Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 782 |
| AciI | CCGC | 2 cut(s) | 238, 729 |
| AclWI | GGATC | 1 cut(s) | 152 |
| AcsI | RAATTY | 3 cut(s) | 209, 381, 701 |
| AfaI | GTAC | 1 cut(s) | 363 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 76, 77, 277, 629 |
| AgsI | TTSAA | 5 cut(s) | 172, 221, 547, 602, 700 |
| AjiI | CACGTC | 1 cut(s) | 192 |
| AjnI | CCWGG | 3 cut(s) | 264, 324, 568 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 264, 296 |
| AluBI | AGCT | 3 cut(s) | 30, 85, 136 |
| AluI | AGCT | 3 cut(s) | 30, 85, 136 |
| AlwI | GGATC | 1 cut(s) | 152 |
| Ama87I | CYCGRG | 1 cut(s) | 455 |
| ApeKI | GCWGC | 3 cut(s) | 35, 136, 618 |
| ApoI | RAATTY | 3 cut(s) | 209, 381, 701 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 485 |
| AspA2I | CCTAGG | 1 cut(s) | 689 |
| AspS9I | GGNCC | 2 cut(s) | 95, 268 |
| AsuHPI | GGTGA | 1 cut(s) | 712 |
| AsuNHI | GCTAGC | 1 cut(s) | 26 |
| AvaI | CYCGRG | 1 cut(s) | 455 |
| AvaII | GGWCC | 2 cut(s) | 95, 268 |
| AvrII | CCTAGG | 1 cut(s) | 689 |
| BanII | GRGCYC | 1 cut(s) | 316 |
| BbsI | GAAGAC | 2 cut(s) | 102, 806 |
| BbvI | GCAGC | 3 cut(s) | 22, 123, 605 |
| BccI | CCATC | 2 cut(s) | 190, 332 |
| BciT130I | CCWGG | 3 cut(s) | 266, 326, 570 |
| BfaI | CTAG | 2 cut(s) | 27, 690 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 44 |
| BisI | GCNGC | 3 cut(s) | 36, 137, 619 |
| BlnI | CCTAGG | 1 cut(s) | 689 |
| BlsI | GCNGC | 3 cut(s) | 37, 138, 620 |
| Bme1390I | CCNGG | 3 cut(s) | 266, 326, 570 |
| Bme18I | GGWCC | 2 cut(s) | 95, 268 |
| BmeT110I | CYCGRG | 1 cut(s) | 455 |
| BmgBI | CACGTC | 1 cut(s) | 192 |
| BmgT120I | GGNCC | 2 cut(s) | 95, 268 |
| BmiI | GGNNCC | 3 cut(s) | 315, 567, 666 |
| BmrFI | CCNGG | 3 cut(s) | 266, 326, 570 |
| BmrI | ACTGGG | 1 cut(s) | 453 |
| BmsI | GCATC | 1 cut(s) | 510 |
| BmtI | GCTAGC | 1 cut(s) | 30 |
| BmuI | ACTGGG | 1 cut(s) | 453 |
| BpiI | GAAGAC | 2 cut(s) | 102, 806 |
| BpmI | CTGGAG | 2 cut(s) | 552, 669 |
| BpuEI | CTTGAG | 1 cut(s) | 593 |
| BsaJI | CCNNGG | 1 cut(s) | 689 |
| BsaWI | WCCGGW | 1 cut(s) | 316 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 76, 77, 277, 629 |
| Bse1I | ACTGG | 4 cut(s) | 429, 448, 639, 809 |
| BseBI | CCWGG | 3 cut(s) | 266, 326, 570 |
| BseDI | CCNNGG | 1 cut(s) | 689 |
| BseGI | GGATG | 1 cut(s) | 201 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 76, 77, 277, 629 |
| BseMII | CTCAG | 3 cut(s) | 128, 651, 759 |
| BseNI | ACTGG | 4 cut(s) | 429, 448, 639, 809 |
| BseRI | GAGGAG | 3 cut(s) | 105, 116, 399 |
| BseXI | GCAGC | 3 cut(s) | 22, 123, 605 |
| Bsh1285I | CGRYCG | 1 cut(s) | 12 |
| BsiEI | CGRYCG | 1 cut(s) | 12 |
| BsiHKCI | CYCGRG | 1 cut(s) | 455 |
| BsiSI | CCGG | 2 cut(s) | 317, 726 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 76, 77, 277, 629 |
| BsoBI | CYCGRG | 1 cut(s) | 455 |
| Bsp1286I | GDGCHC | 1 cut(s) | 316 |
| Bsp143I | GATC | 3 cut(s) | 9, 157, 307 |
| BspACI | CCGC | 2 cut(s) | 238, 729 |
| BspCNI | CTCAG | 3 cut(s) | 127, 652, 758 |
| BspHI | TCATGA | 1 cut(s) | 520 |
| BspLI | GGNNCC | 3 cut(s) | 315, 567, 666 |
| BspOI | GCTAGC | 1 cut(s) | 30 |
| BspPI | GGATC | 1 cut(s) | 152 |
| BsrI | ACTGG | 4 cut(s) | 429, 448, 639, 809 |
| BssECI | CCNNGG | 1 cut(s) | 689 |
| BssMI | GATC | 3 cut(s) | 9, 157, 307 |
| BssT1I | CCWWGG | 1 cut(s) | 689 |
| Bst2UI | CCWGG | 3 cut(s) | 266, 326, 570 |
| BstC8I | GCNNGC | 2 cut(s) | 28, 645 |
| BstDEI | CTNAG | 3 cut(s) | 114, 660, 745 |
| BstF5I | GGATG | 1 cut(s) | 201 |
| BstKTI | GATC | 3 cut(s) | 12, 160, 310 |
| BstMBI | GATC | 3 cut(s) | 9, 157, 307 |
| BstMCI | CGRYCG | 1 cut(s) | 12 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 32, 44, 586 |
| BstNI | CCWGG | 3 cut(s) | 266, 326, 570 |
| BstSCI | CCNGG | 3 cut(s) | 264, 324, 568 |
| BstV1I | GCAGC | 3 cut(s) | 22, 123, 605 |
| BstV2I | GAAGAC | 2 cut(s) | 102, 806 |
| BtrI | CACGTC | 1 cut(s) | 192 |
| BtsCI | GGATG | 1 cut(s) | 201 |
| Cac8I | GCNNGC | 2 cut(s) | 28, 645 |
| CciI | TCATGA | 1 cut(s) | 520 |
| Cfr13I | GGNCC | 2 cut(s) | 95, 268 |
| CseI | GACGC | 1 cut(s) | 539 |
| Csp6I | GTAC | 1 cut(s) | 362 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 167, 202 |
| CviAII | CATG | 1 cut(s) | 521 |
| CviJI | RGCY | 8 cut(s) | 5, 30, 85, 136, 314, 462, 566, 580 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 30, 85, 136, 314, 462, 566, 580 |
| CviQI | GTAC | 1 cut(s) | 362 |
| DdeI | CTNAG | 3 cut(s) | 114, 660, 745 |
| DpnI | GATC | 3 cut(s) | 11, 159, 309 |
| DpnII | GATC | 3 cut(s) | 9, 157, 307 |
| EciI | GGCGGA | 1 cut(s) | 744 |
| Eco130I | CCWWGG | 1 cut(s) | 689 |
| Eco24I | GRGCYC | 1 cut(s) | 316 |
| Eco47I | GGWCC | 2 cut(s) | 95, 268 |
| Eco88I | CYCGRG | 1 cut(s) | 455 |
| EcoRI | GAATTC | 1 cut(s) | 209 |
| EcoRII | CCWGG | 3 cut(s) | 264, 324, 568 |
| EcoT14I | CCWWGG | 1 cut(s) | 689 |
| EcoT38I | GRGCYC | 1 cut(s) | 316 |
| ErhI | CCWWGG | 1 cut(s) | 689 |
| FaeI | CATG | 1 cut(s) | 524 |
| FaiI | YATR | 8 cut(s) | 306, 336, 368, 417, 437, 522, 641, 773 |
| FatI | CATG | 1 cut(s) | 520 |
| FblI | GTMKAC | 1 cut(s) | 782 |
| Fnu4HI | GCNGC | 3 cut(s) | 36, 137, 619 |
| FokI | GGATG | 1 cut(s) | 208 |
| FriOI | GRGCYC | 1 cut(s) | 316 |
| Fsp4HI | GCNGC | 3 cut(s) | 36, 137, 619 |
| FspBI | CTAG | 2 cut(s) | 27, 690 |
| GluI | GCNGC | 3 cut(s) | 36, 137, 619 |
| GsuI | CTGGAG | 2 cut(s) | 552, 669 |
| HapII | CCGG | 2 cut(s) | 317, 726 |
| HgaI | GACGC | 1 cut(s) | 539 |
| Hin1II | CATG | 1 cut(s) | 524 |
| HindIII | AAGCTT | 1 cut(s) | 83 |
| HinfI | GANTC | 3 cut(s) | 100, 217, 448 |
| HpaII | CCGG | 2 cut(s) | 317, 726 |
| HphI | GGTGA | 1 cut(s) | 712 |
| Hpy166II | GTNNAC | 3 cut(s) | 358, 632, 783 |
| Hpy188I | TCNGA | 3 cut(s) | 99, 380, 661 |
| Hpy188III | TCNNGA | 5 cut(s) | 214, 221, 521, 751, 761 |
| Hpy8I | GTNNAC | 3 cut(s) | 358, 632, 783 |
| Hpy99I | CGWCG | 2 cut(s) | 17, 555 |
| HpyAV | CCTTC | 1 cut(s) | 475 |
| HpyCH4IV | ACGT | 3 cut(s) | 15, 191, 360 |
| HpyCH4V | TGCA | 3 cut(s) | 147, 589, 643 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 32, 44, 586 |
| HpyF3I | CTNAG | 3 cut(s) | 114, 660, 745 |
| HpySE526I | ACGT | 3 cut(s) | 15, 191, 360 |
| Hsp92II | CATG | 1 cut(s) | 524 |
| Kzo9I | GATC | 3 cut(s) | 9, 157, 307 |
| LmnI | GCTCC | 2 cut(s) | 319, 571 |
| Lsp1109I | GCAGC | 3 cut(s) | 22, 123, 605 |
| LweI | GCATC | 1 cut(s) | 510 |
| MaeI | CTAG | 2 cut(s) | 27, 690 |
| MaeII | ACGT | 3 cut(s) | 15, 191, 360 |
| MaeIII | GTNAC | 2 cut(s) | 19, 718 |
| MalI | GATC | 3 cut(s) | 11, 159, 309 |
| MboI | GATC | 3 cut(s) | 9, 157, 307 |
| MboII | GAAGA | 5 cut(s) | 102, 341, 443, 808, 811 |
| MhlI | GDGCHC | 1 cut(s) | 316 |
| MluCI | AATT | 5 cut(s) | 209, 381, 590, 596, 701 |
| MroXI | GAANNNNTTC | 1 cut(s) | 485 |
| MseI | TTAA | 1 cut(s) | 285 |
| MspI | CCGG | 2 cut(s) | 317, 726 |
| MspR9I | CCNGG | 3 cut(s) | 266, 326, 570 |
| MvaI | CCWGG | 3 cut(s) | 266, 326, 570 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 32, 44, 586 |
| NdeII | GATC | 3 cut(s) | 9, 157, 307 |
| NheI | GCTAGC | 1 cut(s) | 26 |
| NlaIII | CATG | 1 cut(s) | 524 |
| NlaIV | GGNNCC | 3 cut(s) | 315, 567, 666 |
| NmuCI | GTSAC | 2 cut(s) | 19, 718 |
| PagI | TCATGA | 1 cut(s) | 520 |
| PdmI | GAANNNNTTC | 1 cut(s) | 485 |
| PfeI | GAWTC | 3 cut(s) | 100, 217, 448 |
| PfoI | TCCNGGA | 1 cut(s) | 264 |
| PkrI | GCNGC | 3 cut(s) | 37, 138, 620 |
| Ple19I | CGATCG | 1 cut(s) | 12 |
| Psp6I | CCWGG | 3 cut(s) | 264, 324, 568 |
| PspGI | CCWGG | 3 cut(s) | 264, 324, 568 |
| PspN4I | GGNNCC | 3 cut(s) | 315, 567, 666 |
| PspPI | GGNCC | 2 cut(s) | 95, 268 |
| PvuI | CGATCG | 1 cut(s) | 12 |
| RsaI | GTAC | 1 cut(s) | 363 |
| RsaNI | GTAC | 1 cut(s) | 362 |
| SaqAI | TTAA | 1 cut(s) | 285 |
| SatI | GCNGC | 3 cut(s) | 36, 137, 619 |
| Sau3AI | GATC | 3 cut(s) | 9, 157, 307 |
| Sau96I | GGNCC | 2 cut(s) | 95, 268 |
| ScrFI | CCNGG | 3 cut(s) | 266, 326, 570 |
| SduI | GDGCHC | 1 cut(s) | 316 |
| SfaNI | GCATC | 1 cut(s) | 510 |
| SinI | GGWCC | 2 cut(s) | 95, 268 |
| SmlI | CTYRAG | 1 cut(s) | 608 |
| SmoI | CTYRAG | 1 cut(s) | 608 |
| Sse9I | AATT | 5 cut(s) | 209, 381, 590, 596, 701 |
| SsiI | CCGC | 2 cut(s) | 238, 729 |
| SspI | AATATT | 1 cut(s) | 585 |
| SspMI | CTAG | 2 cut(s) | 27, 690 |
| StyD4I | CCNGG | 3 cut(s) | 264, 324, 568 |
| StyI | CCWWGG | 1 cut(s) | 689 |
| TaiI | ACGT | 3 cut(s) | 18, 194, 363 |
| TaqI | TCGA | 5 cut(s) | 8, 12, 129, 553, 683 |
| TasI | AATT | 5 cut(s) | 209, 381, 590, 596, 701 |
| TfiI | GAWTC | 3 cut(s) | 100, 217, 448 |
| Tru1I | TTAA | 1 cut(s) | 285 |
| Tru9I | TTAA | 1 cut(s) | 285 |
| TseFI | GTSAC | 2 cut(s) | 19, 718 |
| TseI | GCWGC | 3 cut(s) | 35, 136, 618 |
| Tsp45I | GTSAC | 2 cut(s) | 19, 718 |
| TspDTI | ATGAA | 2 cut(s) | 240, 383 |
| VpaK11BI | GGWCC | 2 cut(s) | 95, 268 |
| XapI | RAATTY | 3 cut(s) | 209, 381, 701 |
| XmaJI | CCTAGG | 1 cut(s) | 689 |
| XmiI | GTMKAC | 1 cut(s) | 782 |
| XmnI | GAANNNNTTC | 1 cut(s) | 485 |
| XspI | CTAG | 2 cut(s) | 27, 690 |