FvH4_6g26370

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000169
Physical Location & Seq
Forward (+)
20170961 .. 20172806
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26370.t1

Sequence Viewer

Length: 1032 bp
ATGGCCTCAATCGACGTTGTCACTGCCAGTTTCGCCGCCTCCTTGGCACTGGGCGGTGGCGGGTCTGCTCCTGATATAGGGAAGATCGGCGGGGGTCCTCACACTTGGCATGTCTCTCATCCTTTTCGCATCCAAGAACGTGCATCCAGTTTGTTCTTGGCTTCATTCCAATCGGCCTCTGACCGAAATATGGTGTTGAAGGGTGGAGCCTGGTGTTTTGACAGAACACCGGTATGCCTGGAGATCTATGACGACATCCGTCCTCTTGTTGAAGTCCCTATGAAACACGTCCGTTTCTGGACTAGGGTCACATGCATTCCTCCTTTGTATGAAGAGCCAAAGAAGGAGTTTCTGGTGGCTTCATCGACTATGACAAGAAGGAGTTTCTTCGGGAAATCTCACCTAAGCTTATCCGCCGGTGCCCATGATATCTCTAAACCTCTACTGCCCGAAAGATGTGTTTTCCTATCACATGGCGTCGAACCCTTACTGAAGTTCAAATATGAACGACTTCAAGGGCGATGCTCTGTCTGCAATCTCATCACGCATGCAGGTATTCGGTATGAGGAGAGACCGACTTCAAGTCCAGCTGAAGCAGCAGCGATTTCGGCACCACAACCAAAAAATAAAAAGCCTGTCATCAGTAGGTTTGAGAAGGCAGCAACAGTGATTATTTCGACTTTGGAATCTGAGCATGAGTGTGTTGAGTTGGTGGACAAGGGTCCAATATTGCAAGGTAGCTCCTCCGGCATTGCAACCAATGTTGGTACTGACGGTGGTGTGGATCCTTCTGCTGGTGTTATGGTGGCGGGACGAGTTCCAGTCCTTCAAGCTGAATCTCTTGGTCTGTCGGAGAATGATATGGATTCTACTCTTATTTCCTCGAAGAGAAAGGTTGGTAAACCTCTTGGGCAGAAGAACAAAGTGCCTAGGCCACTAAGGACTCCAGCTGCTCCTCCATTGCGAATCACTACTCCAAAGTTTGATAGGGGTAAGGCGGGCCCGAACGATAGGGGCAATGAGGCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

344

Amino Acids

36.93

Weight (kDa)

9.22

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 143 - 184 8.3e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 542
AccB1I GGYRCC 2 cut(s) 419, 610
AciI CCGC 7 cut(s) 36, 54, 60, 90, 414, 809, 998
AclWI GGATC 2 cut(s) 779, 792
AcuI CTGAAG 2 cut(s) 512, 612
AcyI GRCGYC 1 cut(s) 477
AfaI GTAC 1 cut(s) 769
AfiI CCNNNNNNNGG 3 cut(s) 77, 190, 794
AflIII ACRYGT 1 cut(s) 286
AgeI ACCGGT 1 cut(s) 229
AgsI TTSAA 6 cut(s) 199, 272, 499, 515, 582, 830
AhdI GACNNNNNGTC 1 cut(s) 582
AjiI CACGTC 1 cut(s) 289
AjnI CCWGG 2 cut(s) 209, 237
AluBI AGCT 5 cut(s) 408, 590, 741, 833, 950
AluI AGCT 5 cut(s) 408, 590, 741, 833, 950
Alw26I GTCTC 2 cut(s) 118, 565
AlwI GGATC 2 cut(s) 779, 792
AoxI GGCC 5 cut(s) 3, 174, 932, 1000, 1023
ApaI GGGCCC 1 cut(s) 1004
ApeKI GCWGC 4 cut(s) 596, 599, 659, 950
AsiGI ACCGGT 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 510
AspA2I CCTAGG 1 cut(s) 929
AspS9I GGNCC 4 cut(s) 95, 722, 1000, 1001
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 2 cut(s) 95, 722
AvrII CCTAGG 1 cut(s) 929
BaeGI GKGCMC 2 cut(s) 424, 1004
BamHI GGATCC 1 cut(s) 784
BanI GGYRCC 2 cut(s) 419, 610
BanII GRGCYC 1 cut(s) 1004
BbvI GCAGC 4 cut(s) 608, 611, 671, 937
BcgI CGANNNNNNTGC 2 cut(s) 588, 622
BciT130I CCWGG 2 cut(s) 211, 239
BcoDI GTCTC 2 cut(s) 118, 565
BfaI CTAG 2 cut(s) 303, 930
BfuAI ACCTGC 1 cut(s) 542
BglI GCCNNNNNGGC 1 cut(s) 44
BglII AGATCT 1 cut(s) 243
BisI GCNGC 5 cut(s) 36, 597, 600, 660, 951
BlnI CCTAGG 1 cut(s) 929
BlsI GCNGC 5 cut(s) 37, 598, 601, 661, 952
Bme1390I CCNGG 2 cut(s) 211, 239
Bme18I GGWCC 2 cut(s) 95, 722
BmeRI GACNNNNNGTC 1 cut(s) 582
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 4 cut(s) 95, 722, 1000, 1001
BmiI GGNNCC 7 cut(s) 96, 208, 421, 612, 723, 786, 1002
BmrFI CCNGG 2 cut(s) 211, 239
BmrI ACTGGG 1 cut(s) 59
BmsI GCATC 3 cut(s) 138, 152, 512
BmuI ACTGGG 1 cut(s) 59
BoxI GACNNNNGTC 3 cut(s) 258, 305, 720
BpmI CTGGAG 2 cut(s) 260, 930
Bpu10I CCTNAGC 1 cut(s) 404
BsaHI GRCGYC 1 cut(s) 477
BsaI GGTCTC 1 cut(s) 565
BsaJI CCNNGG 2 cut(s) 42, 929
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 190, 794
Bse118I RCCGGY 2 cut(s) 229, 416
Bse1I ACTGG 4 cut(s) 27, 54, 147, 821
Bse3DI GCAATG 3 cut(s) 750, 959, 1024
BseBI CCWGG 2 cut(s) 211, 239
BseDI CCNNGG 2 cut(s) 42, 929
BseGI GGATG 4 cut(s) 118, 129, 143, 255
BseLI CCNNNNNNNGG 3 cut(s) 77, 190, 794
BseMI GCAATG 3 cut(s) 750, 959, 1024
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 4 cut(s) 27, 54, 147, 821
BseRI GAGGAG 3 cut(s) 581, 733, 945
BseSI GKGCMC 2 cut(s) 424, 1004
BseXI GCAGC 4 cut(s) 608, 611, 671, 937
BshFI GGCC 5 cut(s) 5, 176, 934, 1002, 1025
BshNI GGYRCC 2 cut(s) 419, 610
BshTI ACCGGT 1 cut(s) 229
BsiSI CCGG 3 cut(s) 230, 417, 747
BslFI GGGAC 2 cut(s) 260, 825
BslI CCNNNNNNNGG 3 cut(s) 77, 190, 794
BsmAI GTCTC 2 cut(s) 118, 565
BsmFI GGGAC 2 cut(s) 260, 825
BsmI GAATGC 1 cut(s) 315
BsnI GGCC 5 cut(s) 5, 176, 934, 1002, 1025
Bso31I GGTCTC 1 cut(s) 565
Bsp120I GGGCCC 1 cut(s) 1000
Bsp1286I GDGCHC 2 cut(s) 424, 1004
Bsp143I GATC 3 cut(s) 84, 243, 784
BspACI CCGC 7 cut(s) 36, 54, 60, 90, 414, 809, 998
BspANI GGCC 5 cut(s) 5, 176, 934, 1002, 1025
BspCNI CTCAG 1 cut(s) 682
BspLI GGNNCC 7 cut(s) 96, 208, 421, 612, 723, 786, 1002
BspMI ACCTGC 1 cut(s) 542
BspPI GGATC 2 cut(s) 779, 792
BspQI GCTCTTC 1 cut(s) 327
BspT107I GGYRCC 2 cut(s) 419, 610
BspTNI GGTCTC 1 cut(s) 565
BsrDI GCAATG 3 cut(s) 750, 959, 1024
BsrFI RCCGGY 2 cut(s) 229, 416
BsrI ACTGG 4 cut(s) 27, 54, 147, 821
BssAI RCCGGY 2 cut(s) 229, 416
BssECI CCNNGG 2 cut(s) 42, 929
BssMI GATC 3 cut(s) 84, 243, 784
BssNI GRCGYC 1 cut(s) 477
BssT1I CCWWGG 2 cut(s) 42, 929
Bst2UI CCWGG 2 cut(s) 211, 239
Bst4CI ACNGT 2 cut(s) 667, 776
Bst6I CTCTTC 2 cut(s) 327, 881
BstACI GRCGYC 1 cut(s) 477
BstC8I GCNNGC 2 cut(s) 549, 1000
BstDEI CTNAG 3 cut(s) 404, 690, 938
BstENI CCTNNNNNAGG 1 cut(s) 75
BstF5I GGATG 4 cut(s) 118, 129, 143, 255
BstKTI GATC 3 cut(s) 87, 246, 787
BstMAI GTCTC 2 cut(s) 118, 565
BstMBI GATC 3 cut(s) 84, 243, 784
BstMWI GCNNNNNNNGC 6 cut(s) 32, 44, 531, 596, 608, 747
BstNI CCWGG 2 cut(s) 211, 239
BstNSI RCATGY 3 cut(s) 113, 315, 551
BstPAI GACNNNNGTC 3 cut(s) 258, 305, 720
BstSCI CCNGG 2 cut(s) 209, 237
BstSLI GKGCMC 2 cut(s) 424, 1004
BstV1I GCAGC 4 cut(s) 608, 611, 671, 937
BstX2I RGATCY 2 cut(s) 243, 784
BstYI RGATCY 2 cut(s) 243, 784
BsuRI GGCC 5 cut(s) 5, 176, 934, 1002, 1025
BtgZI GCGATG 1 cut(s) 535
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 4 cut(s) 118, 129, 143, 255
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 3 cut(s) 21, 47, 672
BveI ACCTGC 1 cut(s) 542
Cac8I GCNNGC 2 cut(s) 549, 1000
Cfr10I RCCGGY 2 cut(s) 229, 416
Cfr13I GGNCC 4 cut(s) 95, 722, 1000, 1001
CseI GACGC 1 cut(s) 466
Csp6I GTAC 1 cut(s) 768
CspAI ACCGGT 1 cut(s) 229
CviAII CATG 6 cut(s) 110, 312, 425, 473, 548, 695
CviQI GTAC 1 cut(s) 768
DdeI CTNAG 3 cut(s) 404, 690, 938
DpnI GATC 3 cut(s) 86, 245, 786
DpnII GATC 3 cut(s) 84, 243, 784
DriI GACNNNNNGTC 1 cut(s) 582
Eam1104I CTCTTC 2 cut(s) 327, 881
Eam1105I GACNNNNNGTC 1 cut(s) 582
EarI CTCTTC 2 cut(s) 327, 881
EciI GGCGGA 1 cut(s) 403
Eco130I CCWWGG 2 cut(s) 42, 929
Eco24I GRGCYC 1 cut(s) 1004
Eco31I GGTCTC 1 cut(s) 565
Eco32I GATATC 1 cut(s) 430
Eco47I GGWCC 2 cut(s) 95, 722
Eco57I CTGAAG 2 cut(s) 512, 612
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 209, 237
EcoRV GATATC 1 cut(s) 430
EcoT14I CCWWGG 2 cut(s) 42, 929
EcoT22I ATGCAT 1 cut(s) 317
EcoT38I GRGCYC 1 cut(s) 1004
ErhI CCWWGG 2 cut(s) 42, 929
FaeI CATG 6 cut(s) 113, 315, 428, 476, 551, 698
FaqI GGGAC 2 cut(s) 260, 825
FatI CATG 6 cut(s) 109, 311, 424, 472, 547, 694
FauI CCCGC 4 cut(s) 53, 83, 802, 991
Fnu4HI GCNGC 5 cut(s) 36, 597, 600, 660, 951
FokI GGATG 4 cut(s) 105, 116, 130, 242
FriOI GRGCYC 1 cut(s) 1004
Fsp4HI GCNGC 5 cut(s) 36, 597, 600, 660, 951
FspBI CTAG 2 cut(s) 303, 930
GluI GCNGC 5 cut(s) 36, 597, 600, 660, 951
GsuI CTGGAG 2 cut(s) 260, 930
HaeIII GGCC 5 cut(s) 5, 176, 934, 1002, 1025
HapII CCGG 3 cut(s) 230, 417, 747
HgaI GACGC 1 cut(s) 466
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 6 cut(s) 113, 315, 428, 476, 551, 698
HindIII AAGCTT 1 cut(s) 406
HinfI GANTC 5 cut(s) 686, 836, 866, 943, 966
HpaII CCGG 3 cut(s) 230, 417, 747
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 715, 902
Hpy188I TCNGA 3 cut(s) 181, 691, 853
Hpy188III TCNNGA 3 cut(s) 71, 298, 391
Hpy8I GTNNAC 2 cut(s) 715, 902
Hpy99I CGWCG 2 cut(s) 17, 482
HpyAV CCTTC 6 cut(s) 193, 337, 372, 649, 798, 836
HpyCH4III ACNGT 2 cut(s) 667, 776
HpyCH4IV ACGT 3 cut(s) 15, 139, 288
HpyCH4V TGCA 6 cut(s) 143, 315, 534, 551, 733, 755
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 44, 531, 596, 608, 747
HpyF3I CTNAG 3 cut(s) 404, 690, 938
HpySE526I ACGT 3 cut(s) 15, 139, 288
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 6 cut(s) 113, 315, 428, 476, 551, 698
Kzo9I GATC 3 cut(s) 84, 243, 784
LguI GCTCTTC 1 cut(s) 327
LmnI GCTCC 4 cut(s) 73, 206, 746, 958
Lsp1109I GCAGC 4 cut(s) 608, 611, 671, 937
LweI GCATC 3 cut(s) 138, 152, 512
MaeI CTAG 2 cut(s) 303, 930
MaeII ACGT 3 cut(s) 15, 139, 288
MaeIII GTNAC 2 cut(s) 19, 307
MalI GATC 3 cut(s) 86, 245, 786
MboI GATC 3 cut(s) 84, 243, 784
MboII GAAGA 5 cut(s) 94, 344, 379, 898, 928
MfeI CAATTG 1 cut(s) 1027
MflI RGATCY 2 cut(s) 243, 784
MhlI GDGCHC 2 cut(s) 424, 1004
MluCI AATT 1 cut(s) 1027
MlyI GAGTC 1 cut(s) 937
MmeI TCCRAC 1 cut(s) 831
Mph1103I ATGCAT 1 cut(s) 317
MroXI GAANNNNTTC 1 cut(s) 510
MslI CAYNNNNRTG 2 cut(s) 232, 699
MspA1I CMGCKG 2 cut(s) 590, 950
MspI CCGG 3 cut(s) 230, 417, 747
MspR9I CCNGG 2 cut(s) 211, 239
MunI CAATTG 1 cut(s) 1027
Mva1269I GAATGC 1 cut(s) 315
MvaI CCWGG 2 cut(s) 211, 239
MwoI GCNNNNNNNGC 6 cut(s) 32, 44, 531, 596, 608, 747
NdeII GATC 3 cut(s) 84, 243, 784
NlaIII CATG 6 cut(s) 113, 315, 428, 476, 551, 698
NlaIV GGNNCC 7 cut(s) 96, 208, 421, 612, 723, 786, 1002
NmuCI GTSAC 2 cut(s) 19, 307
NsiI ATGCAT 1 cut(s) 317
NspI RCATGY 3 cut(s) 113, 315, 551
PaeI GCATGC 1 cut(s) 551
PciSI GCTCTTC 1 cut(s) 327
PctI GAATGC 1 cut(s) 315
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 4 cut(s) 686, 836, 866, 966
PflFI GACNNNGTC 1 cut(s) 17
PinAI ACCGGT 1 cut(s) 229
PkrI GCNGC 5 cut(s) 37, 598, 601, 661, 952
PleI GAGTC 1 cut(s) 937
PpsI GAGTC 1 cut(s) 937
PpuMI RGGWCCY 1 cut(s) 95
PshAI GACNNNNGTC 3 cut(s) 258, 305, 720
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 209, 237
PspGI CCWGG 2 cut(s) 209, 237
PspN4I GGNNCC 7 cut(s) 96, 208, 421, 612, 723, 786, 1002
PspOMI GGGCCC 1 cut(s) 1000
PspPI GGNCC 4 cut(s) 95, 722, 1000, 1001
PspPPI RGGWCCY 1 cut(s) 95
PsuI RGATCY 2 cut(s) 243, 784
PsyI GACNNNGTC 1 cut(s) 17
PvuII CAGCTG 2 cut(s) 590, 950
RsaI GTAC 1 cut(s) 769
RsaNI GTAC 1 cut(s) 768
RseI CAYNNNNRTG 2 cut(s) 232, 699
SapI GCTCTTC 1 cut(s) 327
SatI GCNGC 5 cut(s) 36, 597, 600, 660, 951
Sau3AI GATC 3 cut(s) 84, 243, 784
Sau96I GGNCC 4 cut(s) 95, 722, 1000, 1001
SchI GAGTC 1 cut(s) 937
ScrFI CCNGG 2 cut(s) 211, 239
SduI GDGCHC 2 cut(s) 424, 1004
SfaNI GCATC 3 cut(s) 138, 152, 512
SgrAI CRCCGGYG 1 cut(s) 416
SinI GGWCC 2 cut(s) 95, 722
SmiMI CAYNNNNRTG 2 cut(s) 232, 699
SphI GCATGC 1 cut(s) 551
Sse9I AATT 1 cut(s) 1027
SsiI CCGC 7 cut(s) 36, 54, 60, 90, 414, 809, 998
SspI AATATT 1 cut(s) 729
SspMI CTAG 2 cut(s) 303, 930
StyD4I CCNGG 2 cut(s) 209, 237
StyI CCWWGG 2 cut(s) 42, 929
TaaI ACNGT 2 cut(s) 667, 776
TaiI ACGT 3 cut(s) 18, 142, 291
TaqI TCGA 5 cut(s) 12, 365, 480, 677, 884
TaqII GACCGA 2 cut(s) 198, 589
TasI AATT 1 cut(s) 1027
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 4 cut(s) 686, 836, 866, 966
TscAI CASTG 3 cut(s) 28, 54, 672
TseFI GTSAC 2 cut(s) 19, 307
TseI GCWGC 4 cut(s) 596, 599, 659, 950
Tsp45I GTSAC 2 cut(s) 19, 307
TspDTI ATGAA 5 cut(s) 153, 296, 345, 351, 519
TspGWI ACGGA 2 cut(s) 248, 281
TspRI CASTG 3 cut(s) 28, 54, 672
Tth111I GACNNNGTC 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 95, 722
XagI CCTNNNNNAGG 1 cut(s) 75
XceI RCATGY 3 cut(s) 113, 315, 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XmaJI CCTAGG 1 cut(s) 929
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 2 cut(s) 303, 930
Zsp2I ATGCAT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.