Rroxscaffold_3G00221550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000169
Physical Location & Seq
Reverse (-)
4310381 .. 4312500
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221550.1

Sequence Viewer

Length: 420 bp
ATGTTTGTCCGGAGGTTGAGATTTACCCTAAGAGAGATTTTCTCTCTTACGCTAGCTCTCTACGGTGCCCTCGCCTCCTCTTCTCCTAGCTTTCTTCTCTACGTCTCTCAATCCTCATTTAGCCACACGGCCTCCATTGATGTTATCACCGCTAGCTTTGCTGCCTCCCTTGCGCTTGCCGAGGGAGGTAGTGCTCCGATCCGGGGAGAATTGGTGGCGACCATGTTCGTCGGTCTTCCAAATCTTTTCTACTTGGGAAGCCTCGACTCGCCGGTCGGTCAACCCCTGCGGCCTTCGAGGCTCACTTCCTTCGTACCCGGATGGATGCCACTCGGTGATGTTGAAGAAGAAGTCGGGCAAGATGACGGCTACAACACTAGCAAGCCGGACTCTGAGGCTGTTGTTTCAAGACAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

14.97

Weight (kDa)

4.81

Isoelectric Point (pI)

61.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 65
AccIII TCCGGA 1 cut(s) 9
AciI CCGC 2 cut(s) 150, 289
AclWI GGATC 1 cut(s) 193
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 2 cut(s) 344, 408
AluBI AGCT 3 cut(s) 56, 90, 156
AluI AGCT 3 cut(s) 56, 90, 156
Alw21I GWGCWC 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 193
Aor13HI TCCGGA 1 cut(s) 9
AoxI GGCC 2 cut(s) 129, 290
ApeKI GCWGC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 175
AsuC2I CCSGG 2 cut(s) 203, 318
AsuHPI GGTGA 2 cut(s) 139, 347
AsuNHI GCTAGC 2 cut(s) 52, 152
BaeGI GKGCMC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 315
BceAI ACGGC 2 cut(s) 144, 382
BcnI CCSGG 2 cut(s) 203, 318
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 4 cut(s) 53, 87, 153, 378
BglI GCCNNNNNGGC 1 cut(s) 298
BisI GCNGC 2 cut(s) 162, 290
BlsI GCNGC 2 cut(s) 163, 291
Bme1390I CCNGG 2 cut(s) 203, 318
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 2 cut(s) 203, 318
BmsI GCATC 1 cut(s) 315
BmtI GCTAGC 2 cut(s) 56, 156
BpiI GAAGAC 1 cut(s) 227
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpuMI CCSGG 2 cut(s) 203, 318
BsaJI CCNNGG 2 cut(s) 180, 202
BsaWI WCCGGW 1 cut(s) 9
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 198, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse118I RCCGGY 1 cut(s) 271
BseAI TCCGGA 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 180, 202
BseGI GGATG 2 cut(s) 326, 330
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 384
BseRI GAGGAG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 1 cut(s) 148
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 2 cut(s) 131, 292
BshNI GGYRCC 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 196
BsiSI CCGG 5 cut(s) 10, 202, 272, 318, 386
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 109
BsmBI CGTCTC 1 cut(s) 109
BsnI GGCC 2 cut(s) 131, 292
Bsp1286I GDGCHC 2 cut(s) 70, 196
Bsp13I TCCGGA 1 cut(s) 9
Bsp143I GATC 1 cut(s) 198
BspACI CCGC 2 cut(s) 150, 289
BspANI GGCC 2 cut(s) 131, 292
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 67
BspOI GCTAGC 2 cut(s) 56, 156
BspPI GGATC 1 cut(s) 193
BspT107I GGYRCC 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 180, 202
BssMI GATC 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 85
BstC8I GCNNGC 4 cut(s) 54, 154, 177, 383
BstDEI CTNAG 2 cut(s) 29, 393
BstF5I GGATG 2 cut(s) 326, 330
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 1 cut(s) 198
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 3 cut(s) 158, 170, 298
BstSCI CCNGG 2 cut(s) 201, 316
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 227
BsuRI GGCC 2 cut(s) 131, 292
BtsCI GGATG 2 cut(s) 326, 330
Cac8I GCNNGC 4 cut(s) 54, 154, 177, 383
CfoI GCGC 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 271
Csp6I GTAC 1 cut(s) 314
CviAII CATG 1 cut(s) 223
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 2 cut(s) 29, 393
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
DraIII CACNNNGTG 1 cut(s) 335
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 1 cut(s) 226
FaiI YATR 1 cut(s) 224
FatI CATG 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 162, 290
FokI GGATG 2 cut(s) 333, 337
Fsp4HI GCNGC 2 cut(s) 162, 290
FspBI CTAG 4 cut(s) 53, 87, 153, 378
GlaI GCGC 1 cut(s) 174
GluI GCNGC 2 cut(s) 162, 290
HaeIII GGCC 2 cut(s) 131, 292
HapII CCGG 5 cut(s) 10, 202, 272, 318, 386
HhaI GCGC 1 cut(s) 175
Hin1II CATG 1 cut(s) 226
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HinfI GANTC 2 cut(s) 266, 389
HpaII CCGG 5 cut(s) 10, 202, 272, 318, 386
HphI GGTGA 2 cut(s) 139, 347
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 198, 394
Hpy188III TCNNGA 2 cut(s) 10, 408
Hpy8I GTNNAC 1 cut(s) 281
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 303, 319
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 170, 298
HpyF3I CTNAG 2 cut(s) 29, 393
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 1 cut(s) 226
HspAI GCGC 1 cut(s) 173
Kpn2I TCCGGA 1 cut(s) 9
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 6 cut(s) 23, 215, 285, 299, 331, 399
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 315
MaeI CTAG 4 cut(s) 53, 87, 153, 378
MaeII ACGT 1 cut(s) 102
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 5 cut(s) 72, 86, 227, 356, 359
MhlI GDGCHC 2 cut(s) 70, 196
MluCI AATT 1 cut(s) 209
MlyI GAGTC 2 cut(s) 260, 383
MroI TCCGGA 1 cut(s) 9
MseI TTAA 1 cut(s) 418
MspI CCGG 5 cut(s) 10, 202, 272, 318, 386
MspR9I CCNGG 2 cut(s) 203, 318
MwoI GCNNNNNNNGC 3 cut(s) 158, 170, 298
NciI CCSGG 2 cut(s) 203, 318
NdeII GATC 1 cut(s) 198
NheI GCTAGC 2 cut(s) 52, 152
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 67
NmeAIII GCCGAG 1 cut(s) 205
PkrI GCNGC 2 cut(s) 163, 291
PleI GAGTC 2 cut(s) 260, 383
PpsI GAGTC 2 cut(s) 260, 383
PspN4I GGNNCC 1 cut(s) 67
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 418
SatI GCNGC 2 cut(s) 162, 290
Sau3AI GATC 1 cut(s) 198
SchI GAGTC 2 cut(s) 260, 383
ScrFI CCNGG 2 cut(s) 203, 318
SduI GDGCHC 2 cut(s) 70, 196
SetI ASST 6 cut(s) 17, 58, 92, 105, 158, 190
SfaNI GCATC 1 cut(s) 315
Sse9I AATT 1 cut(s) 209
SsiI CCGC 2 cut(s) 150, 289
SspI AATATT 1 cut(s) 416
SspMI CTAG 4 cut(s) 53, 87, 153, 378
StyD4I CCNGG 2 cut(s) 201, 316
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 264, 296
TaqII GACCGA 2 cut(s) 221, 266
TasI AATT 1 cut(s) 209
TauI GCSGC 1 cut(s) 292
Tru1I TTAA 1 cut(s) 418
Tru9I TTAA 1 cut(s) 418
TseI GCWGC 1 cut(s) 161
XspI CTAG 4 cut(s) 53, 87, 153, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.