Rmu_sc0003689.1_g000014

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003689.1
OG0000169
Physical Location & Seq
Forward (+)
74841 .. 76144
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003689.1_g000014.1.cds

Sequence Viewer

Length: 987 bp
atggctttaatcgacgctattattgccatttttgctgcctctctagcacttgccaatgggggtgacgcctcggatctgggaaacatcaaaggaggttttgttcgccgaacttctcagtcttttcttctcggaaaaccactcactcgcaaaccagttgatcctgctactttcaaatcccatttcattcggacatggatggtggagaatgaatatacgatccaggaaggggcggatagccgtttcctattttcctttgattctctctgtgatcagaacaaagtactcaagggtggtgtgtggtgctttgataaggctctggtctgtctagaggaatatgatggattcctccctattgctgacgtccctatgaagcatatcagagtttggtttaggttttctggcatccctcctctctatgaggaacttgacaacttcatactcaccaggaatcttttgggaggctatttggactatgacaagaaggaattttggaaaggtaccatccatattttgttctctcatgacatctccaaacttctgagatttgcttatgccctcttctaccttgctgaagaagaagaagccggtcatttggagtttagaacgctcgacttctgggtctactatgaaggaggataccatgcacaccacactgctatccctgccatgcaaggtgagccgaagacaactctgacctataagaagagaggtcgacaggaagcaagtgttccttcaccgaagaagttcaaaactatacttggtggcaagcttctatcccttcatgctgatgctcttggtttggttgaagttgaggatgatgttgcaattgtgacactgaagaagaagatgggtaggctgcttgggagtaagaacaagggccctcggactcaaaagaaggtggggatgacttctctacacctcacttatccatctgctactactgcccaggcagctggccctaaaggtaagggcaaggggaaactttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

328

Amino Acids

36.66

Weight (kDa)

9.15

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 617
AatII GACGTC 1 cut(s) 363
Acc65I GGTACC 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 497
AccI GTMKAC 2 cut(s) 621, 712
AciI CCGC 1 cut(s) 230
AclWI GGATC 3 cut(s) 81, 152, 211
AcsI RAATTY 1 cut(s) 485
AcuI CTGAAG 2 cut(s) 591, 857
AcyI GRCGYC 2 cut(s) 66, 360
AfaI GTAC 2 cut(s) 282, 499
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 3 cut(s) 172, 748, 806
AjnI CCWGG 3 cut(s) 219, 443, 945
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 2 cut(s) 769, 953
AluI AGCT 2 cut(s) 769, 953
AlwI GGATC 3 cut(s) 81, 152, 211
AoxI GGCC 2 cut(s) 877, 955
ApaI GGGCCC 1 cut(s) 881
ApeKI GCWGC 3 cut(s) 35, 856, 950
ApoI RAATTY 1 cut(s) 485
Asp700I GAANNNNTTC 1 cut(s) 743
Asp718I GGTACC 1 cut(s) 497
AspS9I GGNCC 3 cut(s) 877, 878, 956
AsuHPI GGTGA 4 cut(s) 74, 433, 686, 726
BaeGI GKGCMC 1 cut(s) 881
BanI GGYRCC 1 cut(s) 497
BanII GRGCYC 1 cut(s) 881
BbsI GAAGAC 1 cut(s) 689
BbvI GCAGC 3 cut(s) 22, 843, 962
BccI CCATC 5 cut(s) 190, 332, 509, 841, 937
BceAI ACGGC 1 cut(s) 222
BciT130I CCWGG 3 cut(s) 221, 445, 947
BciVI GTATCC 1 cut(s) 629
BclI TGATCA 1 cut(s) 268
BfaI CTAG 2 cut(s) 44, 326
BfuI GTATCC 1 cut(s) 629
BisI GCNGC 3 cut(s) 36, 857, 951
BlsI GCNGC 3 cut(s) 37, 858, 952
BmcAI AGTACT 1 cut(s) 282
Bme1390I CCNGG 3 cut(s) 221, 445, 947
BmgT120I GGNCC 3 cut(s) 877, 878, 956
BmiI GGNNCC 2 cut(s) 499, 879
BmrFI CCNGG 3 cut(s) 221, 445, 947
BmsI GCATC 2 cut(s) 411, 778
BpiI GAAGAC 1 cut(s) 689
BpuEI CTTGAG 1 cut(s) 269
BsaHI GRCGYC 2 cut(s) 66, 360
BsaJI CCNNGG 3 cut(s) 69, 881, 945
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse118I RCCGGY 1 cut(s) 584
Bse1I ACTGG 1 cut(s) 152
BseBI CCWGG 3 cut(s) 221, 445, 947
BseDI CCNNGG 3 cut(s) 69, 881, 945
BseGI GGATG 5 cut(s) 201, 402, 501, 820, 909
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 2 cut(s) 128, 530
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 399
BseSI GKGCMC 1 cut(s) 881
BseXI GCAGC 3 cut(s) 22, 843, 962
BshFI GGCC 2 cut(s) 879, 957
BshNI GGYRCC 1 cut(s) 497
BsiSI CCGG 1 cut(s) 585
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 2 cut(s) 879, 957
Bsp120I GGGCCC 1 cut(s) 877
Bsp1286I GDGCHC 1 cut(s) 881
Bsp143I GATC 4 cut(s) 73, 157, 216, 268
BspACI CCGC 1 cut(s) 230
BspANI GGCC 2 cut(s) 879, 957
BspCNI CTCAG 2 cut(s) 127, 531
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 499, 879
BspPI GGATC 3 cut(s) 81, 152, 211
BspT107I GGYRCC 1 cut(s) 497
BsrFI RCCGGY 1 cut(s) 584
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 584
BssECI CCNNGG 3 cut(s) 69, 881, 945
BssMI GATC 4 cut(s) 73, 157, 216, 268
BssNI GRCGYC 2 cut(s) 66, 360
Bst2UI CCWGG 3 cut(s) 221, 445, 947
Bst6I CTCTTC 2 cut(s) 563, 698
BstACI GRCGYC 2 cut(s) 66, 360
BstC8I GCNNGC 2 cut(s) 767, 955
BstDEI CTNAG 2 cut(s) 114, 539
BstF5I GGATG 5 cut(s) 201, 402, 501, 820, 909
BstKTI GATC 4 cut(s) 76, 160, 219, 271
BstMBI GATC 4 cut(s) 73, 157, 216, 268
BstMWI GCNNNNNNNGC 7 cut(s) 23, 32, 44, 662, 676, 941, 950
BstNI CCWGG 3 cut(s) 221, 445, 947
BstSCI CCNGG 3 cut(s) 219, 443, 945
BstSLI GKGCMC 1 cut(s) 881
BstV1I GCAGC 3 cut(s) 22, 843, 962
BstV2I GAAGAC 1 cut(s) 689
BstX2I RGATCY 1 cut(s) 73
BstXI CCANNNNNNTGG 1 cut(s) 953
BstYI RGATCY 1 cut(s) 73
BsuI GTATCC 1 cut(s) 629
BsuRI GGCC 2 cut(s) 879, 957
BtsCI GGATG 5 cut(s) 201, 402, 501, 820, 909
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 2 cut(s) 651, 833
Cac8I GCNNGC 2 cut(s) 767, 955
CciI TCATGA 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 584
Cfr13I GGNCC 3 cut(s) 877, 878, 956
CseI GACGC 2 cut(s) 23, 74
Csp6I GTAC 2 cut(s) 281, 498
CviAII CATG 5 cut(s) 192, 521, 641, 667, 782
CviQI GTAC 2 cut(s) 281, 498
DdeI CTNAG 2 cut(s) 114, 539
DpnI GATC 4 cut(s) 75, 159, 218, 270
DpnII GATC 4 cut(s) 73, 157, 216, 268
DrdI GACNNNNNNGTC 1 cut(s) 617
DseDI GACNNNNNNGTC 1 cut(s) 617
Eam1104I CTCTTC 2 cut(s) 563, 698
EarI CTCTTC 2 cut(s) 563, 698
EciI GGCGGA 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 881
Eco57I CTGAAG 2 cut(s) 591, 857
EcoO109I RGGNCCY 2 cut(s) 877, 878
EcoRII CCWGG 3 cut(s) 219, 443, 945
EcoT38I GRGCYC 1 cut(s) 881
FaeI CATG 5 cut(s) 195, 524, 644, 670, 785
FalI AAGNNNNNCTT 2 cut(s) 715, 747
FaqI GGGAC 1 cut(s) 347
FatI CATG 5 cut(s) 191, 520, 640, 666, 781
FbaI TGATCA 1 cut(s) 268
FblI GTMKAC 2 cut(s) 621, 712
Fnu4HI GCNGC 3 cut(s) 36, 857, 951
FokI GGATG 5 cut(s) 208, 389, 488, 827, 916
FriOI GRGCYC 1 cut(s) 881
Fsp4HI GCNGC 3 cut(s) 36, 857, 951
FspBI CTAG 2 cut(s) 44, 326
GluI GCNGC 3 cut(s) 36, 857, 951
HaeIII GGCC 2 cut(s) 879, 957
HapII CCGG 1 cut(s) 585
HgaI GACGC 2 cut(s) 23, 74
Hin1I GRCGYC 2 cut(s) 66, 360
Hin1II CATG 5 cut(s) 195, 524, 644, 670, 785
HincII GTYRAC 1 cut(s) 713
HindII GTYRAC 1 cut(s) 713
HindIII AAGCTT 1 cut(s) 767
HinfI GANTC 4 cut(s) 257, 342, 448, 886
HpaII CCGG 1 cut(s) 585
HphI GGTGA 4 cut(s) 74, 433, 686, 726
Hpy166II GTNNAC 2 cut(s) 622, 713
Hpy188I TCNGA 8 cut(s) 73, 131, 189, 273, 380, 540, 693, 885
Hpy188III TCNNGA 2 cut(s) 326, 521
Hpy8I GTNNAC 2 cut(s) 622, 713
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 6 cut(s) 218, 475, 623, 741, 788, 889
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 3 cut(s) 644, 670, 824
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 32, 44, 662, 676, 941, 950
HpyF3I CTNAG 2 cut(s) 114, 539
HpySE526I ACGT 1 cut(s) 360
Hsp92I GRCGYC 2 cut(s) 66, 360
Hsp92II CATG 5 cut(s) 195, 524, 644, 670, 785
KpnI GGTACC 1 cut(s) 501
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 4 cut(s) 73, 157, 216, 268
Lsp1109I GCAGC 3 cut(s) 22, 843, 962
LweI GCATC 2 cut(s) 411, 778
MaeI CTAG 2 cut(s) 44, 326
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 62, 829
MalI GATC 4 cut(s) 75, 159, 218, 270
MboI GATC 4 cut(s) 73, 157, 216, 268
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 881
MluCI AATT 2 cut(s) 485, 825
MlyI GAGTC 1 cut(s) 880
MroXI GAANNNNTTC 1 cut(s) 743
MseI TTAA 2 cut(s) 8, 985
MslI CAYNNNNRTG 1 cut(s) 786
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 1 cut(s) 585
MspR9I CCNGG 3 cut(s) 221, 445, 947
MunI CAATTG 1 cut(s) 825
MvaI CCWGG 3 cut(s) 221, 445, 947
MwoI GCNNNNNNNGC 7 cut(s) 23, 32, 44, 662, 676, 941, 950
NdeII GATC 4 cut(s) 73, 157, 216, 268
NlaIII CATG 5 cut(s) 195, 524, 644, 670, 785
NlaIV GGNNCC 2 cut(s) 499, 879
NmuCI GTSAC 2 cut(s) 62, 829
PagI TCATGA 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 743
PfeI GAWTC 3 cut(s) 257, 342, 448
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 3 cut(s) 37, 858, 952
PleI GAGTC 1 cut(s) 880
PpsI GAGTC 1 cut(s) 880
Psp6I CCWGG 3 cut(s) 219, 443, 945
PspGI CCWGG 3 cut(s) 219, 443, 945
PspN4I GGNNCC 2 cut(s) 499, 879
PspOMI GGGCCC 1 cut(s) 877
PspPI GGNCC 3 cut(s) 877, 878, 956
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 2 cut(s) 282, 499
RsaNI GTAC 2 cut(s) 281, 498
RseI CAYNNNNRTG 1 cut(s) 786
SalI GTCGAC 1 cut(s) 711
SaqAI TTAA 2 cut(s) 8, 985
SatI GCNGC 3 cut(s) 36, 857, 951
Sau3AI GATC 4 cut(s) 73, 157, 216, 268
Sau96I GGNCC 3 cut(s) 877, 878, 956
ScaI AGTACT 1 cut(s) 282
SchI GAGTC 1 cut(s) 880
ScrFI CCNGG 3 cut(s) 221, 445, 947
SduI GDGCHC 1 cut(s) 881
SfaNI GCATC 2 cut(s) 411, 778
SmiMI CAYNNNNRTG 1 cut(s) 786
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 2 cut(s) 485, 825
SsiI CCGC 1 cut(s) 230
SspMI CTAG 2 cut(s) 44, 326
StyD4I CCNGG 3 cut(s) 219, 443, 945
TaiI ACGT 1 cut(s) 363
TaqI TCGA 3 cut(s) 12, 609, 712
TasI AATT 2 cut(s) 485, 825
TatI WGTACW 1 cut(s) 280
TfiI GAWTC 3 cut(s) 257, 342, 448
Tru1I TTAA 2 cut(s) 8, 985
Tru9I TTAA 2 cut(s) 8, 985
TscAI CASTG 2 cut(s) 658, 840
TseFI GTSAC 2 cut(s) 62, 829
TseI GCWGC 3 cut(s) 35, 856, 950
Tsp45I GTSAC 2 cut(s) 62, 829
TspDTI ATGAA 6 cut(s) 172, 222, 383, 424, 642, 770
TspRI CASTG 2 cut(s) 658, 840
XapI RAATTY 1 cut(s) 485
XbaI TCTAGA 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XmiI GTMKAC 2 cut(s) 621, 712
XmnI GAANNNNTTC 1 cut(s) 743
XspI CTAG 2 cut(s) 44, 326
ZraI GACGTC 1 cut(s) 361
ZrmI AGTACT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.