Rh3BG176200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000169
Physical Location & Seq
Reverse (-)
15233978 .. 15234334
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG176200.1

Sequence Viewer

Length: 357 bp
ATGAAACAGAGAGCCCTCAAACTTTCTCACAATTTCCTAAAAAACTCACTTCCTGCCTCACTGTTCCAATTCAAACCCAGCAACATATTGATGGCAATTATCTCAACATCGCATGGATTGATCTTCACAGTACCCAATTCTTTCTCCCTCTTTCTCATAGCTTCCAAATCGACTTCTAAGGTGTCAGCAATGGAAGCCATGGCCTTCTGGAATCTTGTCGAATCGACCTGGCGATCTTCGACGCGGTCAGTGAGCTTATCGAAGGCTTTGCTCTGTTGCTGCAAGTCCTTGGAGTCCTCGATCCTATCAATTCCTTCTTCGGGTCATGAAGGTTGGGTTCGATCTGAGAGACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.04

Weight (kDa)

10.04

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 244
AciI CCGC 1 cut(s) 244
AclWI GGATC 1 cut(s) 295
AfaI GTAC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 320
AgsI TTSAA 1 cut(s) 73
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 2 cut(s) 161, 255
AluI AGCT 2 cut(s) 161, 255
Alw26I GTCTC 1 cut(s) 343
AlwI GGATC 1 cut(s) 295
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 279
BanII GRGCYC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 343
BfmI CTRYAG 1 cut(s) 353
BisI GCNGC 1 cut(s) 280
BlsI GCNGC 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 229
BsaJI CCNNGG 2 cut(s) 198, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 198, 288
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 336
BseXI GCAGC 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 343
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 4 cut(s) 120, 233, 300, 341
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 1 cut(s) 244
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 1 cut(s) 244
BspHI TCATGA 1 cut(s) 325
BspPI GGATC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 198, 288
BssMI GATC 4 cut(s) 120, 233, 300, 341
BssT1I CCWWGG 2 cut(s) 198, 288
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 3 cut(s) 63, 130, 354
BstDEI CTNAG 2 cut(s) 177, 345
BstDSI CCRYGG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 244
BstKTI GATC 4 cut(s) 123, 236, 303, 344
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 4 cut(s) 120, 233, 300, 341
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 353
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 266
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 198
BtgZI GCGATG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 59, 255
CciI TCATGA 1 cut(s) 325
CseI GACGC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 131
CviAII CATG 3 cut(s) 113, 199, 326
CviJI RGCY 6 cut(s) 14, 161, 197, 203, 255, 266
CviKI_1 RGCY 6 cut(s) 14, 161, 197, 203, 255, 266
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 2 cut(s) 177, 345
DpnI GATC 4 cut(s) 122, 235, 302, 343
DpnII GATC 4 cut(s) 120, 233, 300, 341
Eco130I CCWWGG 2 cut(s) 198, 288
Eco24I GRGCYC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 2 cut(s) 198, 288
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 2 cut(s) 198, 288
FaeI CATG 3 cut(s) 116, 202, 329
FaiI YATR 5 cut(s) 86, 114, 158, 200, 327
FatI CATG 3 cut(s) 112, 198, 325
Fnu4HI GCNGC 1 cut(s) 280
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 280
GluI GCNGC 1 cut(s) 280
GsaI CCCAGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 203
HgaI GACGC 1 cut(s) 250
Hin1II CATG 3 cut(s) 116, 202, 329
HinfI GANTC 3 cut(s) 211, 221, 293
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 2 cut(s) 208, 326
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 4 cut(s) 214, 256, 323, 324
HpyCH4III ACNGT 3 cut(s) 63, 130, 354
HpyCH4V TGCA 1 cut(s) 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 177, 345
Hsp92II CATG 3 cut(s) 116, 202, 329
Kzo9I GATC 4 cut(s) 120, 233, 300, 341
LpnPI CCDG 5 cut(s) 66, 91, 193, 214, 241
Lsp1109I GCAGC 1 cut(s) 266
MalI GATC 4 cut(s) 122, 235, 302, 343
MboI GATC 4 cut(s) 120, 233, 300, 341
MboII GAAGA 3 cut(s) 115, 228, 309
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 5 cut(s) 31, 68, 96, 136, 309
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 4 cut(s) 26, 67, 158, 307
MslI CAYNNNNRTG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 229
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 194
NcoI CCATGG 1 cut(s) 198
NdeII GATC 4 cut(s) 120, 233, 300, 341
NlaIII CATG 3 cut(s) 116, 202, 329
PagI TCATGA 1 cut(s) 325
PfeI GAWTC 2 cut(s) 211, 221
PflFI GACNNNGTC 1 cut(s) 244
PkrI GCNGC 1 cut(s) 281
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 1 cut(s) 227
PsyI GACNNNGTC 1 cut(s) 244
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 89
SatI GCNGC 1 cut(s) 280
Sau3AI GATC 4 cut(s) 120, 233, 300, 341
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 229
SduI GDGCHC 1 cut(s) 16
SetI ASST 5 cut(s) 163, 183, 230, 257, 334
SfcI CTRYAG 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 89
Sse9I AATT 5 cut(s) 31, 68, 96, 136, 309
SsiI CCGC 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 2 cut(s) 198, 288
TaaI ACNGT 3 cut(s) 63, 130, 354
TaqI TCGA 7 cut(s) 170, 219, 224, 239, 260, 299, 340
TasI AATT 5 cut(s) 31, 68, 96, 136, 309
TfiI GAWTC 2 cut(s) 211, 221
TscAI CASTG 2 cut(s) 66, 255
TseI GCWGC 1 cut(s) 279
TspDTI ATGAA 2 cut(s) 17, 342
TspRI CASTG 2 cut(s) 66, 255
Tth111I GACNNNGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.