Rmu_sc0014614.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014614.1
OG0000169
Physical Location & Seq
Forward (+)
7928 .. 8413
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014614.1_g000003.1.cds

Sequence Viewer

Length: 486 bp
atggcttccattgatgcagtcacagcaagttttgctgcctcccttgctcttgctgaggacggtagcgcccctgatctggggaaaattggtggtggtcctgtgcgcaggtcatcccaatcttttattcttggcaaacaattgactcgaaagcaggttgatccgaaggctttcaaatctcacttccaccgaacttggatggtggataaggaattcaggatccaggagagggtgggggatctattcctcttctctttcgaatctgttcaagatcgtaacaaagtattacggggaggagtctggtgttatgatcgcgcccctgtgtgttttgcagagtatgatggagtcaaaccattacatgaagtccaattcaagcatctccgagtttgggctagggtttccggaataccacctctttatgaagagtctgagaatctcaaactgattggtaacctccttgggggttttttggattatgataagaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

161

Amino Acids

18.12

Weight (kDa)

8.89

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 104
Acc36I ACCTGC 2 cut(s) 96, 142
AccII CGCG 1 cut(s) 312
AccIII TCCGGA 1 cut(s) 398
AclWI GGATC 4 cut(s) 152, 211, 224, 243
AcsI RAATTY 1 cut(s) 209
AfiI CCNNNNNNNGG 5 cut(s) 76, 77, 226, 385, 457
AgsI TTSAA 3 cut(s) 172, 266, 370
AjnI CCWGG 1 cut(s) 219
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AlwI GGATC 4 cut(s) 152, 211, 224, 243
Aor13HI TCCGGA 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 209
Asp700I GAANNNNTTC 2 cut(s) 167, 261
AspLEI GCGC 3 cut(s) 68, 105, 314
AspS9I GGNCC 1 cut(s) 95
AsuII TTCGAA 1 cut(s) 255
AvaII GGWCC 1 cut(s) 95
BamHI GGATCC 1 cut(s) 216
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 22
BccI CCATC 2 cut(s) 190, 332
BciT130I CCWGG 1 cut(s) 221
BfaI CTAG 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 2 cut(s) 96, 142
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 2 cut(s) 4, 382
Bpu10I CCTNAGC 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 454
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 5 cut(s) 76, 77, 226, 385, 457
BseAI TCCGGA 1 cut(s) 398
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 454
BseGI GGATG 2 cut(s) 110, 201
BseLI CCNNNNNNNGG 5 cut(s) 76, 77, 226, 385, 457
BseMII CTCAG 2 cut(s) 45, 417
BseRI GAGGAG 1 cut(s) 306
BseXI GCAGC 1 cut(s) 22
Bsh1236I CGCG 1 cut(s) 312
BsiSI CCGG 1 cut(s) 399
BslI CCNNNNNNNGG 5 cut(s) 76, 77, 226, 385, 457
Bsp119I TTCGAA 1 cut(s) 255
Bsp13I TCCGGA 1 cut(s) 398
Bsp143I GATC 6 cut(s) 73, 157, 216, 235, 268, 307
BspCNI CTCAG 2 cut(s) 46, 418
BspEI TCCGGA 1 cut(s) 398
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 218
BspMI ACCTGC 2 cut(s) 96, 142
BspPI GGATC 4 cut(s) 152, 211, 224, 243
BspT104I TTCGAA 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 454
BssMI GATC 6 cut(s) 73, 157, 216, 235, 268, 307
BssT1I CCWWGG 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 2 cut(s) 251, 414
BstAPI GCANNNNNTGC 1 cut(s) 32
BstBI TTCGAA 1 cut(s) 255
BstDEI CTNAG 2 cut(s) 54, 426
BstEII GGTNACC 1 cut(s) 446
BstF5I GGATG 2 cut(s) 110, 201
BstFNI CGCG 1 cut(s) 312
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 3 cut(s) 68, 105, 314
BstKTI GATC 6 cut(s) 76, 160, 219, 238, 271, 310
BstMBI GATC 6 cut(s) 73, 157, 216, 235, 268, 307
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 44
BstNI CCWGG 1 cut(s) 221
BstPI GGTNACC 1 cut(s) 446
BstSCI CCNGG 1 cut(s) 219
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 2 cut(s) 216, 235
BstYI RGATCY 2 cut(s) 216, 235
BtsCI GGATG 2 cut(s) 110, 201
BveI ACCTGC 2 cut(s) 96, 142
CfoI GCGC 3 cut(s) 68, 105, 314
Cfr13I GGNCC 1 cut(s) 95
CspCI CAANNNNNGTGG 2 cut(s) 173, 208
CviAII CATG 1 cut(s) 356
CviJI RGCY 3 cut(s) 5, 167, 389
CviKI_1 RGCY 3 cut(s) 5, 167, 389
DdeI CTNAG 2 cut(s) 54, 426
DpnI GATC 6 cut(s) 75, 159, 218, 237, 270, 309
DpnII GATC 6 cut(s) 73, 157, 216, 235, 268, 307
Eam1104I CTCTTC 2 cut(s) 251, 414
EarI CTCTTC 2 cut(s) 251, 414
Eco130I CCWWGG 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 95
Eco91I GGTNACC 1 cut(s) 446
EcoO65I GGTNACC 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 1 cut(s) 359
FaiI YATR 5 cut(s) 306, 336, 357, 417, 474
FatI CATG 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 97, 208
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 390
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 3 cut(s) 67, 104, 313
GluI GCNGC 1 cut(s) 36
HaeII RGCGCY 1 cut(s) 69
HapII CCGG 1 cut(s) 399
HhaI GCGC 3 cut(s) 68, 105, 314
Hin1II CATG 1 cut(s) 359
Hin6I GCGC 3 cut(s) 66, 103, 312
HinP1I GCGC 3 cut(s) 66, 103, 312
HinfI GANTC 6 cut(s) 142, 257, 294, 342, 422, 430
HpaII CCGG 1 cut(s) 399
Hpy188I TCNGA 3 cut(s) 162, 380, 427
Hpy188III TCNNGA 3 cut(s) 214, 266, 399
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 17, 329
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 44
HpyF3I CTNAG 2 cut(s) 54, 426
Hsp92II CATG 1 cut(s) 359
HspAI GCGC 3 cut(s) 66, 103, 312
Kpn2I TCCGGA 1 cut(s) 398
Kzo9I GATC 6 cut(s) 73, 157, 216, 235, 268, 307
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 4, 382
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 3 cut(s) 19, 272, 446
MalI GATC 6 cut(s) 75, 159, 218, 237, 270, 309
MboI GATC 6 cut(s) 73, 157, 216, 235, 268, 307
MboII GAAGA 2 cut(s) 238, 431
MfeI CAATTG 1 cut(s) 137
MflI RGATCY 2 cut(s) 216, 235
MluCI AATT 4 cut(s) 84, 137, 209, 365
MlyI GAGTC 4 cut(s) 136, 303, 351, 431
MnlI CCTC 7 cut(s) 49, 49, 219, 254, 284, 420, 461
MroI TCCGGA 1 cut(s) 398
MroXI GAANNNNTTC 2 cut(s) 167, 261
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 221
MunI CAATTG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 44
NdeII GATC 6 cut(s) 73, 157, 216, 235, 268, 307
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 19
NsbI TGCGCA 1 cut(s) 104
NspV TTCGAA 1 cut(s) 255
PdmI GAANNNNTTC 2 cut(s) 167, 261
PfeI GAWTC 2 cut(s) 257, 430
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 4 cut(s) 136, 302, 350, 430
PpsI GAGTC 4 cut(s) 136, 302, 350, 430
Psp6I CCWGG 1 cut(s) 219
PspEI GGTNACC 1 cut(s) 446
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 95
PsuI RGATCY 2 cut(s) 216, 235
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 6 cut(s) 73, 157, 216, 235, 268, 307
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 4 cut(s) 136, 303, 351, 431
ScrFI CCNGG 1 cut(s) 221
SetI ASST 4 cut(s) 110, 156, 412, 453
SfaNI GCATC 2 cut(s) 4, 382
SfuI TTCGAA 1 cut(s) 255
SinI GGWCC 1 cut(s) 95
Sse9I AATT 4 cut(s) 84, 137, 209, 365
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 454
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 145, 255
TasI AATT 4 cut(s) 84, 137, 209, 365
TfiI GAWTC 2 cut(s) 257, 430
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 372, 432
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 1 cut(s) 209
XmnI GAANNNNTTC 2 cut(s) 167, 261
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.