Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000427.1

Orthogroup ID

OG0000169

Physical Location & Seq

Genomic Coordinates Forward (+)

110255 .. 114814

Gene Structure 4560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000427.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

atggctgccttggtgttgcacaacgccgtttcgggtggcggtggagcaggccgggcgggatgcatgacgagccacgacgtcgtcgtcggagggagcttggagagctacaggtactacgtgtctcgtcgtacggtgatggagatgctgagcgaccgaggctacaacgtcgccgactcggacctcactcgctcactcactgagttccgtaccgcgttcggccaaaaccctgacctcgaccacctcaccatctgcgcctctctccgctccaattccaagaacaagatctctgaactgctggtcaatgttacaaagcatgttttacagccaaagtatgagatactttctgctgaagaaaagaaacatctgctaaggaagtacaagttggaagacaagaagctccctctcatgctggaaaccgatgcatttgcacgctactatggattggagaagggacaggtgacggcagtcttgtcgtctctcaacgatctctactcctcaatggcttccatcgacgttgtgactgctaggtttgctgcctctctggcacttgctgacgggggaaacgcccctgatttggggaagcttggaggaggttcggctcgtaggattcaagcacgagcaaataaccgcttcctgttttcatttggttctgtccgggatcgaaacaaggttcttaagggtggggtgtggtgttatgatagggctccggtctgtctggaagaatatgatggtgttctctccattgtggacatccctatgaagcacatcagaatttgggttagggtttctggtgtccctcctctctatgaggaacaggaaaacctcatacttattgggaatcttctcgggggctatttggattacgacaagaaggagttccgtaaaggtagcatccgcatcttgttctctcatgatgtttctaaacccgttctattggagcgtcgagttttcttggctccaggtgttgagccgatattgcaattccagtttgaacatctccagggtcgctgccctcattgtggactagttacgcacgttggagagaagtgtgaggaacccaatgctgttatttcgacccttagggttttgaaatttggtggtagtcctgtcacctctggcggagttttctctttcttagcccaaaatagtcgagatctgcatatgccctcgtctaccctactgaagaagaagacgaaaccagttattcggcgaatggaaagatcatcttctgaatctgctgctcaggaggatacagtggctaacaaggtagacttggtacatataagctgtgatgttgggttgcaggatcaagctactgcgttggtttcgatgatagcatctgaacctgggtcagatgccctaattgttactactgggactcctgtggagaagcaagttttgatctacaagaagcgagggcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0030880 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0055029 GO:0061695 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

474

Amino Acids

52.15

Weight (kDa)

9.0

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis	RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata	RLG00000007550 RLG00000036731
rosa_multiflora	Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii	Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa	Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha	Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AatII	GACGTC	1 cut(s)	81
AccBSI	CCGCTC	1 cut(s)	264
AccI	GTMKAC	2 cut(s)	1172, 1269
AccII	CGCG	1 cut(s)	212
AciI	CCGC	7 cut(s)	39, 56, 210, 262, 628, 895, 1119
AclWI	GGATC	2 cut(s)	666, 1314
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	771, 1091
AcuI	CTGAAG	2 cut(s)	369, 1202
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	5 cut(s)	113, 130, 208, 377, 1278
AfiI	CCNNNNNNNGG	3 cut(s)	574, 575, 1019
AflII	CTTAAG	1 cut(s)	674
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	3 cut(s)	611, 992, 1090
AhlI	ACTAGT	1 cut(s)	1024
AjnI	CCWGG	3 cut(s)	958, 999, 1345
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	6 cut(s)	96, 105, 397, 583, 1287, 1313
AluI	AGCT	6 cut(s)	96, 105, 397, 583, 1287, 1313
Alw26I	GTCTC	2 cut(s)	126, 480
AlwI	GGATC	2 cut(s)	666, 1314
Ama87I	CYCGRG	1 cut(s)	845
AoxI	GGCC	2 cut(s)	49, 217
ApeKI	GCWGC	4 cut(s)	5, 533, 1008, 1238
ApoI	RAATTY	2 cut(s)	771, 1091
Asp700I	GAANNNNTTC	1 cut(s)	875
AspLEI	GCGC	2 cut(s)	254, 1422
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	2 cut(s)	53, 656
AsuHPI	GGTGA	4 cut(s)	145, 235, 469, 1102
AvaI	CYCGRG	1 cut(s)	845
AvaII	GGWCC	1 cut(s)	178
AxyI	CCTNAGG	1 cut(s)	1079
BanII	GRGCYC	1 cut(s)	706
BauI	CACGAG	1 cut(s)	615
BbsI	GAAGAC	2 cut(s)	393, 1196
BbvI	GCAGC	3 cut(s)	520, 995, 1225
BccI	CCATC	4 cut(s)	130, 254, 515, 722
BceAI	ACGGC	2 cut(s)	11, 477
BcgI	CGANNNNNNTGC	4 cut(s)	407, 441, 453, 487
BciT130I	CCWGG	3 cut(s)	960, 1001, 1347
BciVI	GTATCC	1 cut(s)	1243
BcnI	CCSGG	2 cut(s)	53, 656
BcoDI	GTCTC	2 cut(s)	126, 480
BcuI	ACTAGT	1 cut(s)	1024
BfaI	CTAG	3 cut(s)	525, 1025, 1423
BfmI	CTRYAG	1 cut(s)	106
BfoI	RGCGCY	1 cut(s)	1423
BfrI	CTTAAG	1 cut(s)	674
BfuI	GTATCC	1 cut(s)	1243
BglI	GCCNNNNNGGC	1 cut(s)	542
BglII	AGATCT	2 cut(s)	282, 1153
BisI	GCNGC	4 cut(s)	6, 534, 1009, 1239
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	4 cut(s)	7, 535, 1010, 1240
Bme1390I	CCNGG	5 cut(s)	53, 656, 960, 1001, 1347
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	845
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	3 cut(s)	705, 957, 1056
BmrFI	CCNGG	5 cut(s)	53, 656, 960, 1001, 1347
BmrI	ACTGGG	1 cut(s)	1383
BmsI	GCATC	7 cut(s)	50, 132, 409, 900, 906, 1345, 1346
BmuI	ACTGGG	1 cut(s)	1383
BoxI	GACNNNNGTC	1 cut(s)	464
BpiI	GAAGAC	2 cut(s)	393, 1196
BpmI	CTGGAG	2 cut(s)	942, 983
Bpu10I	CCTNAGC	2 cut(s)	368, 1242
Bpu1102I	GCTNAGC	1 cut(s)	146
BpuMI	CCSGG	2 cut(s)	53, 656
BsaAI	YACGTR	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	4 cut(s)	9, 154, 1000, 1346
BsaWI	WCCGGW	1 cut(s)	706
BsaXI	ACNNNNNCTCC	2 cut(s)	1363, 1393
Bsc4I	CCNNNNNNNGG	3 cut(s)	574, 575, 1019
Bse1I	ACTGG	3 cut(s)	985, 1199, 1378
Bse21I	CCTNAGG	1 cut(s)	1079
BseBI	CCWGG	3 cut(s)	960, 1001, 1347
BseDI	CCNNGG	4 cut(s)	9, 154, 1000, 1346
BseGI	GGATG	3 cut(s)	65, 750, 891
BseLI	CCNNNNNNNGG	3 cut(s)	574, 575, 1019
BseMII	CTCAG	3 cut(s)	137, 189, 1256
BseNI	ACTGG	3 cut(s)	985, 1199, 1378
BseRI	GAGGAG	3 cut(s)	484, 603, 789
BseXI	GCAGC	3 cut(s)	520, 995, 1225
Bsh1236I	CGCG	1 cut(s)	212
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	51, 219
BsiEI	CGRYCG	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	845
BsiSI	CCGG	3 cut(s)	52, 655, 707
BsiWI	CGTACG	1 cut(s)	128
BslFI	GGGAC	3 cut(s)	465, 779, 1390
BslI	CCNNNNNNNGG	3 cut(s)	574, 575, 1019
BsmAI	GTCTC	2 cut(s)	126, 480
BsmBI	CGTCTC	1 cut(s)	480
BsmFI	GGGAC	3 cut(s)	465, 779, 1390
BsnI	GGCC	2 cut(s)	51, 219
BsoBI	CYCGRG	1 cut(s)	845
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp143I	GATC	7 cut(s)	282, 484, 658, 1153, 1220, 1306, 1401
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	7 cut(s)	39, 56, 210, 262, 628, 895, 1119
BspANI	GGCC	2 cut(s)	51, 219
BspCNI	CTCAG	3 cut(s)	138, 190, 1255
BspFNI	CGCG	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	910
BspLI	GGNNCC	3 cut(s)	705, 957, 1056
BspPI	GGATC	2 cut(s)	666, 1314
BspTI	CTTAAG	1 cut(s)	674
BsrBI	CCGCTC	1 cut(s)	264
BsrI	ACTGG	3 cut(s)	985, 1199, 1378
BssECI	CCNNGG	4 cut(s)	9, 154, 1000, 1346
BssMI	GATC	7 cut(s)	282, 484, 658, 1153, 1220, 1306, 1401
BssNI	GRCGYC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	615
BssT1I	CCWWGG	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	615
Bst2UI	CCWGG	3 cut(s)	960, 1001, 1347
Bst4CI	ACNGT	2 cut(s)	133, 1255
BstACI	GRCGYC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	674
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	49, 430
BstDEI	CTNAG	6 cut(s)	146, 198, 368, 1079, 1135, 1242
BstF5I	GGATG	3 cut(s)	65, 750, 891
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	1 cut(s)	1423
BstHHI	GCGC	2 cut(s)	254, 1422
BstKTI	GATC	7 cut(s)	285, 487, 661, 1156, 1223, 1309, 1404
BstMAI	GTCTC	2 cut(s)	126, 480
BstMBI	GATC	7 cut(s)	282, 484, 658, 1153, 1220, 1306, 1401
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 69, 102, 156, 530, 542, 976
BstNI	CCWGG	3 cut(s)	960, 1001, 1347
BstNSI	RCATGY	1 cut(s)	317
BstPAI	GACNNNNGTC	1 cut(s)	464
BstSCI	CCNGG	5 cut(s)	51, 654, 958, 999, 1345
BstSFI	CTRYAG	1 cut(s)	106
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	3 cut(s)	520, 995, 1225
BstV2I	GAAGAC	2 cut(s)	393, 1196
BstX2I	RGATCY	2 cut(s)	282, 1153
BstYI	RGATCY	2 cut(s)	282, 1153
Bsu36I	CCTNAGG	1 cut(s)	1079
BsuI	GTATCC	1 cut(s)	1243
BsuRI	GGCC	2 cut(s)	51, 219
BtsCI	GGATG	3 cut(s)	65, 750, 891
BtsIMutI	CAGTG	2 cut(s)	195, 1260
Cac8I	GCNNGC	2 cut(s)	49, 430
CciI	TCATGA	1 cut(s)	910
CfoI	GCGC	2 cut(s)	254, 1422
Cfr13I	GGNCC	1 cut(s)	178
CseI	GACGC	1 cut(s)	929
Csp6I	GTAC	5 cut(s)	112, 129, 207, 376, 1277
CviAII	CATG	4 cut(s)	64, 314, 406, 911
CviQI	GTAC	5 cut(s)	112, 129, 207, 376, 1277
DdeI	CTNAG	6 cut(s)	146, 198, 368, 1079, 1135, 1242
DpnI	GATC	7 cut(s)	284, 486, 660, 1155, 1222, 1308, 1403
DpnII	GATC	7 cut(s)	282, 484, 658, 1153, 1220, 1306, 1401
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	217
EciI	GGCGGA	1 cut(s)	1134
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	706
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	2 cut(s)	369, 1202
Eco81I	CCTNAGG	1 cut(s)	1079
Eco88I	CYCGRG	1 cut(s)	845
EcoRII	CCWGG	3 cut(s)	958, 999, 1345
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	2 cut(s)	65, 424
EcoT38I	GRGCYC	1 cut(s)	706
ErhI	CCWWGG	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	480
FaeI	CATG	4 cut(s)	67, 317, 409, 914
FalI	AAGNNNNNCTT	4 cut(s)	1210, 1242, 1256, 1288
FaqI	GGGAC	3 cut(s)	465, 779, 1390
FatI	CATG	4 cut(s)	63, 313, 405, 910
FauI	CCCGC	1 cut(s)	49
FauNDI	CATATG	1 cut(s)	1161
FblI	GTMKAC	2 cut(s)	1172, 1269
Fnu4HI	GCNGC	4 cut(s)	6, 534, 1009, 1239
FokI	GGATG	3 cut(s)	72, 737, 878
FriOI	GRGCYC	1 cut(s)	706
Fsp4HI	GCNGC	4 cut(s)	6, 534, 1009, 1239
FspBI	CTAG	3 cut(s)	525, 1025, 1423
GlaI	GCGC	2 cut(s)	253, 1421
GluI	GCNGC	4 cut(s)	6, 534, 1009, 1239
GsuI	CTGGAG	2 cut(s)	942, 983
HaeII	RGCGCY	1 cut(s)	1423
HaeIII	GGCC	2 cut(s)	51, 219
HapII	CCGG	3 cut(s)	52, 655, 707
HgaI	GACGC	1 cut(s)	929
HhaI	GCGC	2 cut(s)	254, 1422
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	67, 317, 409, 914
Hin6I	GCGC	2 cut(s)	252, 1420
HinP1I	GCGC	2 cut(s)	252, 1420
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	5 cut(s)	173, 607, 838, 1232, 1378
HpaII	CCGG	3 cut(s)	52, 655, 707
HphI	GGTGA	4 cut(s)	145, 235, 469, 1102
Hpy166II	GTNNAC	4 cut(s)	748, 1022, 1173, 1270
Hpy188I	TCNGA	7 cut(s)	89, 178, 289, 770, 1231, 1342, 1354
Hpy188III	TCNNGA	4 cut(s)	716, 911, 1151, 1244
Hpy8I	GTNNAC	4 cut(s)	748, 1022, 1173, 1270
Hpy99I	CGWCG	8 cut(s)	80, 83, 86, 89, 129, 170, 515, 945
HpyAV	CCTTC	2 cut(s)	442, 865
HpyCH4III	ACNGT	2 cut(s)	133, 1255
HpyCH4IV	ACGT	5 cut(s)	78, 117, 165, 513, 1035
HpyCH4V	TGCA	7 cut(s)	19, 63, 422, 428, 979, 1159, 1303
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 69, 102, 156, 530, 542, 976
HpyF3I	CTNAG	6 cut(s)	146, 198, 368, 1079, 1135, 1242
HpySE526I	ACGT	5 cut(s)	78, 117, 165, 513, 1035
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	67, 317, 409, 914
HspAI	GCGC	2 cut(s)	252, 1420
Kzo9I	GATC	7 cut(s)	282, 484, 658, 1153, 1220, 1306, 1401
LmnI	GCTCC	7 cut(s)	44, 93, 269, 402, 709, 937, 961
Lsp1109I	GCAGC	3 cut(s)	520, 995, 1225
LweI	GCATC	7 cut(s)	50, 132, 409, 900, 906, 1345, 1346
MaeI	CTAG	3 cut(s)	525, 1025, 1423
MaeII	ACGT	5 cut(s)	78, 117, 165, 513, 1035
MaeIII	GTNAC	6 cut(s)	304, 457, 517, 1027, 1108, 1366
MalI	GATC	7 cut(s)	284, 486, 660, 1155, 1222, 1308, 1403
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	7 cut(s)	282, 484, 658, 1153, 1220, 1306, 1401
MboII	GAAGA	8 cut(s)	362, 398, 731, 833, 1195, 1198, 1201, 1218
MflI	RGATCY	2 cut(s)	282, 1153
MhlI	GDGCHC	1 cut(s)	706
MluCI	AATT	5 cut(s)	268, 771, 980, 1091, 1362
MlyI	GAGTC	2 cut(s)	167, 1372
MmeI	TCCRAC	3 cut(s)	67, 363, 1018
Mph1103I	ATGCAT	2 cut(s)	65, 424
MroXI	GAANNNNTTC	1 cut(s)	875
MseI	TTAA	1 cut(s)	675
MslI	CAYNNNNRTG	1 cut(s)	755
MspCI	CTTAAG	1 cut(s)	674
MspI	CCGG	3 cut(s)	52, 655, 707
MspR9I	CCNGG	5 cut(s)	53, 656, 960, 1001, 1347
MvaI	CCWGG	3 cut(s)	960, 1001, 1347
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	7 cut(s)	53, 69, 102, 156, 530, 542, 976
NciI	CCSGG	2 cut(s)	53, 656
NdeI	CATATG	1 cut(s)	1161
NdeII	GATC	7 cut(s)	282, 484, 658, 1153, 1220, 1306, 1401
NlaIII	CATG	4 cut(s)	67, 317, 409, 914
NlaIV	GGNNCC	3 cut(s)	705, 957, 1056
NmuCI	GTSAC	3 cut(s)	457, 517, 1108
NsiI	ATGCAT	2 cut(s)	65, 424
NspI	RCATGY	1 cut(s)	317
PagI	TCATGA	1 cut(s)	910
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	875
PfeI	GAWTC	3 cut(s)	607, 838, 1232
Pfl23II	CGTACG	1 cut(s)	128
PflFI	GACNNNGTC	1 cut(s)	80
PfoI	TCCNGGA	1 cut(s)	654
PkrI	GCNGC	4 cut(s)	7, 535, 1010, 1240
PleI	GAGTC	2 cut(s)	167, 1372
PpsI	GAGTC	2 cut(s)	167, 1372
Ppu21I	YACGTR	1 cut(s)	118
PshAI	GACNNNNGTC	1 cut(s)	464
Psp6I	CCWGG	3 cut(s)	958, 999, 1345
PspGI	CCWGG	3 cut(s)	958, 999, 1345
PspLI	CGTACG	1 cut(s)	128
PspN4I	GGNNCC	3 cut(s)	705, 957, 1056
PspPI	GGNCC	1 cut(s)	178
PsuI	RGATCY	2 cut(s)	282, 1153
PsyI	GACNNNGTC	1 cut(s)	80
RsaI	GTAC	5 cut(s)	113, 130, 208, 377, 1278
RsaNI	GTAC	5 cut(s)	112, 129, 207, 376, 1277
RseI	CAYNNNNRTG	1 cut(s)	755
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	4 cut(s)	6, 534, 1009, 1239
Sau3AI	GATC	7 cut(s)	282, 484, 658, 1153, 1220, 1306, 1401
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	2 cut(s)	167, 1372
ScrFI	CCNGG	5 cut(s)	53, 656, 960, 1001, 1347
SduI	GDGCHC	1 cut(s)	706
SfaNI	GCATC	7 cut(s)	50, 132, 409, 900, 906, 1345, 1346
SfcI	CTRYAG	1 cut(s)	106
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	755
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
SpeI	ACTAGT	1 cut(s)	1024
Sse9I	AATT	5 cut(s)	268, 771, 980, 1091, 1362
SsiI	CCGC	7 cut(s)	39, 56, 210, 262, 628, 895, 1119
SspMI	CTAG	3 cut(s)	525, 1025, 1423
StyD4I	CCNGG	5 cut(s)	51, 654, 958, 999, 1345
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	133, 1255
TaiI	ACGT	5 cut(s)	81, 120, 168, 516, 1038
TaqI	TCGA	7 cut(s)	234, 510, 661, 943, 1073, 1150, 1328
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	5 cut(s)	268, 771, 980, 1091, 1362
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	3 cut(s)	607, 838, 1232
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	2 cut(s)	202, 1260
TseFI	GTSAC	3 cut(s)	457, 517, 1108
TseI	GCWGC	4 cut(s)	5, 533, 1008, 1238
Tsp45I	GTSAC	3 cut(s)	457, 517, 1108
TspDTI	ATGAA	2 cut(s)	630, 773
TspGWI	ACGGA	2 cut(s)	194, 869
TspRI	CASTG	2 cut(s)	202, 1260
Tth111I	GACNNNGTC	1 cut(s)	80
Vha464I	CTTAAG	1 cut(s)	674
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	2 cut(s)	771, 1091
XceI	RCATGY	1 cut(s)	317
XmiI	GTMKAC	2 cut(s)	1172, 1269
XmnI	GAANNNNTTC	1 cut(s)	875
XspI	CTAG	3 cut(s)	525, 1025, 1423
ZraI	GACGTC	1 cut(s)	79
Zsp2I	ATGCAT	2 cut(s)	65, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.