Rmu_sc0006674.1_g000020

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006674.1
OG0000169
Physical Location & Seq
Forward (+)
99938 .. 101236
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006674.1_g000020.1.cds

Sequence Viewer

Length: 1299 bp
atggcatccattgacgcggtaacgacgagttttgctgcctcacttgccctggccgaaaggggacgcgcccctgacctggggaagatcggcggaggtccagtgcggaagtcctcccaatcttttctcctcggaaagcctttgactcggaaacccatagacccaaaggcattcatgtctcatcacttccaccgaacctggatggtggataaggattttagggttcaagagtgtcctggggacctgttcttgttctctttcgctgctgcacttgatcgaaacaaggttcttcaagggggcgtctggtgttttgaccgagccccggtcttttttgaagtgtacgatggagtcaagcctctacatgaacttccgtttaaacatctgcagatctggactagggtttctggcatacctcatctgtatgaagaacccgagaatctcactttgattggcaaccttttgggcggttttttggagtatgacaagaaggaatttaagaagggggtgattagggttttattcattcatgacatatctaaaccgatcctgcaggaaatacaagtcttcctagatactggggttgaacccatattgcagtttcaattcgagcatctgtgggggagatgcactcaatgtggtttgctcacacatgctggcctttcttgtgaggaacccactgcagtaaaccctacacctagggttttacactttcccggagtttcgacctcagggaattcctttgccttctctgctaaacatcagggataccttctctctccttccccgaccatcccaaggaagaagcagcctggttttcgtcgagtggagcgcccgacctcagagctttcttctcccagtgagtcggctccaacagtagtcaatactggggtggcagccattactttgtcgcacggtatagagggtaatgaaagtctaggtgaggttcccgaactggttattcctagtgacattgttattactccaggtacacagaagcaccaatctgttttgccgtccaaaaagcgggagcgtggtggtgcttgccatcctagtcccaagaagtttaaaacaatcttgggtggcaagattccaacactgcctgctgaggcacttggtctccttgaggaggacggtgacctcactttggtttcgttgaaaaagaagtctggtaggcctcttggaagcaataataagactcaacgtgcaaacaagaagctggatggtactcccctgaagattacttatcctactagaactggaactgatcctagccctagggacaagggcaaaggaaagatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

432

Amino Acids

47.32

Weight (kDa)

9.39

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 17, 66
AciI CCGC 5 cut(s) 17, 90, 103, 462, 1021
AclWI GGATC 2 cut(s) 535, 1256
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 2 cut(s) 488, 730
AcuI CTGAAG 1 cut(s) 1250
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 3 cut(s) 338, 985, 1222
AfiI CCNNNNNNNGG 7 cut(s) 76, 77, 319, 792, 1020, 1123, 1141
AgsI TTSAA 6 cut(s) 224, 290, 332, 581, 599, 1153
AjnI CCWGG 6 cut(s) 48, 75, 194, 232, 805, 979
AluBI AGCT 2 cut(s) 841, 1213
AluI AGCT 2 cut(s) 841, 1213
Alw26I GTCTC 2 cut(s) 180, 1118
AlwI GGATC 2 cut(s) 535, 1256
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 3 cut(s) 51, 652, 1169
ApeKI GCWGC 5 cut(s) 35, 260, 263, 802, 890
ApoI RAATTY 2 cut(s) 488, 730
AspA2I CCTAGG 2 cut(s) 692, 1271
AspLEI GCGC 2 cut(s) 68, 828
AspS9I GGNCC 2 cut(s) 95, 238
AsuC2I CCSGG 2 cut(s) 320, 711
AsuHPI GGTGA 3 cut(s) 514, 947, 1142
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 2 cut(s) 95, 238
AvrII CCTAGG 2 cut(s) 692, 1271
AxyI CCTNAGG 1 cut(s) 724
BaeI ACNNNNGTAYC 2 cut(s) 561, 594
BanII GRGCYC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 553
BbvCI CCTCAGC 1 cut(s) 1101
BbvI GCAGC 5 cut(s) 22, 247, 250, 814, 902
BccI CCATC 5 cut(s) 193, 335, 794, 1050, 1211
BceAI ACGGC 1 cut(s) 994
BciT130I CCWGG 6 cut(s) 50, 77, 196, 234, 807, 981
BciVI GTATCC 1 cut(s) 755
BcnI CCSGG 2 cut(s) 320, 711
BcoDI GTCTC 2 cut(s) 180, 1118
BfaI CTAG 9 cut(s) 393, 566, 693, 932, 960, 1047, 1248, 1266, 1272
BfmI CTRYAG 3 cut(s) 380, 545, 675
BfoI RGCGCY 1 cut(s) 829
BfuI GTATCC 1 cut(s) 755
BglII AGATCT 1 cut(s) 384
BisI GCNGC 5 cut(s) 36, 261, 264, 803, 891
BlnI CCTAGG 2 cut(s) 692, 1271
BlsI GCNGC 5 cut(s) 37, 262, 265, 804, 892
Bme1390I CCNGG 8 cut(s) 50, 77, 196, 234, 320, 711, 807, 981
Bme18I GGWCC 2 cut(s) 95, 238
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 95, 238
BmiI GGNNCC 4 cut(s) 239, 669, 864, 942
BmrFI CCNGG 8 cut(s) 50, 77, 196, 234, 320, 711, 807, 981
BmrI ACTGGG 3 cut(s) 582, 846, 891
BmsI GCATC 3 cut(s) 14, 611, 616
BmuI ACTGGG 3 cut(s) 582, 846, 891
BpiI GAAGAC 1 cut(s) 553
BplI GAGNNNNNCTC 2 cut(s) 610, 642
BpmI CTGGAG 1 cut(s) 963
Bpu10I CCTNAGC 1 cut(s) 1101
BpuEI CTTGAG 1 cut(s) 1139
BpuMI CCSGG 2 cut(s) 320, 711
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 1118
BsaJI CCNNGG 8 cut(s) 48, 76, 127, 233, 318, 692, 791, 1271
BsaXI ACNNNNNCTCC 4 cut(s) 84, 114, 1098, 1128
Bsc4I CCNNNNNNNGG 7 cut(s) 76, 77, 319, 792, 1020, 1123, 1141
Bse1I ACTGG 6 cut(s) 98, 577, 852, 886, 954, 1258
Bse21I CCTNAGG 1 cut(s) 724
BseBI CCWGG 6 cut(s) 50, 77, 196, 234, 807, 981
BseDI CCNNGG 8 cut(s) 48, 76, 127, 233, 318, 692, 791, 1271
BseGI GGATG 5 cut(s) 5, 204, 786, 1042, 1222
BseLI CCNNNNNNNGG 7 cut(s) 76, 77, 319, 792, 1020, 1123, 1141
BseMII CTCAG 3 cut(s) 738, 849, 1092
BseNI ACTGG 6 cut(s) 98, 577, 852, 886, 954, 1258
BseRI GAGGAG 2 cut(s) 116, 1136
BseXI GCAGC 5 cut(s) 22, 247, 250, 814, 902
BsgI GTGCAG 1 cut(s) 249
Bsh1236I CGCG 2 cut(s) 17, 66
BshFI GGCC 3 cut(s) 53, 654, 1171
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 2 cut(s) 320, 711
BslFI GGGAC 4 cut(s) 75, 251, 1035, 1289
BslI CCNNNNNNNGG 7 cut(s) 76, 77, 319, 792, 1020, 1123, 1141
BsmAI GTCTC 2 cut(s) 180, 1118
BsmFI GGGAC 4 cut(s) 75, 251, 1035, 1289
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 3 cut(s) 53, 654, 1171
Bso31I GGTCTC 1 cut(s) 1118
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 5 cut(s) 84, 271, 384, 540, 1261
BspACI CCGC 5 cut(s) 17, 90, 103, 462, 1021
BspANI GGCC 3 cut(s) 53, 654, 1171
BspCNI CTCAG 3 cut(s) 737, 848, 1093
BspFNI CGCG 2 cut(s) 17, 66
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 4 cut(s) 239, 669, 864, 942
BspMAI CTGCAG 3 cut(s) 384, 549, 679
BspPI GGATC 2 cut(s) 535, 1256
BspTNI GGTCTC 1 cut(s) 1118
BsrI ACTGG 6 cut(s) 98, 577, 852, 886, 954, 1258
BssECI CCNNGG 8 cut(s) 48, 76, 127, 233, 318, 692, 791, 1271
BssMI GATC 5 cut(s) 84, 271, 384, 540, 1261
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 3 cut(s) 692, 791, 1271
Bst2UI CCWGG 6 cut(s) 50, 77, 196, 234, 807, 981
Bst4CI ACNGT 3 cut(s) 871, 911, 1130
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 3 cut(s) 652, 1039, 1098
BstDEI CTNAG 3 cut(s) 724, 835, 1101
BstEII GGTNACC 1 cut(s) 1130
BstENI CCTNNNNNAGG 1 cut(s) 1121
BstF5I GGATG 5 cut(s) 5, 204, 786, 1042, 1222
BstFNI CGCG 2 cut(s) 17, 66
BstH2I RGCGCY 1 cut(s) 829
BstHHI GCGC 2 cut(s) 68, 828
BstKTI GATC 5 cut(s) 87, 274, 387, 543, 1264
BstMAI GTCTC 2 cut(s) 180, 1118
BstMBI GATC 5 cut(s) 84, 271, 384, 540, 1261
BstMWI GCNNNNNNNGC 2 cut(s) 44, 746
BstNI CCWGG 6 cut(s) 50, 77, 196, 234, 807, 981
BstNSI RCATGY 1 cut(s) 650
BstPI GGTNACC 1 cut(s) 1130
BstSCI CCNGG 8 cut(s) 48, 75, 194, 232, 318, 709, 805, 979
BstSFI CTRYAG 3 cut(s) 380, 545, 675
BstUI CGCG 2 cut(s) 17, 66
BstV1I GCAGC 5 cut(s) 22, 247, 250, 814, 902
BstV2I GAAGAC 1 cut(s) 553
BstX2I RGATCY 1 cut(s) 384
BstYI RGATCY 1 cut(s) 384
Bsu36I CCTNAGG 1 cut(s) 724
BsuI GTATCC 1 cut(s) 755
BsuRI GGCC 3 cut(s) 53, 654, 1171
BtsCI GGATG 5 cut(s) 5, 204, 786, 1042, 1222
BtsI GCAGTG 2 cut(s) 672, 1091
BtsIMutI CAGTG 4 cut(s) 105, 672, 859, 1091
Cac8I GCNNGC 3 cut(s) 652, 1039, 1098
CciI TCATGA 1 cut(s) 523
CfoI GCGC 2 cut(s) 68, 828
Cfr13I GGNCC 2 cut(s) 95, 238
CseI GACGC 3 cut(s) 23, 72, 286
Csp6I GTAC 3 cut(s) 337, 984, 1221
CviAII CATG 4 cut(s) 172, 359, 524, 647
CviQI GTAC 3 cut(s) 337, 984, 1221
DdeI CTNAG 3 cut(s) 724, 835, 1101
DpnI GATC 5 cut(s) 86, 273, 386, 542, 1263
DpnII GATC 5 cut(s) 84, 271, 384, 540, 1261
DraI TTTAAA 2 cut(s) 373, 1063
EaeI YGGCCR 1 cut(s) 51
EciI GGCGGA 1 cut(s) 105
Eco130I CCWWGG 3 cut(s) 692, 791, 1271
Eco147I AGGCCT 1 cut(s) 1171
Eco24I GRGCYC 1 cut(s) 319
Eco31I GGTCTC 1 cut(s) 1118
Eco47I GGWCC 2 cut(s) 95, 238
Eco57I CTGAAG 1 cut(s) 1250
Eco81I CCTNAGG 1 cut(s) 724
Eco88I CYCGRG 1 cut(s) 428
Eco91I GGTNACC 1 cut(s) 1130
EcoNI CCTNNNNNAGG 1 cut(s) 1121
EcoO109I RGGNCCY 1 cut(s) 238
EcoO65I GGTNACC 1 cut(s) 1130
EcoRI GAATTC 1 cut(s) 730
EcoRII CCWGG 6 cut(s) 48, 75, 194, 232, 805, 979
EcoT14I CCWWGG 3 cut(s) 692, 791, 1271
EcoT38I GRGCYC 1 cut(s) 319
ErhI CCWWGG 3 cut(s) 692, 791, 1271
FaeI CATG 4 cut(s) 175, 362, 527, 650
FaqI GGGAC 4 cut(s) 75, 251, 1035, 1289
FatI CATG 4 cut(s) 171, 358, 523, 646
FauI CCCGC 1 cut(s) 1014
Fnu4HI GCNGC 5 cut(s) 36, 261, 264, 803, 891
FokI GGATG 4 cut(s) 211, 773, 1029, 1229
FriOI GRGCYC 1 cut(s) 319
Fsp4HI GCNGC 5 cut(s) 36, 261, 264, 803, 891
FspBI CTAG 9 cut(s) 393, 566, 693, 932, 960, 1047, 1248, 1266, 1272
GlaI GCGC 2 cut(s) 67, 827
GluI GCNGC 5 cut(s) 36, 261, 264, 803, 891
GsuI CTGGAG 1 cut(s) 963
HaeII RGCGCY 1 cut(s) 829
HaeIII GGCC 3 cut(s) 53, 654, 1171
HapII CCGG 2 cut(s) 320, 711
HgaI GACGC 3 cut(s) 23, 72, 286
HhaI GCGC 2 cut(s) 68, 828
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 4 cut(s) 175, 362, 527, 650
Hin6I GCGC 2 cut(s) 66, 826
HinP1I GCGC 2 cut(s) 66, 826
HinfI GANTC 6 cut(s) 142, 345, 433, 857, 1084, 1192
HpaII CCGG 2 cut(s) 320, 711
HphI GGTGA 3 cut(s) 514, 947, 1142
Hpy166II GTNNAC 3 cut(s) 337, 682, 986
Hpy188I TCNGA 3 cut(s) 131, 147, 838
Hpy188III TCNNGA 4 cut(s) 224, 388, 524, 944
Hpy8I GTNNAC 3 cut(s) 337, 682, 986
Hpy99I CGWCG 2 cut(s) 28, 819
HpyAV CCTTC 5 cut(s) 478, 490, 751, 776, 786
HpyCH4III ACNGT 3 cut(s) 871, 911, 1130
HpyCH4IV ACGT 1 cut(s) 1198
HpyCH4V TGCA 7 cut(s) 266, 382, 547, 592, 624, 677, 1202
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 746
HpyF3I CTNAG 3 cut(s) 724, 835, 1101
HpySE526I ACGT 1 cut(s) 1198
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 4 cut(s) 175, 362, 527, 650
HspAI GCGC 2 cut(s) 66, 826
Kzo9I GATC 5 cut(s) 84, 271, 384, 540, 1261
LmnI GCTCC 3 cut(s) 823, 868, 1024
Lsp1109I GCAGC 5 cut(s) 22, 247, 250, 814, 902
LweI GCATC 3 cut(s) 14, 611, 616
MaeI CTAG 9 cut(s) 393, 566, 693, 932, 960, 1047, 1248, 1266, 1272
MaeII ACGT 1 cut(s) 1198
MaeIII GTNAC 3 cut(s) 19, 962, 1130
MalI GATC 5 cut(s) 86, 273, 386, 542, 1263
MboI GATC 5 cut(s) 84, 271, 384, 540, 1261
MboII GAAGA 7 cut(s) 94, 278, 434, 553, 808, 837, 1243
MflI RGATCY 1 cut(s) 384
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 3 cut(s) 488, 599, 730
MlyI GAGTC 4 cut(s) 136, 354, 866, 1186
MmeI TCCRAC 2 cut(s) 890, 1112
MseI TTAA 4 cut(s) 372, 492, 1062, 1297
MslI CAYNNNNRTG 1 cut(s) 417
MspI CCGG 2 cut(s) 320, 711
MspR9I CCNGG 8 cut(s) 50, 77, 196, 234, 320, 711, 807, 981
MssI GTTTAAAC 1 cut(s) 373
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 6 cut(s) 50, 77, 196, 234, 807, 981
MvnI CGCG 2 cut(s) 17, 66
MwoI GCNNNNNNNGC 2 cut(s) 44, 746
NciI CCSGG 2 cut(s) 320, 711
NdeII GATC 5 cut(s) 84, 271, 384, 540, 1261
NlaIII CATG 4 cut(s) 175, 362, 527, 650
NlaIV GGNNCC 4 cut(s) 239, 669, 864, 942
NmuCI GTSAC 2 cut(s) 962, 1130
NspI RCATGY 1 cut(s) 650
PagI TCATGA 1 cut(s) 523
PceI AGGCCT 1 cut(s) 1171
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 2 cut(s) 433, 1084
PfoI TCCNGGA 1 cut(s) 709
PkrI GCNGC 5 cut(s) 37, 262, 265, 804, 892
PleI GAGTC 4 cut(s) 136, 353, 865, 1186
PmeI GTTTAAAC 1 cut(s) 373
PpsI GAGTC 4 cut(s) 136, 353, 865, 1186
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 6 cut(s) 48, 75, 194, 232, 805, 979
PspEI GGTNACC 1 cut(s) 1130
PspGI CCWGG 6 cut(s) 48, 75, 194, 232, 805, 979
PspN4I GGNNCC 4 cut(s) 239, 669, 864, 942
PspPI GGNCC 2 cut(s) 95, 238
PspPPI RGGWCCY 1 cut(s) 238
PstI CTGCAG 3 cut(s) 384, 549, 679
PsuI RGATCY 1 cut(s) 384
RsaI GTAC 3 cut(s) 338, 985, 1222
RsaNI GTAC 3 cut(s) 337, 984, 1221
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 4 cut(s) 372, 492, 1062, 1297
SatI GCNGC 5 cut(s) 36, 261, 264, 803, 891
Sau3AI GATC 5 cut(s) 84, 271, 384, 540, 1261
Sau96I GGNCC 2 cut(s) 95, 238
SbfI CCTGCAGG 1 cut(s) 549
SchI GAGTC 4 cut(s) 136, 354, 866, 1186
ScrFI CCNGG 8 cut(s) 50, 77, 196, 234, 320, 711, 807, 981
SdaI CCTGCAGG 1 cut(s) 549
SduI GDGCHC 1 cut(s) 319
SfaNI GCATC 3 cut(s) 14, 611, 616
SfcI CTRYAG 3 cut(s) 380, 545, 675
SinI GGWCC 2 cut(s) 95, 238
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 1118
SmoI CTYRAG 1 cut(s) 1118
Sse8387I CCTGCAGG 1 cut(s) 549
Sse9I AATT 3 cut(s) 488, 599, 730
SseBI AGGCCT 1 cut(s) 1171
SsiI CCGC 5 cut(s) 17, 90, 103, 462, 1021
SspMI CTAG 9 cut(s) 393, 566, 693, 932, 960, 1047, 1248, 1266, 1272
StuI AGGCCT 1 cut(s) 1171
StyD4I CCNGG 8 cut(s) 48, 75, 194, 232, 318, 709, 805, 979
StyI CCWWGG 3 cut(s) 692, 791, 1271
TaaI ACNGT 3 cut(s) 871, 911, 1130
TaiI ACGT 1 cut(s) 1201
TaqI TCGA 4 cut(s) 274, 603, 719, 817
TaqII GACCGA 1 cut(s) 327
TasI AATT 3 cut(s) 488, 599, 730
TfiI GAWTC 2 cut(s) 433, 1084
Tru1I TTAA 4 cut(s) 372, 492, 1062, 1297
Tru9I TTAA 4 cut(s) 372, 492, 1062, 1297
TscAI CASTG 4 cut(s) 105, 679, 859, 1098
TseFI GTSAC 2 cut(s) 962, 1130
TseI GCWGC 5 cut(s) 35, 260, 263, 802, 890
Tsp45I GTSAC 2 cut(s) 962, 1130
TspDTI ATGAA 6 cut(s) 160, 375, 435, 508, 512, 939
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 4 cut(s) 105, 679, 859, 1098
VpaK11BI GGWCC 2 cut(s) 95, 238
XagI CCTNNNNNAGG 1 cut(s) 1121
XapI RAATTY 2 cut(s) 488, 730
XceI RCATGY 1 cut(s) 650
XmaJI CCTAGG 2 cut(s) 692, 1271
XspI CTAG 9 cut(s) 393, 566, 693, 932, 960, 1047, 1248, 1266, 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.