Rroxscaffold_3G00222700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000169
Physical Location & Seq
Reverse (-)
5741558 .. 5745796
4239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222700.1

Sequence Viewer

Length: 159 bp
ATGGCTTCCATTGACGCCGTCACAGCTAGCTTTGCGGCCTCCTTGGCTCTTGTTGAGGGTAGTCAAGCCCCGACCTTGGAAAAATTGAGTGACAAAATAATTAGTATGATGACAATAGCCACGCCCCTCACTTGTTATAGCAAAGAAGATCTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.41

Weight (kDa)

4.3

Isoelectric Point (pI)

15.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 76
AluBI AGCT 2 cut(s) 26, 30
AluI AGCT 2 cut(s) 26, 30
AoxI GGCC 1 cut(s) 36
AsuNHI GCTAGC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 2
BfaI CTAG 1 cut(s) 27
BglI GCCNNNNNGGC 1 cut(s) 44
BglII AGATCT 1 cut(s) 148
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmtI GCTAGC 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 42, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 42, 75
BseLI CCNNNNNNNGG 1 cut(s) 76
BshFI GGCC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 76
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 38
BspOI GCTAGC 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 42, 75
BssMI GATC 1 cut(s) 148
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 42, 75
BstACI GRCGYC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 28
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 44
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 28
CseI GACGC 1 cut(s) 23
CviJI RGCY 7 cut(s) 5, 26, 30, 38, 47, 68, 119
CviKI_1 RGCY 7 cut(s) 5, 26, 30, 38, 47, 68, 119
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 42, 75
EcoT14I CCWWGG 2 cut(s) 42, 75
ErhI CCWWGG 2 cut(s) 42, 75
FaiI YATR 2 cut(s) 107, 138
FalI AAGNNNNNCTT 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 38
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 44
Hsp92I GRCGYC 1 cut(s) 15
Kzo9I GATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 27
MaeIII GTNAC 2 cut(s) 19, 89
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 1 cut(s) 158
MflI RGATCY 1 cut(s) 148
MluCI AATT 2 cut(s) 83, 99
MnlI CCTC 3 cut(s) 49, 49, 137
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 44
NdeII GATC 1 cut(s) 148
NheI GCTAGC 1 cut(s) 26
NmuCI GTSAC 2 cut(s) 19, 89
PflFI GACNNNGTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 37
PsuI RGATCY 1 cut(s) 148
PsyI GACNNNGTC 1 cut(s) 17
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 148
SetI ASST 3 cut(s) 28, 32, 77
SgeI CNNG 8 cut(s) 39, 55, 62, 77, 82, 88, 133, 144
Sse9I AATT 2 cut(s) 83, 99
SsiI CCGC 1 cut(s) 35
SspMI CTAG 1 cut(s) 27
StyI CCWWGG 2 cut(s) 42, 75
TasI AATT 2 cut(s) 83, 99
TauI GCSGC 1 cut(s) 38
TseFI GTSAC 2 cut(s) 19, 89
Tsp45I GTSAC 2 cut(s) 19, 89
Tth111I GACNNNGTC 1 cut(s) 17
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.