Seq
Reverse (-)
48021 .. 50450
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008835.1_g000011.1.cds

Sequence Viewer

Length: 981 bp
atggcttccatcgacaccgtcaccgctagctttgcagcctccttgactcttgctgagggtggtcaagcccctgaccttggaaaaattggtggaggtctggtgaagaaatcctcccaatcttttcttcttgggaaacctcttacttgcaaacctgtggattctaccactttcaaatctcatttccttcgtacttggatggtggaaagggaatttagggttcaggaaaagaatgacaatctattcctattctctttcggatcagcccgagaccgaaataaggttctcaaaggtggagtttggtgttttgatcgtgctccagtttgcctagaggagtacgacagagttttacccattgctgaagtttccatgaaacatttccccaaccccaattctagctctgtccaacccaactctgttccaatttccgaccaacccaactccgatccaatttccaaccaacctgcctccactgagctccactcccaacccgcctaccccaaattctccagctctttgcctttcccaacccaccctcccaaccaggacccaccggaggagctttcttcagacccaacagcgccgggaggcccacccataacatccactctgaacatcatcccatttccggtgaaagccccaattccccaaattcatcacgcaaagctcgttgatggtaagcagtttgcccaaaatggcagcatttacgatctccgatacgtcctcgatggagtggagatcggacaacggagatccgatagactttatgaatggaatttgggcattttgcacggtggagaatcccatggaggtggaggcaagagtggagatgtggttgcagatggaggcccattcgagccattcgaggattttgagggtttcaaattggagggaatgggcgaggaagagttagtgacggcggcggtggcggtggcagtgggtttggggaagagagggatgagctatacttttggacaaggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

326

Amino Acids

35.14

Weight (kDa)

5.41

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 469
AciI CCGC 5 cut(s) 24, 489, 917, 920, 926
AclWI GGATC 3 cut(s) 265, 437, 744
AcsI RAATTY 4 cut(s) 209, 500, 648, 772
AcuI CTGAAG 2 cut(s) 378, 549
AfaI GTAC 2 cut(s) 190, 335
AfiI CCNNNNNNNGG 4 cut(s) 77, 277, 553, 625
AgsI TTSAA 2 cut(s) 172, 880
AjnI CCWGG 1 cut(s) 540
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 7 cut(s) 30, 396, 475, 510, 559, 664, 960
AluI AGCT 7 cut(s) 30, 396, 475, 510, 559, 664, 960
Alw21I GWGCWC 2 cut(s) 316, 477
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 3 cut(s) 265, 437, 744
Ama87I CYCGRG 1 cut(s) 264
AoxI GGCC 2 cut(s) 586, 844
ApeKI GCWGC 2 cut(s) 35, 696
ApoI RAATTY 4 cut(s) 209, 500, 648, 772
Asp700I GAANNNNTTC 1 cut(s) 374
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 3 cut(s) 544, 587, 845
AsuC2I CCSGG 1 cut(s) 582
AsuHPI GGTGA 3 cut(s) 13, 112, 640
AsuNHI GCTAGC 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 264
AvaII GGWCC 1 cut(s) 544
BanII GRGCYC 1 cut(s) 477
Bbv12I GWGCWC 2 cut(s) 316, 477
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 47, 708
BccI CCATC 5 cut(s) 17, 190, 665, 719, 833
BceAI ACGGC 1 cut(s) 930
BciT130I CCWGG 1 cut(s) 542
BcnI CCSGG 1 cut(s) 582
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 3 cut(s) 27, 326, 393
BfoI RGCGCY 1 cut(s) 581
BfuAI ACCTGC 1 cut(s) 469
BisI GCNGC 3 cut(s) 36, 697, 918
BlsI GCNGC 3 cut(s) 37, 698, 919
Bme1390I CCNGG 2 cut(s) 542, 582
Bme18I GGWCC 1 cut(s) 544
BmeT110I CYCGRG 1 cut(s) 264
BmgT120I GGNCC 3 cut(s) 544, 587, 845
BmiI GGNNCC 1 cut(s) 546
BmrFI CCNGG 2 cut(s) 542, 582
BmtI GCTAGC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpmI CTGGAG 2 cut(s) 300, 490
Bpu10I CCTNAGC 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 582
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 76, 802
BsaWI WCCGGW 2 cut(s) 550, 625
BsaXI ACNNNNNCTCC 6 cut(s) 84, 114, 517, 547, 816, 846
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 277, 553, 625
Bse1I ACTGG 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 542
BseDI CCNNGG 2 cut(s) 76, 802
BseGI GGATG 4 cut(s) 201, 599, 615, 960
BseLI CCNNNNNNNGG 4 cut(s) 77, 277, 553, 625
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 2 cut(s) 45, 462
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 2 cut(s) 344, 569
BseXI GCAGC 2 cut(s) 47, 708
BshFI GGCC 2 cut(s) 588, 846
BsiHKAI GWGCWC 2 cut(s) 316, 477
BsiHKCI CYCGRG 1 cut(s) 264
BsiSI CCGG 3 cut(s) 551, 581, 626
BslI CCNNNNNNNGG 4 cut(s) 77, 277, 553, 625
BsmAI GTCTC 1 cut(s) 261
BsnI GGCC 2 cut(s) 588, 846
Bso31I GGTCTC 1 cut(s) 261
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 316, 477
Bsp143I GATC 6 cut(s) 257, 307, 442, 706, 735, 749
Bsp19I CCATGG 1 cut(s) 802
BspACI CCGC 5 cut(s) 24, 489, 917, 920, 926
BspANI GGCC 2 cut(s) 588, 846
BspCNI CTCAG 2 cut(s) 46, 463
BspLI GGNNCC 1 cut(s) 546
BspMI ACCTGC 1 cut(s) 469
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 3 cut(s) 265, 437, 744
BspTNI GGTCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 76, 802
BssMI GATC 6 cut(s) 257, 307, 442, 706, 735, 749
BssT1I CCWWGG 2 cut(s) 76, 802
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 2 cut(s) 19, 791
Bst6I CTCTTC 2 cut(s) 897, 941
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 54, 471
BstDSI CCRYGG 1 cut(s) 802
BstF5I GGATG 4 cut(s) 201, 599, 615, 960
BstH2I RGCGCY 1 cut(s) 581
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 6 cut(s) 260, 310, 445, 709, 738, 752
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 6 cut(s) 257, 307, 442, 706, 735, 749
BstMWI GCNNNNNNNGC 2 cut(s) 32, 923
BstNI CCWGG 1 cut(s) 542
BstSCI CCNGG 2 cut(s) 540, 580
BstV1I GCAGC 2 cut(s) 47, 708
BstX2I RGATCY 1 cut(s) 749
BstXI CCANNNNNNTGG 1 cut(s) 809
BstYI RGATCY 1 cut(s) 749
BsuRI GGCC 2 cut(s) 588, 846
BtgI CCRYGG 1 cut(s) 802
BtsCI GGATG 4 cut(s) 201, 599, 615, 960
BtsI GCAGTG 1 cut(s) 939
BtsIMutI CAGTG 2 cut(s) 468, 939
BveI ACCTGC 1 cut(s) 469
Cac8I GCNNGC 1 cut(s) 28
CfoI GCGC 1 cut(s) 580
Cfr13I GGNCC 3 cut(s) 544, 587, 845
Csp6I GTAC 2 cut(s) 189, 334
CviAII CATG 2 cut(s) 367, 803
CviQI GTAC 2 cut(s) 189, 334
DdeI CTNAG 2 cut(s) 54, 471
DpnI GATC 6 cut(s) 259, 309, 444, 708, 737, 751
DpnII GATC 6 cut(s) 257, 307, 442, 706, 735, 749
Eam1104I CTCTTC 2 cut(s) 897, 941
EarI CTCTTC 2 cut(s) 897, 941
Ecl136II GAGCTC 1 cut(s) 475
Eco130I CCWWGG 2 cut(s) 76, 802
Eco24I GRGCYC 1 cut(s) 477
Eco31I GGTCTC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 544
Eco53kI GAGCTC 1 cut(s) 475
Eco57I CTGAAG 2 cut(s) 378, 549
Eco88I CYCGRG 1 cut(s) 264
EcoICRI GAGCTC 1 cut(s) 475
EcoO109I RGGNCCY 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 540
EcoT14I CCWWGG 2 cut(s) 76, 802
EcoT38I GRGCYC 1 cut(s) 477
ErhI CCWWGG 2 cut(s) 76, 802
FaeI CATG 2 cut(s) 370, 806
FaiI YATR 5 cut(s) 368, 596, 765, 804, 963
FatI CATG 2 cut(s) 366, 802
FauI CCCGC 1 cut(s) 496
Fnu4HI GCNGC 3 cut(s) 36, 697, 918
FokI GGATG 4 cut(s) 208, 586, 602, 967
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 3 cut(s) 36, 697, 918
FspBI CTAG 3 cut(s) 27, 326, 393
GlaI GCGC 1 cut(s) 579
GluI GCNGC 3 cut(s) 36, 697, 918
GsuI CTGGAG 2 cut(s) 300, 490
HaeII RGCGCY 1 cut(s) 581
HaeIII GGCC 2 cut(s) 588, 846
HapII CCGG 3 cut(s) 551, 581, 626
HhaI GCGC 1 cut(s) 580
Hin1II CATG 2 cut(s) 370, 806
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HinfI GANTC 3 cut(s) 46, 158, 797
HpaII CCGG 3 cut(s) 551, 581, 626
HphI GGTGA 3 cut(s) 13, 112, 640
Hpy188I TCNGA 8 cut(s) 257, 427, 442, 568, 609, 713, 740, 754
Hpy188III TCNNGA 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 2 cut(s) 19, 791
HpyCH4IV ACGT 1 cut(s) 717
HpyCH4V TGCA 4 cut(s) 35, 147, 787, 836
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 923
HpyF3I CTNAG 2 cut(s) 54, 471
HpySE526I ACGT 1 cut(s) 717
Hsp92II CATG 2 cut(s) 370, 806
HspAI GCGC 1 cut(s) 578
Kzo9I GATC 6 cut(s) 257, 307, 442, 706, 735, 749
LmnI GCTCC 3 cut(s) 319, 480, 556
Lsp1109I GCAGC 2 cut(s) 47, 708
MaeI CTAG 3 cut(s) 27, 326, 393
MaeII ACGT 1 cut(s) 717
MaeIII GTNAC 2 cut(s) 19, 910
MalI GATC 6 cut(s) 259, 309, 444, 708, 737, 751
MboI GATC 6 cut(s) 257, 307, 442, 706, 735, 749
MboII GAAGA 5 cut(s) 115, 116, 555, 914, 958
MflI RGATCY 1 cut(s) 749
MhlI GDGCHC 2 cut(s) 316, 477
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 3 cut(s) 427, 450, 477
MroXI GAANNNNTTC 1 cut(s) 374
MslI CAYNNNNRTG 1 cut(s) 807
MspI CCGG 3 cut(s) 551, 581, 626
MspR9I CCNGG 2 cut(s) 542, 582
MvaI CCWGG 1 cut(s) 542
MwoI GCNNNNNNNGC 2 cut(s) 32, 923
NciI CCSGG 1 cut(s) 582
NcoI CCATGG 1 cut(s) 802
NdeII GATC 6 cut(s) 257, 307, 442, 706, 735, 749
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 2 cut(s) 370, 806
NlaIV GGNNCC 1 cut(s) 546
NmuCI GTSAC 2 cut(s) 19, 910
PcsI WCGNNNNNNNCGW 2 cut(s) 663, 858
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 158, 797
PflFI GACNNNGTC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 37, 698, 919
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 544
Psp124BI GAGCTC 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 540
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 1 cut(s) 546
PspPI GGNCC 3 cut(s) 544, 587, 845
PspPPI RGGWCCY 1 cut(s) 544
PsuI RGATCY 1 cut(s) 749
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 2 cut(s) 190, 335
RsaNI GTAC 2 cut(s) 189, 334
RseI CAYNNNNRTG 1 cut(s) 807
SacI GAGCTC 1 cut(s) 477
SatI GCNGC 3 cut(s) 36, 697, 918
Sau3AI GATC 6 cut(s) 257, 307, 442, 706, 735, 749
Sau96I GGNCC 3 cut(s) 544, 587, 845
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 2 cut(s) 542, 582
SduI GDGCHC 2 cut(s) 316, 477
SinI GGWCC 1 cut(s) 544
SmiMI CAYNNNNRTG 1 cut(s) 807
SsiI CCGC 5 cut(s) 24, 489, 917, 920, 926
SspMI CTAG 3 cut(s) 27, 326, 393
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 2 cut(s) 540, 580
StyI CCWWGG 2 cut(s) 76, 802
TaaI ACNGT 2 cut(s) 19, 791
TaiI ACGT 1 cut(s) 720
TaqI TCGA 4 cut(s) 12, 723, 852, 861
TaqII GACCGA 1 cut(s) 285
TauI GCSGC 1 cut(s) 920
TfiI GAWTC 2 cut(s) 158, 797
TscAI CASTG 2 cut(s) 475, 939
TseFI GTSAC 2 cut(s) 19, 910
TseI GCWGC 2 cut(s) 35, 696
Tsp45I GTSAC 2 cut(s) 19, 910
TspDTI ATGAA 3 cut(s) 383, 641, 780
TspGWI ACGGA 1 cut(s) 760
TspRI CASTG 2 cut(s) 475, 939
Tth111I GACNNNGTC 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 544
XapI RAATTY 4 cut(s) 209, 500, 648, 772
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 3 cut(s) 27, 326, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.