Rmu_sc0000144.1_g000051

Domain of unknown function (DUF4283)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000144.1
Physical Location & Seq
Forward (+)
220178 .. 220735
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000144.1_g000051.1.cds

Sequence Viewer

Length: 558 bp
atggcttcaattgatgtcgtcacttcaagttttgcagcctctctgactcttgctgaaggaagtaacgccccagatctgtggaagattggaggaggtcctgttcgtcgatcttctaaatcttttcttatgaggaaacctctcacccataaacttattgactcgaatgctttcaaatcacatctcttccagatgtggatggtggagaagaactttaggattaggattcaagataagactgacaataggttcttgttctcctttgattcggtgcgggatcagaataaggtgcttaggggcagtgtgtggtgctttgacagagccccaatctgtctggaggagtatgatggtgttcttcccgtcgctgaagtccctctaaagaatattaggatgtggtttagggtttctgacatccctcctctctacgaggaacctgacaatttcatccttattagaaacttgttgggtggttatctggactacgataagagagagtttcgaaaaggtattgttcaaattttcttctctcatgacatctccaaaatggttattcttgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

185

Amino Acids

21.47

Weight (kDa)

8.88

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 271
AclWI GGATC 1 cut(s) 282
AcsI RAATTY 1 cut(s) 513
AcuI CTGAAG 2 cut(s) 75, 384
AgsI TTSAA 5 cut(s) 9, 27, 172, 227, 512
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AlwI GGATC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 513
Asp700I GAANNNNTTC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 133
AsuII TTCGAA 1 cut(s) 496
AvaII GGWCC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 47
BccI CCATC 2 cut(s) 190, 338
BglII AGATCT 1 cut(s) 73
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 429
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BpmI CTGGAG 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 290
Bpu14I TTCGAA 1 cut(s) 496
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
BseGI GGATG 4 cut(s) 201, 393, 408, 441
BseRI GAGGAG 3 cut(s) 105, 350, 405
BseXI GCAGC 1 cut(s) 47
BslFI GGGAC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 353
BsmI GAATGC 1 cut(s) 169
Bsp119I TTCGAA 1 cut(s) 496
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 3 cut(s) 73, 107, 274
BspACI CCGC 1 cut(s) 271
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 429
BspPI GGATC 1 cut(s) 282
BspT104I TTCGAA 1 cut(s) 496
BssMI GATC 3 cut(s) 73, 107, 274
Bst6I CTCTTC 1 cut(s) 188
BstBI TTCGAA 1 cut(s) 496
BstDEI CTNAG 1 cut(s) 290
BstF5I GGATG 4 cut(s) 201, 393, 408, 441
BstKTI GATC 3 cut(s) 76, 110, 277
BstMBI GATC 3 cut(s) 73, 107, 274
BstV1I GCAGC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 73
BstXI CCANNNNNNTGG 1 cut(s) 78
BstYI RGATCY 1 cut(s) 73
BtsCI GGATG 4 cut(s) 201, 393, 408, 441
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 304
CciI TCATGA 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 95
CviAII CATG 1 cut(s) 527
CviJI RGCY 3 cut(s) 5, 38, 320
CviKI_1 RGCY 3 cut(s) 5, 38, 320
DdeI CTNAG 1 cut(s) 290
DpnI GATC 3 cut(s) 75, 109, 276
DpnII GATC 3 cut(s) 73, 107, 274
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 95
Eco57I CTGAAG 2 cut(s) 75, 384
EcoO109I RGGNCCY 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 322
FaeI CATG 1 cut(s) 530
FaiI YATR 4 cut(s) 128, 147, 342, 528
FaqI GGGAC 1 cut(s) 353
FatI CATG 1 cut(s) 526
FauI CCCGC 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 4 cut(s) 208, 395, 400, 428
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 353
Hin1II CATG 1 cut(s) 530
HinfI GANTC 4 cut(s) 46, 158, 223, 263
HphI GGTGA 1 cut(s) 133
Hpy188I TCNGA 3 cut(s) 45, 279, 406
Hpy188III TCNNGA 6 cut(s) 187, 227, 332, 473, 527, 551
Hpy99I CGWCG 2 cut(s) 108, 362
HpyAV CCTTC 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 290
Hsp92II CATG 1 cut(s) 530
Kzo9I GATC 3 cut(s) 73, 107, 274
LpnPI CCDG 6 cut(s) 84, 111, 200, 317, 444, 458
Lsp1109I GCAGC 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 19, 62
MalI GATC 3 cut(s) 75, 109, 276
MboI GATC 3 cut(s) 73, 107, 274
MboII GAAGA 6 cut(s) 94, 102, 175, 217, 344, 511
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 3 cut(s) 9, 436, 513
MlyI GAGTC 2 cut(s) 40, 152
MroXI GAANNNNTTC 1 cut(s) 167
MunI CAATTG 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 169
NdeII GATC 3 cut(s) 73, 107, 274
NlaIII CATG 1 cut(s) 530
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 496
PagI TCATGA 1 cut(s) 526
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 2 cut(s) 223, 263
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 2 cut(s) 40, 152
PpsI GAGTC 2 cut(s) 40, 152
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 429
PspPI GGNCC 1 cut(s) 95
PspPPI RGGWCCY 1 cut(s) 95
PsuI RGATCY 1 cut(s) 73
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 3 cut(s) 73, 107, 274
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 2 cut(s) 40, 152
SduI GDGCHC 1 cut(s) 322
SetI ASST 6 cut(s) 97, 139, 248, 288, 433, 505
SfuI TTCGAA 1 cut(s) 496
SinI GGWCC 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 3 cut(s) 9, 436, 513
SsiI CCGC 1 cut(s) 271
SspI AATATT 1 cut(s) 382
TaqI TCGA 3 cut(s) 106, 161, 496
TasI AATT 3 cut(s) 9, 436, 513
TfiI GAWTC 2 cut(s) 223, 263
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 430
TspRI CASTG 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 1 cut(s) 513
XmnI GAANNNNTTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.