Rmu_sc0001055.1_g000001

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001055.1
OG0000169
Physical Location & Seq
Forward (+)
10477 .. 11590
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001055.1_g000001.1.cds

Sequence Viewer

Length: 1062 bp
atggcatccatcgaagcggtaacagcgagttttgctgcctcgcttgcccttgccgaagggggacgtgcccctgacctggggaagataggcggaggtccagtacagaagtcctcccaatcttttctcctgggaaagcctttgactcggaaacccatagacccaaaggcattcatgtctcacttcaatcgaacctggatggtggataaggattttagtgttcaagagcgacctggggacttattcttgttctctttcgctgctacacgtgatcggaacaagtgtatgatggagtcaagtctctgcatgaaattcagtttaaacatctgcaaatctggattagggtttctggcatatatacctcctctgtatgaagaacctgagaatctcaccttgatcggcaaccttttgggcggttttttggagtatgacaagaaggaatttaagaagggggtgattagggttttattcatcgatgacatatctaaaccgatcctactggaaagaaaagtcttcctagatactggggttgaacccatgttgcagtttcaattcgagcatctgcgggggagatgcacccaatgtggttcgatcacacatgctggactttcttgtgaggaacccactgcagtaaaccctacacctagggttttacactttcccagagcttcgacctcagggaattcctttgctttcttttctaagcataagggagactttctctctactttcccgaccgtcccaaggaagaagcaccctgtttttcgtcgagtggagcattcgaccttggagtcttcttctcccattaagtcagctccaacagtagtcagtactaggggggcaaatattgctgtgatgcacggtttggagagtaacaaaagtctaggtgaggttcctgaactggctgtttttggagacattgttattactccaggtaagcagaagcaacagactgttttgccgtccaaaaagctggagcgtggtggtgcttgccagcctagtcccaagaaatttaaaacaatcttgggtggcaagattccaacactgcatgctgaggcactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

353

Amino Acids

38.67

Weight (kDa)

9.43

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 787
AciI CCGC 4 cut(s) 17, 90, 411, 562
AclWI GGATC 1 cut(s) 484
AcsI RAATTY 4 cut(s) 308, 437, 679, 1007
AcvI CACGTG 1 cut(s) 266
AfaI GTAC 2 cut(s) 102, 829
AfiI CCNNNNNNNGG 3 cut(s) 76, 77, 741
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 4 cut(s) 184, 221, 530, 548
AjiI CACGTC 1 cut(s) 65
AjnI CCWGG 5 cut(s) 75, 126, 191, 229, 928
AluBI AGCT 3 cut(s) 665, 812, 970
AluI AGCT 3 cut(s) 665, 812, 970
Alw26I GTCTC 4 cut(s) 180, 302, 705, 906
AlwI GGATC 1 cut(s) 484
ApeKI GCWGC 2 cut(s) 35, 257
ApoI RAATTY 4 cut(s) 308, 437, 679, 1007
AspA2I CCTAGG 1 cut(s) 641
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 3 cut(s) 379, 463, 896
AvaII GGWCC 1 cut(s) 95
AvrII CCTAGG 1 cut(s) 641
AxyI CCTNAGG 1 cut(s) 673
BaeGI GKGCMC 1 cut(s) 70
BaeI ACNNNNGTAYC 2 cut(s) 510, 543
BbrPI CACGTG 1 cut(s) 266
BbsI GAAGAC 2 cut(s) 502, 783
BbvCI CCTCAGC 1 cut(s) 1050
BbvI GCAGC 2 cut(s) 22, 244
BccI CCATC 3 cut(s) 17, 190, 280
BceAI ACGGC 1 cut(s) 943
BciT130I CCWGG 5 cut(s) 77, 128, 193, 231, 930
BcoDI GTCTC 4 cut(s) 180, 302, 705, 906
BfaI CTAG 5 cut(s) 515, 642, 831, 881, 996
BfmI CTRYAG 1 cut(s) 624
BisI GCNGC 2 cut(s) 36, 258
BlnI CCTAGG 1 cut(s) 641
BlsI GCNGC 2 cut(s) 37, 259
BmcAI AGTACT 1 cut(s) 829
Bme1390I CCNGG 5 cut(s) 77, 128, 193, 231, 930
Bme18I GGWCC 1 cut(s) 95
BmgBI CACGTC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 2 cut(s) 618, 891
BmrFI CCNGG 5 cut(s) 77, 128, 193, 231, 930
BmrI ACTGGG 1 cut(s) 531
BmsI GCATC 4 cut(s) 14, 560, 565, 843
BmuI ACTGGG 1 cut(s) 531
BpiI GAAGAC 2 cut(s) 502, 783
BplI GAGNNNNNCTC 2 cut(s) 702, 734
BpmI CTGGAG 2 cut(s) 912, 992
Bpu10I CCTNAGC 1 cut(s) 1050
Bsa29I ATCGAT 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 266
BsaJI CCNNGG 6 cut(s) 76, 127, 230, 641, 740, 783
BsaXI ACNNNNNCTCC 4 cut(s) 84, 114, 903, 933
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 77, 741
Bse1I ACTGG 4 cut(s) 98, 501, 526, 903
Bse21I CCTNAGG 1 cut(s) 673
BseBI CCWGG 5 cut(s) 77, 128, 193, 231, 930
BseCI ATCGAT 1 cut(s) 471
BseDI CCNNGG 6 cut(s) 76, 127, 230, 641, 740, 783
BseGI GGATG 2 cut(s) 5, 201
BseLI CCNNNNNNNGG 3 cut(s) 76, 77, 741
BseMII CTCAG 3 cut(s) 369, 687, 1041
BseNI ACTGG 4 cut(s) 98, 501, 526, 903
BseRI GAGGAG 1 cut(s) 351
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 2 cut(s) 22, 244
Bsh1285I CGRYCG 1 cut(s) 735
BshVI ATCGAT 1 cut(s) 471
BsiEI CGRYCG 1 cut(s) 735
BslFI GGGAC 4 cut(s) 75, 248, 722, 984
BslI CCNNNNNNNGG 3 cut(s) 76, 77, 741
BsmAI GTCTC 4 cut(s) 180, 302, 705, 906
BsmFI GGGAC 4 cut(s) 75, 248, 722, 984
BsmI GAATGC 2 cut(s) 167, 775
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 4 cut(s) 268, 393, 489, 588
BspACI CCGC 4 cut(s) 17, 90, 411, 562
BspCNI CTCAG 3 cut(s) 370, 686, 1042
BspDI ATCGAT 1 cut(s) 471
BspLI GGNNCC 2 cut(s) 618, 891
BspMAI CTGCAG 1 cut(s) 628
BspPI GGATC 1 cut(s) 484
BsrI ACTGG 4 cut(s) 98, 501, 526, 903
BssECI CCNNGG 6 cut(s) 76, 127, 230, 641, 740, 783
BssMI GATC 4 cut(s) 268, 393, 489, 588
BssT1I CCWWGG 3 cut(s) 641, 740, 783
Bst2UI CCWGG 5 cut(s) 77, 128, 193, 231, 930
Bst4CI ACNGT 4 cut(s) 736, 820, 860, 952
BstAPI GCANNNNNTGC 1 cut(s) 845
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 4 cut(s) 45, 988, 992, 1047
BstDEI CTNAG 4 cut(s) 378, 673, 699, 1050
BstF5I GGATG 2 cut(s) 5, 201
BstKTI GATC 4 cut(s) 271, 396, 492, 591
BstMAI GTCTC 4 cut(s) 180, 302, 705, 906
BstMBI GATC 4 cut(s) 268, 393, 489, 588
BstMCI CGRYCG 1 cut(s) 735
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 845
BstNI CCWGG 5 cut(s) 77, 128, 193, 231, 930
BstNSI RCATGY 2 cut(s) 599, 1049
BstSCI CCNGG 5 cut(s) 75, 126, 191, 229, 928
BstSFI CTRYAG 1 cut(s) 624
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 22, 244
BstV2I GAAGAC 2 cut(s) 502, 783
BstXI CCANNNNNNTGG 1 cut(s) 970
Bsu15I ATCGAT 1 cut(s) 471
Bsu36I CCTNAGG 1 cut(s) 673
BsuTUI ATCGAT 1 cut(s) 471
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 5, 201
BtsI GCAGTG 2 cut(s) 621, 1040
BtsIMutI CAGTG 2 cut(s) 621, 1040
Cac8I GCNNGC 4 cut(s) 45, 988, 992, 1047
Cfr13I GGNCC 1 cut(s) 95
ClaI ATCGAT 1 cut(s) 471
Csp6I GTAC 2 cut(s) 101, 828
CviAII CATG 5 cut(s) 172, 304, 535, 596, 1046
CviJI RGCY 6 cut(s) 136, 665, 812, 902, 970, 994
CviKI_1 RGCY 6 cut(s) 136, 665, 812, 902, 970, 994
CviQI GTAC 2 cut(s) 101, 828
DdeI CTNAG 4 cut(s) 378, 673, 699, 1050
DpnI GATC 4 cut(s) 270, 395, 491, 590
DpnII GATC 4 cut(s) 268, 393, 489, 588
DraI TTTAAA 2 cut(s) 318, 1012
DrdI GACNNNNNNGTC 1 cut(s) 787
DseDI GACNNNNNNGTC 1 cut(s) 787
EciI GGCGGA 1 cut(s) 105
Eco130I CCWWGG 3 cut(s) 641, 740, 783
Eco47I GGWCC 1 cut(s) 95
Eco72I CACGTG 1 cut(s) 266
Eco81I CCTNAGG 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 679
EcoRII CCWGG 5 cut(s) 75, 126, 191, 229, 928
EcoT14I CCWWGG 3 cut(s) 641, 740, 783
ErhI CCWWGG 3 cut(s) 641, 740, 783
FaeI CATG 5 cut(s) 175, 307, 538, 599, 1049
FalI AAGNNNNNCTT 2 cut(s) 698, 730
FaqI GGGAC 4 cut(s) 75, 248, 722, 984
FatI CATG 5 cut(s) 171, 303, 534, 595, 1045
FauI CCCGC 1 cut(s) 555
Fnu4HI GCNGC 2 cut(s) 36, 258
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 2 cut(s) 36, 258
FspBI CTAG 5 cut(s) 515, 642, 831, 881, 996
GluI GCNGC 2 cut(s) 36, 258
GsuI CTGGAG 2 cut(s) 912, 992
Hin1II CATG 5 cut(s) 175, 307, 538, 599, 1049
HinfI GANTC 5 cut(s) 142, 290, 382, 788, 1033
HphI GGTGA 3 cut(s) 379, 463, 896
Hpy166II GTNNAC 1 cut(s) 631
Hpy188I TCNGA 2 cut(s) 147, 273
Hpy188III TCNNGA 4 cut(s) 221, 333, 730, 893
Hpy8I GTNNAC 1 cut(s) 631
Hpy99I CGWCG 1 cut(s) 768
HpyAV CCTTC 3 cut(s) 50, 427, 439
HpyCH4III ACNGT 4 cut(s) 736, 820, 860, 952
HpyCH4IV ACGT 2 cut(s) 64, 265
HpyCH4V TGCA 7 cut(s) 303, 327, 541, 573, 626, 856, 1045
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 845
HpyF3I CTNAG 4 cut(s) 378, 673, 699, 1050
HpySE526I ACGT 2 cut(s) 64, 265
Hsp92II CATG 5 cut(s) 175, 307, 538, 599, 1049
Kzo9I GATC 4 cut(s) 268, 393, 489, 588
LmnI GCTCC 3 cut(s) 772, 817, 973
Lsp1109I GCAGC 2 cut(s) 22, 244
LweI GCATC 4 cut(s) 14, 560, 565, 843
MaeI CTAG 5 cut(s) 515, 642, 831, 881, 996
MaeII ACGT 2 cut(s) 64, 265
MaeIII GTNAC 2 cut(s) 19, 869
MalI GATC 4 cut(s) 270, 395, 491, 590
MboI GATC 4 cut(s) 268, 393, 489, 588
MboII GAAGA 6 cut(s) 94, 383, 502, 757, 783, 786
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 5 cut(s) 308, 437, 548, 679, 1007
MlyI GAGTC 3 cut(s) 136, 299, 797
MmeI TCCRAC 2 cut(s) 839, 1061
MnlI CCTC 9 cut(s) 49, 86, 121, 369, 372, 607, 682, 880, 1045
MseI TTAA 4 cut(s) 317, 441, 804, 1011
MspR9I CCNGG 5 cut(s) 77, 128, 193, 231, 930
MssI GTTTAAAC 1 cut(s) 318
Mva1269I GAATGC 2 cut(s) 167, 775
MvaI CCWGG 5 cut(s) 77, 128, 193, 231, 930
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 845
NdeII GATC 4 cut(s) 268, 393, 489, 588
NlaIII CATG 5 cut(s) 175, 307, 538, 599, 1049
NlaIV GGNNCC 2 cut(s) 618, 891
NspI RCATGY 2 cut(s) 599, 1049
PaeI GCATGC 1 cut(s) 1049
PctI GAATGC 2 cut(s) 167, 775
PfeI GAWTC 2 cut(s) 382, 1033
PkrI GCNGC 2 cut(s) 37, 259
PleI GAGTC 3 cut(s) 136, 298, 796
PmaCI CACGTG 1 cut(s) 266
PmeI GTTTAAAC 1 cut(s) 318
PmlI CACGTG 1 cut(s) 266
PpsI GAGTC 3 cut(s) 136, 298, 796
Ppu21I YACGTR 1 cut(s) 266
Psp6I CCWGG 5 cut(s) 75, 126, 191, 229, 928
PspCI CACGTG 1 cut(s) 266
PspGI CCWGG 5 cut(s) 75, 126, 191, 229, 928
PspN4I GGNNCC 2 cut(s) 618, 891
PspPI GGNCC 1 cut(s) 95
PstI CTGCAG 1 cut(s) 628
RsaI GTAC 2 cut(s) 102, 829
RsaNI GTAC 2 cut(s) 101, 828
SaqAI TTAA 4 cut(s) 317, 441, 804, 1011
SatI GCNGC 2 cut(s) 36, 258
Sau3AI GATC 4 cut(s) 268, 393, 489, 588
Sau96I GGNCC 1 cut(s) 95
ScaI AGTACT 1 cut(s) 829
SchI GAGTC 3 cut(s) 136, 299, 797
ScrFI CCNGG 5 cut(s) 77, 128, 193, 231, 930
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 4 cut(s) 14, 560, 565, 843
SfcI CTRYAG 1 cut(s) 624
SinI GGWCC 1 cut(s) 95
SphI GCATGC 1 cut(s) 1049
Sse9I AATT 5 cut(s) 308, 437, 548, 679, 1007
SsiI CCGC 4 cut(s) 17, 90, 411, 562
SspI AATATT 1 cut(s) 844
SspMI CTAG 5 cut(s) 515, 642, 831, 881, 996
StyD4I CCNGG 5 cut(s) 75, 126, 191, 229, 928
StyI CCWWGG 3 cut(s) 641, 740, 783
TaaI ACNGT 4 cut(s) 736, 820, 860, 952
TaiI ACGT 2 cut(s) 67, 268
TaqI TCGA 8 cut(s) 12, 187, 471, 552, 587, 668, 766, 779
TasI AATT 5 cut(s) 308, 437, 548, 679, 1007
TatI WGTACW 2 cut(s) 100, 827
TfiI GAWTC 2 cut(s) 382, 1033
Tru1I TTAA 4 cut(s) 317, 441, 804, 1011
Tru9I TTAA 4 cut(s) 317, 441, 804, 1011
TscAI CASTG 2 cut(s) 628, 1047
TseI GCWGC 2 cut(s) 35, 257
TspDTI ATGAA 4 cut(s) 160, 320, 384, 457
TspRI CASTG 2 cut(s) 628, 1047
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 4 cut(s) 308, 437, 679, 1007
XceI RCATGY 2 cut(s) 599, 1049
XmaJI CCTAGG 1 cut(s) 641
XspI CTAG 5 cut(s) 515, 642, 831, 881, 996
ZrmI AGTACT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.