Rmu_sc0000367.1_g000120

Ribosomal protein L14p/L23e

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000367.1
OG0000169
Physical Location & Seq
Forward (+)
569142 .. 569994
853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000367.1_g000120.1.cds

Sequence Viewer

Length: 741 bp
atggtggagaaggatttccggattcaagaaaaggctgataatcggttcctgttctcctttgacttggtccggtatcagaacaaggtgcttaggggcggggtatggtgcttctaccgggctccggtttgtctggaggagtatgatggagtcatcctcatcgctgacatctctatgaagcatttcctgatgtgggttagggtttctggcatccctcttctctacgagaaacctgataattttatcctcattgggaatcttctgggcggttatctggactacgataagagagagtttcgcaagggtaccgtccgtatatttttctctcatgacatctccaagactgttcttctagagcgtaggtttttcctagccccagatggttttaaagtttggtggcggccctctacctttggtggtgccttttccttctctgcccagactacccgagatatacctatgcctttttcttccttgctgaaacagaagaagccagtcattcgtcgtctagagcgttcaacaattgaacctactgctcctgaggatactgtgcacaccacatcagagttggaaggcatagatcaagaggtcgttttacaggaaatgaccactgagttgacctcagtggaaccttctgaatcggggacaaaagaccttacccaggcccctgccatgcaagttgtgtcgaagcaaaccctgacctttaagaaaagaggtcgacgaggcggctgttccttcccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

246

Amino Acids

28.35

Weight (kDa)

8.91

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 2 cut(s) 302, 416
AccI GTMKAC 1 cut(s) 715
AccIII TCCGGA 1 cut(s) 18
AciI CCGC 4 cut(s) 96, 264, 397, 723
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 3 cut(s) 121, 190, 658
AgsI TTSAA 3 cut(s) 26, 516, 524
AjnI CCWGG 1 cut(s) 657
Alw21I GWGCWC 1 cut(s) 552
Alw44I GTGCAC 1 cut(s) 548
Ama87I CYCGRG 1 cut(s) 444
Aor13HI TCCGGA 1 cut(s) 18
AoxI GGCC 2 cut(s) 398, 660
ApaLI GTGCAC 1 cut(s) 548
Asp700I GAANNNNTTC 2 cut(s) 14, 179
Asp718I GGTACC 1 cut(s) 302
AspS9I GGNCC 3 cut(s) 67, 399, 661
AsuC2I CCSGG 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 444
AvaII GGWCC 1 cut(s) 67
AxyI CCTNAGG 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 552
BanI GGYRCC 2 cut(s) 302, 416
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 552
BccI CCATC 2 cut(s) 137, 371
BciT130I CCWGG 1 cut(s) 659
BciVI GTATCC 1 cut(s) 535
BcnI CCSGG 1 cut(s) 116
BfaI CTAG 3 cut(s) 350, 368, 506
BfuI GTATCC 1 cut(s) 535
BisI GCNGC 2 cut(s) 398, 724
BlsI GCNGC 2 cut(s) 399, 725
Bme1390I CCNGG 2 cut(s) 116, 659
Bme18I GGWCC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 444
BmgT120I GGNCC 3 cut(s) 67, 399, 661
BmiI GGNNCC 6 cut(s) 47, 120, 304, 418, 627, 663
BmrFI CCNGG 2 cut(s) 116, 659
BmsI GCATC 1 cut(s) 216
BplI GAGNNNNNCTC 4 cut(s) 138, 170, 602, 634
BpmI CTGGAG 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 657
BsaWI WCCGGW 3 cut(s) 18, 69, 121
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 190, 658
Bse1I ACTGG 1 cut(s) 491
Bse21I CCTNAGG 1 cut(s) 537
BseAI TCCGGA 1 cut(s) 18
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 1 cut(s) 657
BseGI GGATG 2 cut(s) 150, 207
BseLI CCNNNNNNNGG 3 cut(s) 121, 190, 658
BseMII CTCAG 3 cut(s) 528, 600, 633
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 552
BshFI GGCC 2 cut(s) 400, 662
BshNI GGYRCC 2 cut(s) 302, 416
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 444
BsiSI CCGG 4 cut(s) 19, 70, 115, 122
BslFI GGGAC 1 cut(s) 655
BslI CCNNNNNNNGG 3 cut(s) 121, 190, 658
BsmFI GGGAC 1 cut(s) 655
BsnI GGCC 2 cut(s) 400, 662
BsoBI CYCGRG 1 cut(s) 444
Bsp1286I GDGCHC 2 cut(s) 121, 552
Bsp13I TCCGGA 1 cut(s) 18
Bsp143I GATC 1 cut(s) 577
BspACI CCGC 4 cut(s) 96, 264, 397, 723
BspANI GGCC 2 cut(s) 400, 662
BspCNI CTCAG 3 cut(s) 529, 601, 632
BspEI TCCGGA 1 cut(s) 18
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 6 cut(s) 47, 120, 304, 418, 627, 663
BspT107I GGYRCC 2 cut(s) 302, 416
BsrI ACTGG 1 cut(s) 491
BssECI CCNNGG 1 cut(s) 657
BssMI GATC 1 cut(s) 577
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 3 cut(s) 307, 343, 547
Bst6I CTCTTC 1 cut(s) 219
BstDEI CTNAG 4 cut(s) 89, 537, 609, 619
BstENI CCTNNNNNAGG 1 cut(s) 656
BstF5I GGATG 2 cut(s) 150, 207
BstKTI GATC 1 cut(s) 580
BstMBI GATC 1 cut(s) 577
BstNI CCWGG 1 cut(s) 659
BstSCI CCNGG 2 cut(s) 114, 657
BstSLI GKGCMC 1 cut(s) 552
Bsu36I CCTNAGG 1 cut(s) 537
BsuI GTATCC 1 cut(s) 535
BsuRI GGCC 2 cut(s) 400, 662
BtgZI GCGATG 1 cut(s) 142
BtsCI GGATG 2 cut(s) 150, 207
BtsIMutI CAGTG 2 cut(s) 606, 627
CciI TCATGA 1 cut(s) 325
Cfr13I GGNCC 3 cut(s) 67, 399, 661
Csp6I GTAC 1 cut(s) 303
CviAII CATG 2 cut(s) 326, 670
CviJI RGCY 7 cut(s) 35, 119, 371, 400, 490, 662, 726
CviKI_1 RGCY 7 cut(s) 35, 119, 371, 400, 490, 662, 726
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 4 cut(s) 89, 537, 609, 619
DpnI GATC 1 cut(s) 579
DpnII GATC 1 cut(s) 577
DraI TTTAAA 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 67
Eco81I CCTNAGG 1 cut(s) 537
Eco88I CYCGRG 1 cut(s) 444
EcoNI CCTNNNNNAGG 1 cut(s) 656
EcoO109I RGGNCCY 1 cut(s) 661
EcoRII CCWGG 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 121
FaeI CATG 2 cut(s) 329, 673
FaiI YATR 9 cut(s) 103, 141, 173, 314, 327, 452, 458, 575, 671
FaqI GGGAC 1 cut(s) 655
FatI CATG 2 cut(s) 325, 669
FauI CCCGC 1 cut(s) 89
FblI GTMKAC 1 cut(s) 715
Fnu4HI GCNGC 2 cut(s) 398, 724
FokI GGATG 2 cut(s) 137, 194
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 398, 724
FspBI CTAG 3 cut(s) 350, 368, 506
GluI GCNGC 2 cut(s) 398, 724
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 2 cut(s) 400, 662
HapII CCGG 4 cut(s) 19, 70, 115, 122
Hin1II CATG 2 cut(s) 329, 673
HincII GTYRAC 2 cut(s) 615, 716
HindII GTYRAC 2 cut(s) 615, 716
HinfI GANTC 4 cut(s) 22, 147, 253, 635
HpaII CCGG 4 cut(s) 19, 70, 115, 122
Hpy166II GTNNAC 3 cut(s) 550, 615, 716
Hpy188I TCNGA 3 cut(s) 78, 562, 634
Hpy8I GTNNAC 3 cut(s) 550, 615, 716
Hpy99I CGWCG 2 cut(s) 504, 720
HpyAV CCTTC 4 cut(s) 4, 436, 563, 639
HpyCH4III ACNGT 3 cut(s) 307, 343, 547
HpyCH4V TGCA 2 cut(s) 550, 673
HpyF3I CTNAG 4 cut(s) 89, 537, 609, 619
Hsp92II CATG 2 cut(s) 329, 673
Kpn2I TCCGGA 1 cut(s) 18
KpnI GGTACC 1 cut(s) 306
Kzo9I GATC 1 cut(s) 577
LmnI GCTCC 2 cut(s) 124, 538
LweI GCATC 1 cut(s) 216
MaeI CTAG 3 cut(s) 350, 368, 506
MalI GATC 1 cut(s) 579
MboI GATC 1 cut(s) 577
MboII GAAGA 5 cut(s) 206, 248, 338, 459, 496
MfeI CAATTG 1 cut(s) 519
MhlI GDGCHC 2 cut(s) 121, 552
MluCI AATT 2 cut(s) 235, 519
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 546
MroI TCCGGA 1 cut(s) 18
MroXI GAANNNNTTC 2 cut(s) 14, 179
MseI TTAA 2 cut(s) 384, 702
MslI CAYNNNNRTG 1 cut(s) 170
MspI CCGG 4 cut(s) 19, 70, 115, 122
MspR9I CCNGG 2 cut(s) 116, 659
MunI CAATTG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 659
NciI CCSGG 1 cut(s) 116
NdeII GATC 1 cut(s) 577
NlaIII CATG 2 cut(s) 329, 673
NlaIV GGNNCC 6 cut(s) 47, 120, 304, 418, 627, 663
PagI TCATGA 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 508
PdmI GAANNNNTTC 2 cut(s) 14, 179
PfeI GAWTC 3 cut(s) 22, 253, 635
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 399, 725
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 6 cut(s) 47, 120, 304, 418, 627, 663
PspPI GGNCC 3 cut(s) 67, 399, 661
PsyI GACNNNGTC 1 cut(s) 65
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
RseI CAYNNNNRTG 1 cut(s) 170
SalI GTCGAC 1 cut(s) 714
SaqAI TTAA 2 cut(s) 384, 702
SatI GCNGC 2 cut(s) 398, 724
Sau3AI GATC 1 cut(s) 577
Sau96I GGNCC 3 cut(s) 67, 399, 661
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 2 cut(s) 116, 659
SduI GDGCHC 2 cut(s) 121, 552
SfaNI GCATC 1 cut(s) 216
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 2 cut(s) 235, 519
SsiI CCGC 4 cut(s) 96, 264, 397, 723
SspMI CTAG 3 cut(s) 350, 368, 506
StyD4I CCNGG 2 cut(s) 114, 657
TaaI ACNGT 3 cut(s) 307, 343, 547
TaqI TCGA 2 cut(s) 683, 715
TasI AATT 2 cut(s) 235, 519
TauI GCSGC 2 cut(s) 400, 726
TfiI GAWTC 3 cut(s) 22, 253, 635
Tru1I TTAA 2 cut(s) 384, 702
Tru9I TTAA 2 cut(s) 384, 702
TscAI CASTG 2 cut(s) 613, 627
TspDTI ATGAA 1 cut(s) 188
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 2 cut(s) 613, 627
Tth111I GACNNNGTC 1 cut(s) 65
VneI GTGCAC 1 cut(s) 548
VpaK11BI GGWCC 1 cut(s) 67
XagI CCTNNNNNAGG 1 cut(s) 656
XbaI TCTAGA 2 cut(s) 349, 505
XcmI CCANNNNNNNNNTGG 1 cut(s) 562
XmiI GTMKAC 1 cut(s) 715
XmnI GAANNNNTTC 2 cut(s) 14, 179
XspI CTAG 3 cut(s) 350, 368, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.