ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 751 |
| AccBSI | CCGCTC | 1 cut(s) | 890 |
| AccII | CGCG | 1 cut(s) | 267 |
| AciI | CCGC | 4 cut(s) | 550, 827, 890, 938 |
| AclWI | GGATC | 5 cut(s) | 211, 224, 472, 770, 788 |
| AcsI | RAATTY | 1 cut(s) | 667 |
| AcuI | CTGAAG | 1 cut(s) | 1088 |
| AfaI | GTAC | 1 cut(s) | 1060 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 76, 77, 226, 796, 878, 979 |
| AgsI | TTSAA | 6 cut(s) | 184, 488, 518, 809, 959, 991 |
| AjnI | CCWGG | 2 cut(s) | 191, 646 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 84, 116 |
| AluBI | AGCT | 6 cut(s) | 30, 338, 607, 771, 1031, 1051 |
| AluI | AGCT | 6 cut(s) | 30, 338, 607, 771, 1031, 1051 |
| Alw21I | GWGCWC | 1 cut(s) | 773 |
| Alw26I | GTCTC | 3 cut(s) | 180, 693, 733 |
| AlwI | GGATC | 5 cut(s) | 211, 224, 472, 770, 788 |
| Ama87I | CYCGRG | 1 cut(s) | 365 |
| AoxI | GGCC | 3 cut(s) | 3, 949, 1007 |
| ApeKI | GCWGC | 1 cut(s) | 35 |
| ApoI | RAATTY | 1 cut(s) | 667 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 732, 764 |
| AsuC2I | CCSGG | 1 cut(s) | 719 |
| AsuHPI | GGTGA | 4 cut(s) | 245, 448, 451, 980 |
| AsuII | TTCGAA | 1 cut(s) | 319 |
| AvaI | CYCGRG | 1 cut(s) | 365 |
| AxyI | CCTNAGG | 1 cut(s) | 661 |
| BaeGI | GKGCMC | 1 cut(s) | 70 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 498, 531 |
| BamHI | GGATCC | 1 cut(s) | 216 |
| BanII | GRGCYC | 1 cut(s) | 773 |
| BbsI | GAAGAC | 1 cut(s) | 856 |
| Bbv12I | GWGCWC | 1 cut(s) | 773 |
| BbvI | GCAGC | 1 cut(s) | 22 |
| BccI | CCATC | 4 cut(s) | 50, 272, 908, 959 |
| BciT130I | CCWGG | 2 cut(s) | 193, 648 |
| BcnI | CCSGG | 1 cut(s) | 719 |
| BcoDI | GTCTC | 3 cut(s) | 180, 693, 733 |
| BfaI | CTAG | 3 cut(s) | 630, 1086, 1110 |
| BfmI | CTRYAG | 1 cut(s) | 927 |
| BfuAI | ACCTGC | 1 cut(s) | 751 |
| BglII | AGATCT | 1 cut(s) | 73 |
| BisI | GCNGC | 1 cut(s) | 36 |
| BlsI | GCNGC | 1 cut(s) | 37 |
| BmcAI | AGTACT | 1 cut(s) | 1060 |
| Bme1390I | CCNGG | 3 cut(s) | 193, 648, 719 |
| BmeT110I | CYCGRG | 1 cut(s) | 365 |
| BmiI | GGNNCC | 2 cut(s) | 218, 801 |
| BmrFI | CCNGG | 3 cut(s) | 193, 648, 719 |
| BmsI | GCATC | 3 cut(s) | 4, 322, 553 |
| BpiI | GAAGAC | 1 cut(s) | 856 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 547, 579, 690, 722 |
| Bpu14I | TTCGAA | 1 cut(s) | 319 |
| BpuMI | CCSGG | 1 cut(s) | 719 |
| BsaI | GGTCTC | 2 cut(s) | 693, 733 |
| BsaJI | CCNNGG | 2 cut(s) | 127, 717 |
| BsaWI | WCCGGW | 2 cut(s) | 509, 796 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 84, 95, 114, 125 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 76, 77, 226, 796, 878, 979 |
| Bse1I | ACTGG | 1 cut(s) | 535 |
| Bse21I | CCTNAGG | 1 cut(s) | 661 |
| Bse3DI | GCAATG | 1 cut(s) | 290 |
| BseBI | CCWGG | 2 cut(s) | 193, 648 |
| BseDI | CCNNGG | 2 cut(s) | 127, 717 |
| BseGI | GGATG | 2 cut(s) | 361, 970 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 76, 77, 226, 796, 878, 979 |
| BseMI | GCAATG | 1 cut(s) | 290 |
| BseMII | CTCAG | 4 cut(s) | 578, 675, 758, 1046 |
| BseNI | ACTGG | 1 cut(s) | 535 |
| BseRI | GAGGAG | 3 cut(s) | 339, 617, 1053 |
| BseSI | GKGCMC | 1 cut(s) | 70 |
| BseXI | GCAGC | 1 cut(s) | 22 |
| BseYI | CCCAGC | 1 cut(s) | 1103 |
| BsgI | GTGCAG | 2 cut(s) | 246, 953 |
| Bsh1236I | CGCG | 1 cut(s) | 267 |
| BshFI | GGCC | 3 cut(s) | 5, 951, 1009 |
| BsiHKAI | GWGCWC | 1 cut(s) | 773 |
| BsiHKCI | CYCGRG | 1 cut(s) | 365 |
| BsiSI | CCGG | 3 cut(s) | 510, 719, 797 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 76, 77, 226, 796, 878, 979 |
| BsmAI | GTCTC | 3 cut(s) | 180, 693, 733 |
| BsmI | GAATGC | 1 cut(s) | 167 |
| BsnI | GGCC | 3 cut(s) | 5, 951, 1009 |
| Bso31I | GGTCTC | 2 cut(s) | 693, 733 |
| BsoBI | CYCGRG | 1 cut(s) | 365 |
| Bsp119I | TTCGAA | 1 cut(s) | 319 |
| Bsp1286I | GDGCHC | 2 cut(s) | 70, 773 |
| BspACI | CCGC | 4 cut(s) | 550, 827, 890, 938 |
| BspANI | GGCC | 3 cut(s) | 5, 951, 1009 |
| BspCNI | CTCAG | 4 cut(s) | 577, 674, 759, 1045 |
| BspFNI | CGCG | 1 cut(s) | 267 |
| BspLI | GGNNCC | 2 cut(s) | 218, 801 |
| BspMI | ACCTGC | 1 cut(s) | 751 |
| BspPI | GGATC | 5 cut(s) | 211, 224, 472, 770, 788 |
| BspT104I | TTCGAA | 1 cut(s) | 319 |
| BspTNI | GGTCTC | 2 cut(s) | 693, 733 |
| BsrBI | CCGCTC | 1 cut(s) | 890 |
| BsrDI | GCAATG | 1 cut(s) | 290 |
| BsrI | ACTGG | 1 cut(s) | 535 |
| BssECI | CCNNGG | 2 cut(s) | 127, 717 |
| BssT1I | CCWWGG | 1 cut(s) | 127 |
| Bst2UI | CCWGG | 2 cut(s) | 193, 648 |
| Bst4CI | ACNGT | 2 cut(s) | 931, 1099 |
| Bst6I | CTCTTC | 3 cut(s) | 487, 731, 954 |
| BstBI | TTCGAA | 1 cut(s) | 319 |
| BstC8I | GCNNGC | 6 cut(s) | 28, 45, 134, 265, 340, 936 |
| BstDEI | CTNAG | 4 cut(s) | 564, 661, 767, 1032 |
| BstEII | GGTNACC | 1 cut(s) | 968 |
| BstF5I | GGATG | 2 cut(s) | 361, 970 |
| BstFNI | CGCG | 1 cut(s) | 267 |
| BstMAI | GTCTC | 3 cut(s) | 180, 693, 733 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 23, 32, 44, 335, 593, 683, 1119 |
| BstNI | CCWGG | 2 cut(s) | 193, 648 |
| BstNSI | RCATGY | 1 cut(s) | 587 |
| BstPI | GGTNACC | 1 cut(s) | 968 |
| BstSCI | CCNGG | 3 cut(s) | 191, 646, 717 |
| BstSFI | CTRYAG | 1 cut(s) | 927 |
| BstSLI | GKGCMC | 1 cut(s) | 70 |
| BstUI | CGCG | 1 cut(s) | 267 |
| BstV1I | GCAGC | 1 cut(s) | 22 |
| BstV2I | GAAGAC | 1 cut(s) | 856 |
| BstX2I | RGATCY | 2 cut(s) | 73, 216 |
| BstYI | RGATCY | 2 cut(s) | 73, 216 |
| Bsu36I | CCTNAGG | 1 cut(s) | 661 |
| BsuRI | GGCC | 3 cut(s) | 5, 951, 1009 |
| BtsCI | GGATG | 2 cut(s) | 361, 970 |
| BtsIMutI | CAGTG | 2 cut(s) | 572, 936 |
| BveI | ACCTGC | 1 cut(s) | 751 |
| Cac8I | GCNNGC | 6 cut(s) | 28, 45, 134, 265, 340, 936 |
| CseI | GACGC | 1 cut(s) | 752 |
| Csp6I | GTAC | 1 cut(s) | 1059 |
| CviAII | CATG | 6 cut(s) | 98, 172, 296, 376, 461, 584 |
| CviQI | GTAC | 1 cut(s) | 1059 |
| DdeI | CTNAG | 4 cut(s) | 564, 661, 767, 1032 |
| Eam1104I | CTCTTC | 3 cut(s) | 487, 731, 954 |
| EarI | CTCTTC | 3 cut(s) | 487, 731, 954 |
| EciI | GGCGGA | 1 cut(s) | 953 |
| Ecl136II | GAGCTC | 1 cut(s) | 771 |
| Eco130I | CCWWGG | 1 cut(s) | 127 |
| Eco147I | AGGCCT | 1 cut(s) | 1009 |
| Eco24I | GRGCYC | 1 cut(s) | 773 |
| Eco31I | GGTCTC | 2 cut(s) | 693, 733 |
| Eco53kI | GAGCTC | 1 cut(s) | 771 |
| Eco57I | CTGAAG | 1 cut(s) | 1088 |
| Eco81I | CCTNAGG | 1 cut(s) | 661 |
| Eco88I | CYCGRG | 1 cut(s) | 365 |
| Eco91I | GGTNACC | 1 cut(s) | 968 |
| EcoICRI | GAGCTC | 1 cut(s) | 771 |
| EcoO65I | GGTNACC | 1 cut(s) | 968 |
| EcoRI | GAATTC | 1 cut(s) | 667 |
| EcoRII | CCWGG | 2 cut(s) | 191, 646 |
| EcoT14I | CCWWGG | 1 cut(s) | 127 |
| EcoT38I | GRGCYC | 1 cut(s) | 773 |
| ErhI | CCWWGG | 1 cut(s) | 127 |
| FaeI | CATG | 6 cut(s) | 101, 175, 299, 379, 464, 587 |
| FaiI | YATR | 9 cut(s) | 99, 173, 297, 344, 377, 414, 462, 585, 846 |
| FatI | CATG | 6 cut(s) | 97, 171, 295, 375, 460, 583 |
| FauI | CCCGC | 2 cut(s) | 543, 820 |
| Fnu4HI | GCNGC | 1 cut(s) | 36 |
| FokI | GGATG | 2 cut(s) | 368, 977 |
| FriOI | GRGCYC | 1 cut(s) | 773 |
| Fsp4HI | GCNGC | 1 cut(s) | 36 |
| FspBI | CTAG | 3 cut(s) | 630, 1086, 1110 |
| GluI | GCNGC | 1 cut(s) | 36 |
| GsaI | CCCAGC | 1 cut(s) | 1107 |
| HaeIII | GGCC | 3 cut(s) | 5, 951, 1009 |
| HapII | CCGG | 3 cut(s) | 510, 719, 797 |
| HgaI | GACGC | 1 cut(s) | 752 |
| Hin1II | CATG | 6 cut(s) | 101, 175, 299, 379, 464, 587 |
| HincII | GTYRAC | 1 cut(s) | 619 |
| HindII | GTYRAC | 1 cut(s) | 619 |
| HindIII | AAGCTT | 1 cut(s) | 1049 |
| HinfI | GANTC | 5 cut(s) | 321, 370, 402, 495, 922 |
| HpaII | CCGG | 3 cut(s) | 510, 719, 797 |
| HphI | GGTGA | 4 cut(s) | 245, 448, 451, 980 |
| Hpy166II | GTNNAC | 3 cut(s) | 103, 456, 619 |
| Hpy188I | TCNGA | 5 cut(s) | 216, 768, 775, 1035, 1068 |
| Hpy188III | TCNNGA | 2 cut(s) | 353, 503 |
| Hpy8I | GTNNAC | 3 cut(s) | 103, 456, 619 |
| HpyAV | CCTTC | 5 cut(s) | 415, 427, 713, 723, 792 |
| HpyCH4III | ACNGT | 2 cut(s) | 931, 1099 |
| HpyCH4V | TGCA | 6 cut(s) | 17, 263, 295, 529, 614, 934 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 23, 32, 44, 335, 593, 683, 1119 |
| HpyF3I | CTNAG | 4 cut(s) | 564, 661, 767, 1032 |
| Hsp92II | CATG | 6 cut(s) | 101, 175, 299, 379, 464, 587 |
| LmnI | GCTCC | 4 cut(s) | 604, 760, 841, 887 |
| Lsp1109I | GCAGC | 1 cut(s) | 22 |
| LweI | GCATC | 3 cut(s) | 4, 322, 553 |
| MaeI | CTAG | 3 cut(s) | 630, 1086, 1110 |
| MaeIII | GTNAC | 4 cut(s) | 19, 577, 968, 982 |
| MbiI | CCGCTC | 1 cut(s) | 890 |
| MfeI | CAATTG | 1 cut(s) | 804 |
| MflI | RGATCY | 2 cut(s) | 73, 216 |
| MhlI | GDGCHC | 2 cut(s) | 70, 773 |
| MluCI | AATT | 6 cut(s) | 116, 530, 591, 609, 667, 804 |
| MlyI | GAGTC | 1 cut(s) | 504 |
| MseI | TTAA | 3 cut(s) | 285, 309, 429 |
| MspI | CCGG | 3 cut(s) | 510, 719, 797 |
| MspR9I | CCNGG | 3 cut(s) | 193, 648, 719 |
| MunI | CAATTG | 1 cut(s) | 804 |
| Mva1269I | GAATGC | 1 cut(s) | 167 |
| MvaI | CCWGG | 2 cut(s) | 193, 648 |
| MvnI | CGCG | 1 cut(s) | 267 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 23, 32, 44, 335, 593, 683, 1119 |
| NciI | CCSGG | 1 cut(s) | 719 |
| NlaIII | CATG | 6 cut(s) | 101, 175, 299, 379, 464, 587 |
| NlaIV | GGNNCC | 2 cut(s) | 218, 801 |
| NmeAIII | GCCGAG | 1 cut(s) | 779 |
| NmuCI | GTSAC | 3 cut(s) | 577, 968, 982 |
| NspI | RCATGY | 1 cut(s) | 587 |
| NspV | TTCGAA | 1 cut(s) | 319 |
| PceI | AGGCCT | 1 cut(s) | 1009 |
| PctI | GAATGC | 1 cut(s) | 167 |
| PfeI | GAWTC | 4 cut(s) | 321, 370, 402, 922 |
| PfoI | TCCNGGA | 1 cut(s) | 646 |
| PkrI | GCNGC | 1 cut(s) | 37 |
| PleI | GAGTC | 1 cut(s) | 503 |
| PpsI | GAGTC | 1 cut(s) | 503 |
| Psp124BI | GAGCTC | 1 cut(s) | 773 |
| Psp6I | CCWGG | 2 cut(s) | 191, 646 |
| PspEI | GGTNACC | 1 cut(s) | 968 |
| PspFI | CCCAGC | 1 cut(s) | 1103 |
| PspGI | CCWGG | 2 cut(s) | 191, 646 |
| PspN4I | GGNNCC | 2 cut(s) | 218, 801 |
| PsuI | RGATCY | 2 cut(s) | 73, 216 |
| RsaI | GTAC | 1 cut(s) | 1060 |
| RsaNI | GTAC | 1 cut(s) | 1059 |
| SacI | GAGCTC | 1 cut(s) | 773 |
| SaqAI | TTAA | 3 cut(s) | 285, 309, 429 |
| SatI | GCNGC | 1 cut(s) | 36 |
| ScaI | AGTACT | 1 cut(s) | 1060 |
| SchI | GAGTC | 1 cut(s) | 504 |
| ScrFI | CCNGG | 3 cut(s) | 193, 648, 719 |
| SduI | GDGCHC | 2 cut(s) | 70, 773 |
| SfaNI | GCATC | 3 cut(s) | 4, 322, 553 |
| SfcI | CTRYAG | 1 cut(s) | 927 |
| SfuI | TTCGAA | 1 cut(s) | 319 |
| Sse9I | AATT | 6 cut(s) | 116, 530, 591, 609, 667, 804 |
| SseBI | AGGCCT | 1 cut(s) | 1009 |
| SsiI | CCGC | 4 cut(s) | 550, 827, 890, 938 |
| SspMI | CTAG | 3 cut(s) | 630, 1086, 1110 |
| SstI | GAGCTC | 1 cut(s) | 773 |
| StuI | AGGCCT | 1 cut(s) | 1009 |
| StyD4I | CCNGG | 3 cut(s) | 191, 646, 717 |
| StyI | CCWWGG | 1 cut(s) | 127 |
| TaaI | ACNGT | 2 cut(s) | 931, 1099 |
| TaqI | TCGA | 4 cut(s) | 156, 187, 319, 540 |
| TasI | AATT | 6 cut(s) | 116, 530, 591, 609, 667, 804 |
| TatI | WGTACW | 1 cut(s) | 1058 |
| TfiI | GAWTC | 4 cut(s) | 321, 370, 402, 922 |
| Tru1I | TTAA | 3 cut(s) | 285, 309, 429 |
| Tru9I | TTAA | 3 cut(s) | 285, 309, 429 |
| TscAI | CASTG | 2 cut(s) | 572, 936 |
| TseFI | GTSAC | 3 cut(s) | 577, 968, 982 |
| TseI | GCWGC | 1 cut(s) | 35 |
| Tsp45I | GTSAC | 3 cut(s) | 577, 968, 982 |
| TspDTI | ATGAA | 3 cut(s) | 160, 372, 477 |
| TspGWI | ACGGA | 1 cut(s) | 900 |
| TspRI | CASTG | 2 cut(s) | 572, 936 |
| XapI | RAATTY | 1 cut(s) | 667 |
| XceI | RCATGY | 1 cut(s) | 587 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 227 |
| XspI | CTAG | 3 cut(s) | 630, 1086, 1110 |
| ZrmI | AGTACT | 1 cut(s) | 1060 |