Rmu_sc0000605.1_g000060

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000605.1
OG0000169
Physical Location & Seq
Forward (+)
235483 .. 236759
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000605.1_g000060.1.cds

Sequence Viewer

Length: 1101 bp
atggcttcaatcgacgctgtcactgctagttttgctgcctctcttgctcttgctgagggaggtaacgcctcagaaatggggaagattggaggaggtcctgttcgtcgatcttctcagtcttttcttctggggaaacctctcacccgtaaacctattgagtctaatgccttcaaattgcatctcttcaggacatggatggtggagaaggattttaggattcaagaaaagcctaacaatcagtttctcttctcctttgatttggtccgagataggaacaaggtgctcagaggtggtgtgtggtgttttgacagagccccaatttgtctggaggagtatgatggtgttcttcccattgttgaagtccctatgaagcatgttaggatgtgggttaggttccagtttgaacatctcaaagggagatgtcctcagtgtggattgattgcacattctggggctaaatgtgaggagcccaatgcatctgtttctgctcctagggttttgaagtttggtggtggcccctctacctctggtggtgccttctccttctctgctcagactactcgagatttacctatgccttcttcttcactgctgaaaaagaagaagctagttatttgttggctagagcgatcatcttctaaaattgcttctcaggataccatgcatatcacgtcagagatggaaggtatggatcaagaggtttctgtgcaggacaagcccattgggttggccttggtggagccttctgatacgggttctcaagatcttgctactcttgccatgcaaactggtcagaagcaaactttgatttacaagaaaagaggtcgagaagaggtaactgtcccttcccctaagaaattcaaaaccattttgggtgataagcttcttactctccatgcggaagctcttggtttggctgaagttgaagatgatgtcggcctggtgacactgaagaagaggtcaggaagaccactgggaagcaagaacaagggtcaccggtctcaaaagaaggttggattgatccctttgcgtcttacctatccttctactactactgctcaggaggtaggccctaaagctaagggcaaggggaaactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

366

Amino Acids

40.05

Weight (kDa)

9.68

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 533
AciI CCGC 1 cut(s) 899
AclWI GGATC 2 cut(s) 699, 1015
AcsI RAATTY 1 cut(s) 857
AcuI CTGAAG 3 cut(s) 169, 939, 971
AfiI CCNNNNNNNGG 1 cut(s) 431
AgeI ACCGGT 1 cut(s) 996
AgsI TTSAA 8 cut(s) 9, 172, 221, 359, 404, 502, 862, 926
AjiI CACGTC 1 cut(s) 672
AjnI CCWGG 1 cut(s) 939
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 4 cut(s) 607, 883, 905, 1079
AluI AGCT 4 cut(s) 607, 883, 905, 1079
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 1005
AlwI GGATC 2 cut(s) 699, 1015
Ama87I CYCGRG 1 cut(s) 561
AoxI GGCC 4 cut(s) 514, 729, 937, 1069
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 857
AsiGI ACCGGT 1 cut(s) 996
AspA2I CCTAGG 1 cut(s) 491
AspS9I GGNCC 4 cut(s) 95, 262, 515, 1070
AsuHPI GGTGA 4 cut(s) 133, 887, 955, 986
AvaI CYCGRG 1 cut(s) 561
AvaII GGWCC 2 cut(s) 95, 262
AvrII CCTAGG 1 cut(s) 491
BanI GGYRCC 1 cut(s) 533
BanII GRGCYC 2 cut(s) 316, 471
BbsI GAAGAC 1 cut(s) 973
Bbv12I GWGCWC 1 cut(s) 285
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 22
BccI CCATC 3 cut(s) 190, 332, 673
BciT130I CCWGG 1 cut(s) 941
BciVI GTATCC 1 cut(s) 649
BcoDI GTCTC 1 cut(s) 1005
BfaI CTAG 5 cut(s) 27, 492, 608, 623, 1099
BfuI GTATCC 1 cut(s) 649
BglII AGATCT 1 cut(s) 763
BisI GCNGC 1 cut(s) 36
BlnI CCTAGG 1 cut(s) 491
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 941
Bme18I GGWCC 2 cut(s) 95, 262
BmeT110I CYCGRG 1 cut(s) 561
BmgBI CACGTC 1 cut(s) 672
BmgT120I GGNCC 4 cut(s) 95, 262, 515, 1070
BmiI GGNNCC 5 cut(s) 395, 468, 517, 535, 741
BmrFI CCNGG 1 cut(s) 941
BmrI ACTGGG 1 cut(s) 983
BmsI GCATC 2 cut(s) 187, 485
BmuI ACTGGG 1 cut(s) 983
BpiI GAAGAC 1 cut(s) 973
BplI GAGNNNNNCTC 2 cut(s) 409, 441
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 3 cut(s) 54, 1059, 1080
BpuEI CTTGAG 1 cut(s) 744
BsaI GGTCTC 1 cut(s) 1005
BsaJI CCNNGG 2 cut(s) 491, 732
BsaWI WCCGGW 1 cut(s) 996
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse118I RCCGGY 1 cut(s) 996
Bse1I ACTGG 3 cut(s) 397, 793, 978
BseBI CCWGG 1 cut(s) 941
BseDI CCNNGG 2 cut(s) 491, 732
BseGI GGATG 2 cut(s) 201, 387
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMII CTCAG 8 cut(s) 45, 84, 128, 298, 440, 566, 665, 1073
BseNI ACTGG 3 cut(s) 397, 793, 978
BseRI GAGGAG 3 cut(s) 105, 344, 479
BseXI GCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 728
BshFI GGCC 4 cut(s) 516, 731, 939, 1071
BshNI GGYRCC 1 cut(s) 533
BshTI ACCGGT 1 cut(s) 996
BsiHKAI GWGCWC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 561
BsiSI CCGG 1 cut(s) 997
BslFI GGGAC 2 cut(s) 347, 827
BslI CCNNNNNNNGG 1 cut(s) 431
BsmAI GTCTC 1 cut(s) 1005
BsmFI GGGAC 2 cut(s) 347, 827
BsnI GGCC 4 cut(s) 516, 731, 939, 1071
Bso31I GGTCTC 1 cut(s) 1005
BsoBI CYCGRG 1 cut(s) 561
Bsp1286I GDGCHC 3 cut(s) 285, 316, 471
Bsp143I GATC 5 cut(s) 107, 629, 691, 763, 1020
BspACI CCGC 1 cut(s) 899
BspANI GGCC 4 cut(s) 516, 731, 939, 1071
BspCNI CTCAG 8 cut(s) 46, 83, 127, 297, 439, 565, 664, 1072
BspLI GGNNCC 5 cut(s) 395, 468, 517, 535, 741
BspPI GGATC 2 cut(s) 699, 1015
BspT107I GGYRCC 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 1005
BsrFI RCCGGY 1 cut(s) 996
BsrI ACTGG 3 cut(s) 397, 793, 978
BssAI RCCGGY 1 cut(s) 996
BssECI CCNNGG 2 cut(s) 491, 732
BssMI GATC 5 cut(s) 107, 629, 691, 763, 1020
BssT1I CCWWGG 2 cut(s) 491, 732
Bst2UI CCWGG 1 cut(s) 941
Bst4CI ACNGT 1 cut(s) 841
Bst6I CTCTTC 4 cut(s) 188, 251, 825, 950
BstEII GGTNACC 1 cut(s) 992
BstF5I GGATG 2 cut(s) 201, 387
BstKTI GATC 5 cut(s) 110, 632, 694, 766, 1023
BstMAI GTCTC 1 cut(s) 1005
BstMBI GATC 5 cut(s) 107, 629, 691, 763, 1020
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 715, 776
BstNI CCWGG 1 cut(s) 941
BstNSI RCATGY 1 cut(s) 377
BstPI GGTNACC 1 cut(s) 992
BstSCI CCNGG 1 cut(s) 939
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 973
BstX2I RGATCY 1 cut(s) 763
BstXI CCANNNNNNTGG 1 cut(s) 727
BstYI RGATCY 1 cut(s) 763
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 4 cut(s) 516, 731, 939, 1071
BtrI CACGTC 1 cut(s) 672
BtsCI GGATG 2 cut(s) 201, 387
BtsI GCAGTG 2 cut(s) 21, 587
BtsIMutI CAGTG 5 cut(s) 21, 434, 587, 947, 971
Cfr10I RCCGGY 1 cut(s) 996
Cfr13I GGNCC 4 cut(s) 95, 262, 515, 1070
CseI GACGC 2 cut(s) 23, 1019
CspAI ACCGGT 1 cut(s) 996
CviAII CATG 5 cut(s) 192, 374, 661, 781, 896
DpnI GATC 5 cut(s) 109, 631, 693, 765, 1022
DpnII GATC 5 cut(s) 107, 629, 691, 763, 1020
Eam1104I CTCTTC 4 cut(s) 188, 251, 825, 950
EarI CTCTTC 4 cut(s) 188, 251, 825, 950
Eco130I CCWWGG 2 cut(s) 491, 732
Eco24I GRGCYC 2 cut(s) 316, 471
Eco31I GGTCTC 1 cut(s) 1005
Eco47I GGWCC 2 cut(s) 95, 262
Eco57I CTGAAG 3 cut(s) 169, 939, 971
Eco88I CYCGRG 1 cut(s) 561
Eco91I GGTNACC 1 cut(s) 992
EcoO109I RGGNCCY 2 cut(s) 95, 1070
EcoO65I GGTNACC 1 cut(s) 992
EcoRII CCWGG 1 cut(s) 939
EcoT14I CCWWGG 2 cut(s) 491, 732
EcoT22I ATGCAT 2 cut(s) 478, 666
EcoT38I GRGCYC 2 cut(s) 316, 471
ErhI CCWWGG 2 cut(s) 491, 732
FaeI CATG 5 cut(s) 195, 377, 664, 784, 899
FaqI GGGAC 2 cut(s) 347, 827
FatI CATG 5 cut(s) 191, 373, 660, 780, 895
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 208, 394
FriOI GRGCYC 2 cut(s) 316, 471
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 5 cut(s) 27, 492, 608, 623, 1099
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 4 cut(s) 516, 731, 939, 1071
HapII CCGG 1 cut(s) 997
HgaI GACGC 2 cut(s) 23, 1019
Hin1II CATG 5 cut(s) 195, 377, 664, 784, 899
HindIII AAGCTT 1 cut(s) 881
HinfI GANTC 2 cut(s) 158, 217
HpaII CCGG 1 cut(s) 997
HphI GGTGA 4 cut(s) 133, 887, 955, 986
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 7 cut(s) 73, 266, 287, 555, 676, 748, 795
Hpy8I GTNNAC 1 cut(s) 149
Hpy99I CGWCG 2 cut(s) 17, 108
HpyCH4III ACNGT 1 cut(s) 841
HpyCH4IV ACGT 1 cut(s) 671
HpyCH4V TGCA 6 cut(s) 178, 443, 476, 664, 709, 784
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 715, 776
HpySE526I ACGT 1 cut(s) 671
Hsp92II CATG 5 cut(s) 195, 377, 664, 784, 899
Kzo9I GATC 5 cut(s) 107, 629, 691, 763, 1020
LmnI GCTCC 3 cut(s) 466, 493, 739
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 187, 485
MaeI CTAG 5 cut(s) 27, 492, 608, 623, 1099
MaeII ACGT 1 cut(s) 671
MaeIII GTNAC 5 cut(s) 19, 62, 835, 943, 992
MalI GATC 5 cut(s) 109, 631, 693, 765, 1022
MboI GATC 5 cut(s) 107, 629, 691, 763, 1020
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 3 cut(s) 285, 316, 471
MluCI AATT 4 cut(s) 173, 318, 642, 857
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 994
Mph1103I ATGCAT 2 cut(s) 478, 666
MspI CCGG 1 cut(s) 997
MspR9I CCNGG 1 cut(s) 941
MvaI CCWGG 1 cut(s) 941
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 44, 715, 776
NdeII GATC 5 cut(s) 107, 629, 691, 763, 1020
NlaIII CATG 5 cut(s) 195, 377, 664, 784, 899
NlaIV GGNNCC 5 cut(s) 395, 468, 517, 535, 741
NmuCI GTSAC 3 cut(s) 19, 943, 992
NsiI ATGCAT 2 cut(s) 478, 666
NspI RCATGY 1 cut(s) 377
PaeR7I CTCGAG 1 cut(s) 561
PfeI GAWTC 1 cut(s) 217
PflFI GACNNNGTC 1 cut(s) 17
PinAI ACCGGT 1 cut(s) 996
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 939
PspEI GGTNACC 1 cut(s) 992
PspGI CCWGG 1 cut(s) 939
PspN4I GGNNCC 5 cut(s) 395, 468, 517, 535, 741
PspPI GGNCC 4 cut(s) 95, 262, 515, 1070
PspPPI RGGWCCY 1 cut(s) 95
PsuI RGATCY 1 cut(s) 763
PsyI GACNNNGTC 1 cut(s) 17
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 5 cut(s) 107, 629, 691, 763, 1020
Sau96I GGNCC 4 cut(s) 95, 262, 515, 1070
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 941
SduI GDGCHC 3 cut(s) 285, 316, 471
SfaNI GCATC 2 cut(s) 187, 485
Sfr274I CTCGAG 1 cut(s) 561
SinI GGWCC 2 cut(s) 95, 262
SlaI CTCGAG 1 cut(s) 561
SmlI CTYRAG 2 cut(s) 561, 759
SmoI CTYRAG 2 cut(s) 561, 759
Sse9I AATT 4 cut(s) 173, 318, 642, 857
SsiI CCGC 1 cut(s) 899
SspMI CTAG 5 cut(s) 27, 492, 608, 623, 1099
StyD4I CCNGG 1 cut(s) 939
StyI CCWWGG 2 cut(s) 491, 732
TaaI ACNGT 1 cut(s) 841
TaiI ACGT 1 cut(s) 674
TaqI TCGA 4 cut(s) 12, 106, 562, 826
TasI AATT 4 cut(s) 173, 318, 642, 857
TfiI GAWTC 1 cut(s) 217
TscAI CASTG 5 cut(s) 28, 434, 594, 954, 978
TseFI GTSAC 3 cut(s) 19, 943, 992
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 3 cut(s) 19, 943, 992
TspDTI ATGAA 1 cut(s) 383
TspRI CASTG 5 cut(s) 28, 434, 594, 954, 978
Tth111I GACNNNGTC 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 95, 262
XapI RAATTY 1 cut(s) 857
XceI RCATGY 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 561
XmaJI CCTAGG 1 cut(s) 491
XspI CTAG 5 cut(s) 27, 492, 608, 623, 1099
Zsp2I ATGCAT 2 cut(s) 478, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.