Rmu_sc0001225.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001225.1
OG0000169
Physical Location & Seq
Forward (+)
27204 .. 28361
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001225.1_g000003.1.cds

Sequence Viewer

Length: 966 bp
atggcctttattgacgttgtcactgctagcatccatgcctcccttgcgtttgccaagggaggtagtgctcctgatctggggagaattgccttcaaagcccacttccttcggacttggatggtggataaaggttttagggttcaagtgcgggctagaaatcttttcttgttctcgtttgaatctgcttgtgaacgcatcaaggttttgcagggtggggtttggtgctttgaccgagcttttgtttgtcttgaggagtatgacggtgtcaaatctctccaagaagtccctctcaaacatgtttgtttttgggacgttagggttcctgggatccctcccttatatgaagaaccgaaaacttcacccttattggcaatctgttgggtgattttctggactacgacaaggagttcagaaaatggcttgatcgctatcgtatttgcccatgacgttactaaaccagtattgcttgagcgcgcagtctttctagatgttggtgttgaaccaatcttgcagttccagtttaagcacctgaaagggaggtcccctcaatgtggtttgatcacacatgctagagccaagtgtgaggagcctagcattgcaatctcagcgtccaggcccctcgactttagaaggctccttctccttcttagtacagaaccgtttagaggtagaaaggaggctacagttgaattttccgtagagcaggttgtggagcatgtgcagaatgtggtactggagcctacttcagggactggcattagcttgcatgaacctgcaaaagcagtgcaacctgtgcagatggaggccctgccctccaagaaaagaaagcgaagtagtagatgtagcccctcccccaaggaatttaaaactatcttgggcggtaagcttcctgctttggagactgaagctctaggcttggtagaagaagacactgatatcgcatgggtgaagctaaagaaaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

321

Amino Acids

35.89

Weight (kDa)

8.97

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 694, 781
AccII CGCG 1 cut(s) 474
AciI CCGC 2 cut(s) 148, 879
AclWI GGATC 2 cut(s) 322, 335
AcsI RAATTY 2 cut(s) 689, 860
AcuI CTGAAG 2 cut(s) 729, 924
AfaI GTAC 2 cut(s) 652, 732
AfiI CCNNNNNNNGG 4 cut(s) 77, 551, 665, 746
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 5 cut(s) 94, 143, 179, 500, 689
AjnI CCWGG 2 cut(s) 322, 611
AluBI AGCT 5 cut(s) 236, 762, 886, 908, 952
AluI AGCT 5 cut(s) 236, 762, 886, 908, 952
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 893
AlwI GGATC 2 cut(s) 322, 335
AlwNI CAGNNNCTG 1 cut(s) 752
AoxI GGCC 3 cut(s) 3, 614, 804
ApoI RAATTY 2 cut(s) 689, 860
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
AspLEI GCGC 2 cut(s) 474, 476
AspS9I GGNCC 3 cut(s) 540, 615, 805
AsuHPI GGTGA 3 cut(s) 351, 394, 958
AsuNHI GCTAGC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 540
BamHI GGATCC 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 933
Bbv12I GWGCWC 1 cut(s) 70
BccI CCATC 2 cut(s) 112, 793
BciT130I CCWGG 2 cut(s) 324, 613
BclI TGATCA 1 cut(s) 558
BcoDI GTCTC 1 cut(s) 893
BfaI CTAG 6 cut(s) 27, 153, 485, 570, 591, 911
BfmI CTRYAG 1 cut(s) 681
BfuAI ACCTGC 2 cut(s) 694, 781
Bme1390I CCNGG 2 cut(s) 324, 613
Bme18I GGWCC 1 cut(s) 540
BmgT120I GGNCC 3 cut(s) 540, 615, 805
BmiI GGNNCC 7 cut(s) 321, 329, 542, 588, 617, 635, 738
BmrFI CCNGG 2 cut(s) 324, 613
BmsI GCATC 2 cut(s) 39, 204
BmtI GCTAGC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 933
BplI GAGNNNNNCTC 2 cut(s) 529, 561
BpmI CTGGAG 1 cut(s) 755
BpuEI CTTGAG 2 cut(s) 269, 488
BsaBI GATNNNNATC 1 cut(s) 428
BsaJI CCNNGG 3 cut(s) 54, 323, 855
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 551, 665, 746
Bse1I ACTGG 4 cut(s) 458, 517, 738, 757
Bse3DI GCAATG 1 cut(s) 594
Bse8I GATNNNNATC 1 cut(s) 428
BseBI CCWGG 2 cut(s) 324, 613
BseDI CCNNGG 3 cut(s) 54, 323, 855
BseGI GGATG 2 cut(s) 30, 123
BseJI GATNNNNATC 1 cut(s) 428
BseLI CCNNNNNNNGG 4 cut(s) 77, 551, 665, 746
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 4 cut(s) 458, 517, 738, 757
BsePI GCGCGC 1 cut(s) 472
BseRI GAGGAG 2 cut(s) 266, 599
BsgI GTGCAG 2 cut(s) 740, 815
Bsh1236I CGCG 1 cut(s) 474
BshFI GGCC 3 cut(s) 5, 616, 806
BsiHKAI GWGCWC 1 cut(s) 70
BslFI GGGAC 4 cut(s) 269, 323, 526, 763
BslI CCNNNNNNNGG 4 cut(s) 77, 551, 665, 746
BsmAI GTCTC 1 cut(s) 893
BsmFI GGGAC 4 cut(s) 269, 323, 526, 763
BsnI GGCC 3 cut(s) 5, 616, 806
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 4 cut(s) 73, 327, 423, 558
BspACI CCGC 2 cut(s) 148, 879
BspANI GGCC 3 cut(s) 5, 616, 806
BspCNI CTCAG 1 cut(s) 617
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 7 cut(s) 321, 329, 542, 588, 617, 635, 738
BspMI ACCTGC 2 cut(s) 694, 781
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 2 cut(s) 322, 335
BsrDI GCAATG 1 cut(s) 594
BsrI ACTGG 4 cut(s) 458, 517, 738, 757
BssECI CCNNGG 3 cut(s) 54, 323, 855
BssHII GCGCGC 1 cut(s) 472
BssMI GATC 4 cut(s) 73, 327, 423, 558
BssT1I CCWWGG 2 cut(s) 54, 855
Bst2UI CCWGG 2 cut(s) 324, 613
Bst4CI ACNGT 3 cut(s) 263, 660, 685
BstAPI GCANNNNNTGC 1 cut(s) 793
BstC8I GCNNGC 4 cut(s) 28, 150, 474, 764
BstDEI CTNAG 2 cut(s) 604, 647
BstENI CCTNNNNNAGG 1 cut(s) 744
BstF5I GGATG 2 cut(s) 30, 123
BstFNI CGCG 1 cut(s) 474
BstHHI GCGC 2 cut(s) 474, 476
BstKTI GATC 4 cut(s) 76, 330, 426, 561
BstMAI GTCTC 1 cut(s) 893
BstMBI GATC 4 cut(s) 73, 327, 423, 558
BstMWI GCNNNNNNNGC 4 cut(s) 44, 95, 605, 793
BstNI CCWGG 2 cut(s) 324, 613
BstNSI RCATGY 3 cut(s) 299, 569, 719
BstSCI CCNGG 2 cut(s) 322, 611
BstSFI CTRYAG 1 cut(s) 681
BstUI CGCG 1 cut(s) 474
BstV2I GAAGAC 1 cut(s) 933
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BsuRI GGCC 3 cut(s) 5, 616, 806
BtsCI GGATG 2 cut(s) 30, 123
BtsI GCAGTG 2 cut(s) 21, 789
BtsIMutI CAGTG 3 cut(s) 21, 789, 930
BveI ACCTGC 2 cut(s) 694, 781
Cac8I GCNNGC 4 cut(s) 28, 150, 474, 764
CaiI CAGNNNCTG 1 cut(s) 752
CfoI GCGC 2 cut(s) 474, 476
Cfr13I GGNCC 3 cut(s) 540, 615, 805
CseI GACGC 1 cut(s) 597
Csp6I GTAC 2 cut(s) 651, 731
CviAII CATG 7 cut(s) 35, 296, 443, 566, 716, 767, 942
CviQI GTAC 2 cut(s) 651, 731
DdeI CTNAG 2 cut(s) 604, 647
DpnI GATC 4 cut(s) 75, 329, 425, 560
DpnII GATC 4 cut(s) 73, 327, 423, 558
DraI TTTAAA 1 cut(s) 865
Eco130I CCWWGG 2 cut(s) 54, 855
Eco32I GATATC 1 cut(s) 937
Eco47I GGWCC 1 cut(s) 540
Eco57I CTGAAG 2 cut(s) 729, 924
EcoNI CCTNNNNNAGG 1 cut(s) 744
EcoO109I RGGNCCY 3 cut(s) 540, 615, 805
EcoRII CCWGG 2 cut(s) 322, 611
EcoRV GATATC 1 cut(s) 937
EcoT14I CCWWGG 2 cut(s) 54, 855
ErhI CCWWGG 2 cut(s) 54, 855
FaeI CATG 7 cut(s) 38, 299, 446, 569, 719, 770, 945
FaqI GGGAC 4 cut(s) 269, 323, 526, 763
FatI CATG 7 cut(s) 34, 295, 442, 565, 715, 766, 941
FauI CCCGC 1 cut(s) 141
FbaI TGATCA 1 cut(s) 558
FokI GGATG 2 cut(s) 17, 130
FspBI CTAG 6 cut(s) 27, 153, 485, 570, 591, 911
GlaI GCGC 2 cut(s) 473, 475
GsuI CTGGAG 1 cut(s) 755
HaeIII GGCC 3 cut(s) 5, 616, 806
HgaI GACGC 1 cut(s) 597
HhaI GCGC 2 cut(s) 474, 476
Hin1II CATG 7 cut(s) 38, 299, 446, 569, 719, 770, 945
Hin6I GCGC 2 cut(s) 472, 474
HinP1I GCGC 2 cut(s) 472, 474
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 1 cut(s) 179
HphI GGTGA 3 cut(s) 351, 394, 958
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 111, 412
Hpy188III TCNNGA 4 cut(s) 71, 248, 391, 485
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 5 cut(s) 100, 116, 624, 647, 653
HpyCH4III ACNGT 3 cut(s) 263, 660, 685
HpyCH4IV ACGT 3 cut(s) 15, 312, 447
HpyCH4V TGCA 8 cut(s) 208, 511, 599, 721, 766, 776, 787, 796
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 95, 605, 793
HpyF3I CTNAG 2 cut(s) 604, 647
HpySE526I ACGT 3 cut(s) 15, 312, 447
Hsp92II CATG 7 cut(s) 38, 299, 446, 569, 719, 770, 945
HspAI GCGC 2 cut(s) 472, 474
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 4 cut(s) 73, 327, 423, 558
LmnI GCTCC 5 cut(s) 73, 586, 639, 712, 736
LweI GCATC 2 cut(s) 39, 204
MaeI CTAG 6 cut(s) 27, 153, 485, 570, 591, 911
MaeII ACGT 3 cut(s) 15, 312, 447
MaeIII GTNAC 2 cut(s) 19, 448
MalI GATC 4 cut(s) 75, 329, 425, 560
MboI GATC 4 cut(s) 73, 327, 423, 558
MboII GAAGA 3 cut(s) 356, 935, 938
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 3 cut(s) 84, 689, 860
MseI TTAA 2 cut(s) 522, 864
MspR9I CCNGG 2 cut(s) 324, 613
MvaI CCWGG 2 cut(s) 324, 613
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 4 cut(s) 44, 95, 605, 793
NdeII GATC 4 cut(s) 73, 327, 423, 558
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 7 cut(s) 38, 299, 446, 569, 719, 770, 945
NlaIV GGNNCC 7 cut(s) 321, 329, 542, 588, 617, 635, 738
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 3 cut(s) 299, 569, 719
PauI GCGCGC 1 cut(s) 472
PciI ACATGT 1 cut(s) 295
PfeI GAWTC 1 cut(s) 179
PflFI GACNNNGTC 2 cut(s) 17, 263
PpuMI RGGWCCY 1 cut(s) 540
PscI ACATGT 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 540
Psp6I CCWGG 2 cut(s) 322, 611
PspGI CCWGG 2 cut(s) 322, 611
PspN4I GGNNCC 7 cut(s) 321, 329, 542, 588, 617, 635, 738
PspPI GGNCC 3 cut(s) 540, 615, 805
PspPPI RGGWCCY 1 cut(s) 540
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 1 cut(s) 327
PsyI GACNNNGTC 2 cut(s) 17, 263
PteI GCGCGC 1 cut(s) 472
RsaI GTAC 2 cut(s) 652, 732
RsaNI GTAC 2 cut(s) 651, 731
SaqAI TTAA 2 cut(s) 522, 864
Sau3AI GATC 4 cut(s) 73, 327, 423, 558
Sau96I GGNCC 3 cut(s) 540, 615, 805
ScrFI CCNGG 2 cut(s) 324, 613
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 2 cut(s) 39, 204
SfcI CTRYAG 1 cut(s) 681
SinI GGWCC 1 cut(s) 540
SmlI CTYRAG 2 cut(s) 248, 467
SmoI CTYRAG 2 cut(s) 248, 467
Sse9I AATT 3 cut(s) 84, 689, 860
SsiI CCGC 2 cut(s) 148, 879
SspMI CTAG 6 cut(s) 27, 153, 485, 570, 591, 911
StyD4I CCNGG 2 cut(s) 322, 611
StyI CCWWGG 2 cut(s) 54, 855
TaaI ACNGT 3 cut(s) 263, 660, 685
TaiI ACGT 3 cut(s) 18, 315, 450
TaqI TCGA 1 cut(s) 621
TaqII GACCGA 1 cut(s) 246
TasI AATT 3 cut(s) 84, 689, 860
TatI WGTACW 1 cut(s) 650
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 2 cut(s) 522, 864
Tru9I TTAA 2 cut(s) 522, 864
TscAI CASTG 3 cut(s) 28, 789, 937
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 357, 783
TspGWI ACGGA 1 cut(s) 685
TspRI CASTG 3 cut(s) 28, 789, 937
Tth111I GACNNNGTC 2 cut(s) 17, 263
VpaK11BI GGWCC 1 cut(s) 540
XagI CCTNNNNNAGG 1 cut(s) 744
XapI RAATTY 2 cut(s) 689, 860
XbaI TCTAGA 1 cut(s) 484
XceI RCATGY 3 cut(s) 299, 569, 719
XspI CTAG 6 cut(s) 27, 153, 485, 570, 591, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.