Rorug02G0411300

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
52743991 .. 52744257
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0411300.1

Sequence Viewer

Length: 267 bp
ATGGTCTTAATAGCACTAGCGCTTCTAGTATCATCGATTGCAGCACAACAACAAGGAGGAGGCGCGTCGGTCTGGTTAGAGCCTCGTCGCCTACAAGACCCACAAGACCCACCTTGTCCAGCAATTGGGATTTTCATTTCGCCGCTACTACTACTACTTCAGTTCCACGCGTCCCCAGATTCAAAGAGCTCGATACCACCAACATGCTCCTCCGTCAGAGAATCATCTTCTTGGGTTCTCATGTTTCATTTTCATTTGAATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.58

Weight (kDa)

6.22

Isoelectric Point (pI)

67.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 125
AccII CGCG 2 cut(s) 65, 170
AciI CCGC 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 143
AfeI AGCGCT 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 2 cut(s) 183, 259
AluBI AGCT 1 cut(s) 189
AluI AGCT 1 cut(s) 189
Alw21I GWGCWC 1 cut(s) 191
Aor51HI AGCGCT 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 2 cut(s) 22, 65
BanII GRGCYC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 53
BfaI CTAG 2 cut(s) 17, 26
BfoI RGCGCY 1 cut(s) 23
BisI GCNGC 2 cut(s) 42, 143
BlsI GCNGC 2 cut(s) 43, 144
Bsa29I ATCGAT 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 125
BseCI ATCGAT 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 125
BseRI GAGGAG 2 cut(s) 72, 199
BseXI GCAGC 1 cut(s) 53
Bsh1236I CGCG 2 cut(s) 65, 170
BshVI ATCGAT 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 191
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 191
BspACI CCGC 1 cut(s) 143
BspDI ATCGAT 1 cut(s) 35
BspFNI CGCG 2 cut(s) 65, 170
BstFNI CGCG 2 cut(s) 65, 170
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 2 cut(s) 22, 65
BstNSI RCATGY 1 cut(s) 207
BstUI CGCG 2 cut(s) 65, 170
BstV1I GCAGC 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 35
BsuTUI ATCGAT 1 cut(s) 35
CfoI GCGC 2 cut(s) 22, 65
ClaI ATCGAT 1 cut(s) 35
CseI GACGC 2 cut(s) 54, 159
CviAII CATG 2 cut(s) 204, 241
CviJI RGCY 2 cut(s) 82, 189
CviKI_1 RGCY 2 cut(s) 82, 189
Ecl136II GAGCTC 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 191
Eco47III AGCGCT 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 191
FaeI CATG 2 cut(s) 207, 244
FaiI YATR 2 cut(s) 205, 242
FaqI GGGAC 1 cut(s) 157
FatI CATG 2 cut(s) 203, 240
Fnu4HI GCNGC 2 cut(s) 42, 143
FriOI GRGCYC 1 cut(s) 191
Fsp4HI GCNGC 2 cut(s) 42, 143
FspBI CTAG 2 cut(s) 17, 26
GlaI GCGC 2 cut(s) 21, 64
GluI GCNGC 2 cut(s) 42, 143
HaeII RGCGCY 1 cut(s) 23
HgaI GACGC 2 cut(s) 54, 159
HhaI GCGC 2 cut(s) 22, 65
Hin1II CATG 2 cut(s) 207, 244
Hin6I GCGC 2 cut(s) 20, 63
HinP1I GCGC 2 cut(s) 20, 63
HinfI GANTC 2 cut(s) 179, 221
Hpy188I TCNGA 1 cut(s) 218
Hpy99I CGWCG 2 cut(s) 70, 90
HpyCH4V TGCA 1 cut(s) 41
Hsp92II CATG 2 cut(s) 207, 244
HspAI GCGC 2 cut(s) 20, 63
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 3 cut(s) 58, 132, 189
Lsp1109I GCAGC 1 cut(s) 53
MaeI CTAG 2 cut(s) 17, 26
MboII GAAGA 1 cut(s) 219
MfeI CAATTG 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 2 cut(s) 123, 259
MluI ACGCGT 1 cut(s) 168
MnlI CCTC 4 cut(s) 50, 53, 93, 220
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 202
MunI CAATTG 1 cut(s) 123
MvnI CGCG 2 cut(s) 65, 170
NlaIII CATG 2 cut(s) 207, 244
NspI RCATGY 1 cut(s) 207
PfeI GAWTC 2 cut(s) 179, 221
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 2 cut(s) 43, 144
Psp124BI GAGCTC 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 202
SacI GAGCTC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 2 cut(s) 42, 143
SduI GDGCHC 1 cut(s) 191
SetI ASST 2 cut(s) 115, 191
SmiMI CAYNNNNRTG 1 cut(s) 202
Sse9I AATT 2 cut(s) 123, 259
SsiI CCGC 1 cut(s) 143
SspMI CTAG 2 cut(s) 17, 26
SstI GAGCTC 1 cut(s) 191
TaqI TCGA 2 cut(s) 35, 191
TaqII GACCGA 1 cut(s) 58
TasI AATT 2 cut(s) 123, 259
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 2 cut(s) 179, 221
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 124, 236, 242
TspGWI ACGGA 1 cut(s) 202
Van91I CCANNNNNTGG 1 cut(s) 125
XceI RCATGY 1 cut(s) 207
XspI CTAG 2 cut(s) 17, 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.