Rmu_sc0015167.1_g000003

Domain of unknown function (DUF4283)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015167.1
Physical Location & Seq
Reverse (-)
3415 .. 3911
497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015167.1_g000003.1.cds

Sequence Viewer

Length: 390 bp
atggcttccattggtgcagtcacaacaagctttgctgcatctcttactcttgctgagggcagtagcgcccctgatctggagaaaattggtggtggtcctgtgctcaagatccatgagagggcgggggatctgttccttttctcttttgaatctgttggagatcgtaacaaagtattacggggaggagtctggtgttatgatcgcgcccccgtgtgttttgcagagtatgatggagtcaaaccattgcatgaagtccaattcaagcatctccgagtttgggtcagggtttctggaataccacctctttatgaagagtttgagaatctcacactgattgggaacctccttgggggttttttggattatgataagaaggagtttaagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

14.25

Weight (kDa)

5.9

Isoelectric Point (pI)

25.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 204
AciI CCGC 1 cut(s) 122
AclWI GGATC 2 cut(s) 103, 135
AfiI CCNNNNNNNGG 4 cut(s) 76, 118, 277, 349
AgsI TTSAA 2 cut(s) 149, 262
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 105
AlwI GGATC 2 cut(s) 103, 135
ApeKI GCWGC 1 cut(s) 35
AspLEI GCGC 2 cut(s) 68, 206
AspS9I GGNCC 1 cut(s) 95
AvaII GGWCC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 224
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 341
BmsI GCATC 2 cut(s) 47, 274
BpmI CTGGAG 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 346
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 118, 277, 349
Bse3DI GCAATG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 346
BseLI CCNNNNNNNGG 4 cut(s) 76, 118, 277, 349
BseMI GCAATG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 105
BslI CCNNNNNNNGG 4 cut(s) 76, 118, 277, 349
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 5 cut(s) 73, 108, 127, 160, 199
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 341
BspPI GGATC 2 cut(s) 103, 135
BsrDI GCAATG 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 5 cut(s) 73, 108, 127, 160, 199
BssT1I CCWWGG 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 68, 206
BstKTI GATC 5 cut(s) 76, 111, 130, 163, 202
BstMBI GATC 5 cut(s) 73, 108, 127, 160, 199
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 2 cut(s) 108, 127
BstYI RGATCY 2 cut(s) 108, 127
BtsIMutI CAGTG 1 cut(s) 329
CfoI GCGC 2 cut(s) 68, 206
Cfr13I GGNCC 1 cut(s) 95
CviAII CATG 2 cut(s) 113, 248
CviJI RGCY 2 cut(s) 5, 30
CviKI_1 RGCY 2 cut(s) 5, 30
DdeI CTNAG 1 cut(s) 54
DpnI GATC 5 cut(s) 75, 110, 129, 162, 201
DpnII GATC 5 cut(s) 73, 108, 127, 160, 199
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 2 cut(s) 116, 251
FaiI YATR 6 cut(s) 114, 198, 228, 249, 309, 366
FatI CATG 2 cut(s) 112, 247
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
GlaI GCGC 2 cut(s) 67, 205
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 69
HhaI GCGC 2 cut(s) 68, 206
Hin1II CATG 2 cut(s) 116, 251
Hin6I GCGC 2 cut(s) 66, 204
HinP1I GCGC 2 cut(s) 66, 204
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 4 cut(s) 149, 186, 234, 322
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 3 cut(s) 77, 106, 291
HpyAV CCTTC 1 cut(s) 367
HpyCH4V TGCA 4 cut(s) 17, 38, 221, 247
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 2 cut(s) 116, 251
HspAI GCGC 2 cut(s) 66, 204
Kzo9I GATC 5 cut(s) 73, 108, 127, 160, 199
LpnPI CCDG 6 cut(s) 62, 84, 111, 175, 268, 276
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 47, 274
MaeIII GTNAC 2 cut(s) 19, 164
MalI GATC 5 cut(s) 75, 110, 129, 162, 201
MboI GATC 5 cut(s) 73, 108, 127, 160, 199
MboII GAAGA 1 cut(s) 323
MflI RGATCY 2 cut(s) 108, 127
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 84, 257
MlyI GAGTC 2 cut(s) 195, 243
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 5 cut(s) 49, 111, 176, 312, 353
MseI TTAA 1 cut(s) 381
MvnI CGCG 1 cut(s) 204
NdeII GATC 5 cut(s) 73, 108, 127, 160, 199
NlaIII CATG 2 cut(s) 116, 251
NlaIV GGNNCC 1 cut(s) 341
NmuCI GTSAC 1 cut(s) 19
PfeI GAWTC 2 cut(s) 149, 322
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 2 cut(s) 194, 242
PpsI GAGTC 2 cut(s) 194, 242
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 1 cut(s) 95
PsuI RGATCY 2 cut(s) 108, 127
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 5 cut(s) 73, 108, 127, 160, 199
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 2 cut(s) 195, 243
SduI GDGCHC 1 cut(s) 105
SetI ASST 3 cut(s) 32, 304, 345
SfaNI GCATC 2 cut(s) 47, 274
SinI GGWCC 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 2 cut(s) 84, 257
SsiI CCGC 1 cut(s) 122
StyI CCWWGG 1 cut(s) 346
TasI AATT 2 cut(s) 84, 257
TfiI GAWTC 2 cut(s) 149, 322
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 264, 324
TspRI CASTG 1 cut(s) 336
VpaK11BI GGWCC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.